Cucsa.348540.1 (mRNA) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AAACGGAGGTTGAGTTTGGGTGAAAGAGGATAAGAGCGACGAGAGAGAGACAGAGAGAGACAATGCAAATTGCTGCTGCCAACTTCTTTCTTTCTGTAAATCCCAAGGTAATCCATCCCTTCTCTCCGCCTCAATTTGTGTTTCTCTACTTTCAGTGAATCATAAATCCATGGAATTTTCCAGTATGTTATTGCTTTATATTGAATGAGCAGTGAAGAACAGAGGTAACAAGCAATAACACTGAATATTGTGTATTGGGTCAGAACTATTTGTGCTAAAATAGCTGTTGGTTTTCTGGGGGAAAAATCCCACATGGGGAAGGTTGTGTAAAGTGCCAAAGTAGCTTAGTATTTTGGTGTCTCTGTTTATATTCATCTGAAGTTTATTCATTCTTATTCAGCCTTCTTTCTTAATTGTATGTAGGCTATATATCATAAGCAGACAACAGATTACTTTACTCCAAACCTCACTTGCATAGGTGTATCTTTTCCCAGTCAAATTAGATATGGTAGCAGGAAAATTTCCTTGAGGTAATTTCATATCAATTTGACCATGTTTCTAATGATAACCCAAACTATGAATGATGGTGCCCCGAATTAGAAAGACTTTAGAAGATAATTGACTTACTTTGGACTTTTCTTTCATATGATGGAGCTGATTGGTTAACCATCGAAGTTTACCAAACGTATAAACTCATAAGAGACTAGCTTTACTAGCAAATTTTGTGCATGCAAGTCTAAATGCTCATGATCTGCTCCATTTTCTGAATTAGATGCTTCGCATCCTGTCCTGTTATTTAGTCACTCAAAACAGGAAGTTAACATGGAATATCATCTGAAATCACCAATTCATCATCAGGGCGGCCAATACATTTTTGGATAAAATTTTATGTAGCCATAATCACTTGTATGGTTTTGAAAGACAAGTAGTTGTGTATGTTCCTAATTATAAAAGTTATATGTTCACTCTGCAGTAAAAATAACAGATATCTTCCAGCTGCTTGTGCTGTGTTATCAGGTTACAATACACTTCCTTCTGTTCCTAGAGAAATTTCAACATTATCCATTTGTATAAGGACTATGTTGGATAAAACTTCTAATTTCATTCTGAGCAGAAAATGTGAGTGTTTCATCTTCTCAGTTTGAAGACTTCTCCGTCACTAATGTTACCAATACAAAGGAGAATAAAGAACTAAAGGTATGAAACATGGTGAGTTTATTCTCAGAATCCTTGTCTGTCACCCTCACATTTTTATTCTTCATTTAAGTCCTATTTAGAATTTAGAATTTTCAGTTATTTTGTTTTTGACCCTAAACTTTCAAATATAAGTTTTAGTTACTTCACTTTAACGCATTCTATTTAATCCCGAAGAACTATTCTAGTCCTTGCCATTAATAATTCATCAGTCATTTAAACAAAAAAAACTACTTCACTTTGAAATCCAAAATTGAACCTACTAGTGACCAATGTACCTATCCACCACAGAAATCAGTCATCTTGTAAATAATTAAGACGAAGAGATATACCTATTTGGGTTTCTGTTAAAATTTTATAAAAAAATAACGTTCACACCTGAAATGATTTTTGAGGCAAAAATTTAGGGATTGAAATAGAATATTTGAATCTCTGGGGACCAAAATAAAACGAGCATGAAAATACAGGTTTTGAAGTTGGATTTAAACCCTTGTTGTATGCACAACAATGTAATGCAAATTTAGGAACTCTTATTATTACCATAACGTTTCATTTTTTGGAGTTTGCAACCAGATTCGTGTTGAGGTGTCAGGAGCCAAAACTCGAGCAATTTTCAATGTCGTGTTTGACAGAATGGTAGCTGAAGCCCAACCTATTCCAGGTTTTAGAAGAGTGAAAGGAGGTAATATCCGGAGGCATGTTTCTTATTTTTGAAGTGCTCGTTGTCTTCATTTTCACGTTCTCAAAATCATCATAACATTGTTCTGGCTCCATTAATTTTCTGGCGAGCACTTGTAAACAATCTTGTTTAAGGTTATGGGTGATTGAGATATCTTCATCTTAGAGAGATGAAATTGTTACTAAACGATCTCTCTAAACAATCAGAGAGCCGATTTGCTTAATTTTCTTTTTTCTTTTCCTCGATTCATTTCATTGGACTTGAAACATGCTGCTCTTCGTTGGATGTCAGGAAAGACGCCAAATGTAAGTTTTCTTTACTCTCAATCTGTTGGTTTTCAGGAAGTAACTACTGACAATCTTAATTGGGAAGACATGAGAAGTTACTGATAAGTTCATCATTTGTTCTCAACAGATACCCCGAGACATTCTATTAGAGATACTGGGACCTTCTAAGGTGTACAAACAAGTTATTAAGGAAGTTATCAACTCTACTGTTGCTGCCTATGTGGAAAAGGTAAAGATATAATTTGCATTTTCATGTTCTGATTTTGATAGCATGACGCGCTGAAAGAGTTATGTTGGTTCAAATAGACTGAAAATAACATTATTTCAGCATGTTAGCGCATTCCATATTTTAGTGTTCTCTAATTTCCTTTGCTTTCCTGGAAATTTTTACCGTTGTAGCAGGAAGCTCTAAAAGTGGGTAAAGACTTGAGAATAGATCAAAGCTATGAGGATCTTGAAGACCAATTTGAACCAGATGAAAATTTCTTCTTTGATGCCATTATTCAGCTTAAGGAATCAAACTGAACTACTGAACTATTTGTTAACATACATTCACTCAAACTTGATGCAATTTTGCTAGGAATCTCCAAA AAACGGAGGTTGAGTTTGGGTGAAAGAGGATAAGAGCGACGAGAGAGAGACAGAGAGAGACAATGCAAATTGCTGCTGCCAACTTCTTTCTTTCTGTAAATCCCAAGGCTATATATCATAAGCAGACAACAGATTACTTTACTCCAAACCTCACTTGCATAGGTGTATCTTTTCCCAGTCAAATTAGATATGGTAGCAGGAAAATTTCCTTGAGTAAAAATAACAGATATCTTCCAGCTGCTTGTGCTGTGTTATCAGAAAATGTGAGTGTTTCATCTTCTCAGTTTGAAGACTTCTCCGTCACTAATGTTACCAATACAAAGGAGAATAAAGAACTAAAGATTCGTGTTGAGGTGTCAGGAGCCAAAACTCGAGCAATTTTCAATGTCGTGTTTGACAGAATGGTAGCTGAAGCCCAACCTATTCCAGGTTTTAGAAGAGTGAAAGGAGGAAAGACGCCAAATATACCCCGAGACATTCTATTAGAGATACTGGGACCTTCTAAGGTGTACAAACAAGTTATTAAGGAAGTTATCAACTCTACTGTTGCTGCCTATGTGGAAAAGCAGGAAGCTCTAAAAGTGGGTAAAGACTTGAGAATAGATCAAAGCTATGAGGATCTTGAAGACCAATTTGAACCAGATGAAAATTTCTTCTTTGATGCCATTATTCAGCTTAAGGAATCAAACTGAACTACTGAACTATTTGTTAACATACATTCACTCAAACTTGATGCAATTTTGCTAGGAATCTCCAAA ATGCAAATTGCTGCTGCCAACTTCTTTCTTTCTGTAAATCCCAAGGCTATATATCATAAGCAGACAACAGATTACTTTACTCCAAACCTCACTTGCATAGGTGTATCTTTTCCCAGTCAAATTAGATATGGTAGCAGGAAAATTTCCTTGAGTAAAAATAACAGATATCTTCCAGCTGCTTGTGCTGTGTTATCAGAAAATGTGAGTGTTTCATCTTCTCAGTTTGAAGACTTCTCCGTCACTAATGTTACCAATACAAAGGAGAATAAAGAACTAAAGATTCGTGTTGAGGTGTCAGGAGCCAAAACTCGAGCAATTTTCAATGTCGTGTTTGACAGAATGGTAGCTGAAGCCCAACCTATTCCAGGTTTTAGAAGAGTGAAAGGAGGAAAGACGCCAAATATACCCCGAGACATTCTATTAGAGATACTGGGACCTTCTAAGGTGTACAAACAAGTTATTAAGGAAGTTATCAACTCTACTGTTGCTGCCTATGTGGAAAAGCAGGAAGCTCTAAAAGTGGGTAAAGACTTGAGAATAGATCAAAGCTATGAGGATCTTGAAGACCAATTTGAACCAGATGAAAATTTCTTCTTTGATGCCATTATTCAGCTTAAGGAATCAAACTGA MQIAAANFFLSVNPKAIYHKQTTDYFTPNLTCIGVSFPSQIRYGSRKISLSKNNRYLPAACAVLSENVSVSSSQFEDFSVTNVTNTKENKELKIRVEVSGAKTRAIFNVVFDRMVAEAQPIPGFRRVKGGKTPNIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEKQEALKVGKDLRIDQSYEDLEDQFEPDENFFFDAIIQLKESN*
BLAST of Cucsa.348540.1 vs. TrEMBL
Match: A0A0A0KBW0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G086150 PE=4 SV=1) HSP 1 Score: 404.4 bits (1038), Expect = 8.2e-110 Identity = 208/209 (99.52%), Postives = 208/209 (99.52%), Query Frame = 1
BLAST of Cucsa.348540.1 vs. TrEMBL
Match: A0A061EIP8_THECC (Transport, ribosome-binding, bacterial, putative isoform 2 OS=Theobroma cacao GN=TCM_019901 PE=4 SV=1) HSP 1 Score: 243.8 bits (621), Expect = 1.9e-61 Identity = 133/210 (63.33%), Postives = 159/210 (75.71%), Query Frame = 1
BLAST of Cucsa.348540.1 vs. TrEMBL
Match: A0A067LJ44_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05726 PE=4 SV=1) HSP 1 Score: 241.5 bits (615), Expect = 9.2e-61 Identity = 134/212 (63.21%), Postives = 160/212 (75.47%), Query Frame = 1
BLAST of Cucsa.348540.1 vs. TrEMBL
Match: A0A061EIA3_THECC (Transport, ribosome-binding, bacterial, putative isoform 1 OS=Theobroma cacao GN=TCM_019901 PE=4 SV=1) HSP 1 Score: 238.0 bits (606), Expect = 1.0e-59 Identity = 134/231 (58.01%), Postives = 160/231 (69.26%), Query Frame = 1
BLAST of Cucsa.348540.1 vs. TrEMBL
Match: U5FVR2_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s12910g PE=4 SV=1) HSP 1 Score: 236.5 bits (602), Expect = 3.0e-59 Identity = 129/208 (62.02%), Postives = 158/208 (75.96%), Query Frame = 1
BLAST of Cucsa.348540.1 vs. TAIR10
Match: AT2G30695.1 (AT2G30695.1 FUNCTIONS IN: molecular_function unknown) HSP 1 Score: 176.8 bits (447), Expect = 1.4e-44 Identity = 95/164 (57.93%), Postives = 123/164 (75.00%), Query Frame = 1
BLAST of Cucsa.348540.1 vs. NCBI nr
Match: gi|778711466|ref|XP_011656735.1| (PREDICTED: uncharacterized protein LOC101211587 isoform X1 [Cucumis sativus]) HSP 1 Score: 411.0 bits (1055), Expect = 1.3e-111 Identity = 209/209 (100.00%), Postives = 209/209 (100.00%), Query Frame = 1
BLAST of Cucsa.348540.1 vs. NCBI nr
Match: gi|449445672|ref|XP_004140596.1| (PREDICTED: uncharacterized protein LOC101211587 isoform X2 [Cucumis sativus]) HSP 1 Score: 404.4 bits (1038), Expect = 1.2e-109 Identity = 208/209 (99.52%), Postives = 208/209 (99.52%), Query Frame = 1
BLAST of Cucsa.348540.1 vs. NCBI nr
Match: gi|659120109|ref|XP_008460018.1| (PREDICTED: uncharacterized protein LOC103498958 isoform X3 [Cucumis melo]) HSP 1 Score: 393.7 bits (1010), Expect = 2.1e-106 Identity = 199/209 (95.22%), Postives = 201/209 (96.17%), Query Frame = 1
BLAST of Cucsa.348540.1 vs. NCBI nr
Match: gi|659120105|ref|XP_008460016.1| (PREDICTED: uncharacterized protein LOC103498958 isoform X1 [Cucumis melo]) HSP 1 Score: 387.9 bits (995), Expect = 1.1e-104 Identity = 199/213 (93.43%), Postives = 201/213 (94.37%), Query Frame = 1
BLAST of Cucsa.348540.1 vs. NCBI nr
Match: gi|659120111|ref|XP_008460019.1| (PREDICTED: uncharacterized protein LOC103498958 isoform X4 [Cucumis melo]) HSP 1 Score: 387.1 bits (993), Expect = 1.9e-104 Identity = 198/209 (94.74%), Postives = 200/209 (95.69%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
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