Cucsa.341410 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.341410
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionBasic helix-loop-helix transcription factor
Locationscaffold03356 : 3795413 .. 3795862 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CCAAGTTCAACCAACTCTACAACTCTATCACCATCTCCCTCTCCATCATCTTCGAACATCGAAGAAATCGAGCAGGCTGTTGATCGAGATCAAGTTGTGTCACAAATGAAGGAATGGATATACTATGCAGCGGTGTTTAGGCCAGTAAACTTGGGATTGGAGACGGTGGAGAAGAAGAGGCGGAAGAACGTCAAAATGTCGAAGGAGCCTCAAACGGTTGCGGCAAGAAAACGAAGGGAGAAAATAAGCGAAAAAaTTAGGGTTTTGCAGAGGTTAGTTCCTGGTGGTAGCAAAATGGACATTGGCTCCATGCTTGACGAGGCAGCAAGCTACCTCAAGTTCCTTAGGGCACAAATCAAAGCACTAGAAGGCTTAACCTACAAATTTGGCTCTATAGATTGTCTCTCAACTTGCACCCCTTTGAACTCTACTTTCCCCACAAATCCTTAA

mRNA sequence

CCAAGTTCAACCAACTCTACAACTCTATCACCATCTCCCTCTCCATCATCTTCGAACATCGAAGAAATCGAGCAGGCTGTTGATCGAGATCAAGTTGTGTCACAAATGAAGGAATGGATATACTATGCAGCGGTGTTTAGGCCAGTAAACTTGGGATTGGAGACGGTGGAGAAGAAGAGGCGGAAGAACGTCAAAATGTCGAAGGAGCCTCAAACGGTTGCGGCAAGAAAACGAAGGGAGAAAATAAGCGAAAAAATTAGGGTTTTGCAGAGGTTAGTTCCTGGTGGTAGCAAAATGGACATTGGCTCCATGCTTGACGAGGCAGCAAGCTACCTCAAGTTCCTTAGGGCACAAATCAAAGCACTAGAAGGCTTAACCTACAAATTTGGCTCTATAGATTGTCTCTCAACTTGCACCCCTTTGAACTCTACTTTCCCCACAAATCCTTAA

Coding sequence (CDS)

CCAAGTTCAACCAACTCTACAACTCTATCACCATCTCCCTCTCCATCATCTTCGAACATCGAAGAAATCGAGCAGGCTGTTGATCGAGATCAAGTTGTGTCACAAATGAAGGAATGGATATACTATGCAGCGGTGTTTAGGCCAGTAAACTTGGGATTGGAGACGGTGGAGAAGAAGAGGCGGAAGAACGTCAAAATGTCGAAGGAGCCTCAAACGGTTGCGGCAAGAAAACGAAGGGAGAAAATAAGCGAAAAAaTTAGGGTTTTGCAGAGGTTAGTTCCTGGTGGTAGCAAAATGGACATTGGCTCCATGCTTGACGAGGCAGCAAGCTACCTCAAGTTCCTTAGGGCACAAATCAAAGCACTAGAAGGCTTAACCTACAAATTTGGCTCTATAGATTGTCTCTCAACTTGCACCCCTTTGAACTCTACTTTCCCCACAAATCCTTAA

Protein sequence

PSSTNSTTLSPSPSPSSSNIEEIEQAVDRDQVVSQMKEWIYYAAVFRPVNLGLETVEKKRRKNVKMSKEPQTVAARKRREKISEKIRVLQRLVPGGSKMDIGSMLDEAASYLKFLRAQIKALEGLTYKFGSIDCLSTCTPLNSTFPTNP*
Homology
[Close]
BLAST of Cucsa.341410 vs. Swiss-Prot
Match: BH087_ARATH (Transcription factor bHLH87 OS=Arabidopsis thaliana GN=BHLH87 PE=2 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 4.4e-34
Identity = 76/116 (65.52%), Postives = 91/116 (78.45%), Query Frame = 1 

Query: 31  QVVSQMKEWIYYAAVFRPVNLGLETVEKKRRKNVKMSKEPQTVAARKRREKISEKIRVLQ 90
           + ++QMKE IY AA FRPVN GLE VEK +RKNVK+S +PQTVAAR+RRE+ISEKIRVLQ
Sbjct: 240 EAIAQMKEMIYRAAAFRPVNFGLEIVEKPKRKNVKISTDPQTVAARQRRERISEKIRVLQ 299

Query: 91  RLVPGGSKMDIGSMLDEAASYLKFLRAQIKALEGLTYKFGSIDCLSTCTPLNSTFP 147
            LVPGG+KMD  SMLDEAA+YLKFLRAQ+KALE L  K    +   +  P  ++FP
Sbjct: 300 TLVPGGTKMDTASMLDEAANYLKFLRAQVKALENLRPKLDQTNLSFSSAP--TSFP 353

[Close]
BLAST of Cucsa.341410 vs. Swiss-Prot
Match: HEC2_ARATH (Transcription factor HEC2 OS=Arabidopsis thaliana GN=HEC2 PE=1 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 1.3e-25
Identity = 60/112 (53.57%), Postives = 86/112 (76.79%), Query Frame = 1 

Query: 12  SPSPSSSNIEEIEQAVDRDQVVSQMKEWIYYAAVFRPVNLGLETVEKKRRKNVKMSKEPQ 71
           +PSPSSS  E+     D   + + M+E I+  AV +P+++  E+V+  +RKNV++SK+PQ
Sbjct: 72  APSPSSSLPEKRGGCSDNANMAA-MREMIFRIAVMQPIHIDPESVKPPKRKNVRISKDPQ 131

Query: 72  TVAARKRREKISEKIRVLQRLVPGGSKMDIGSMLDEAASYLKFLRAQIKALE 124
           +VAAR RRE+ISE+IR+LQRLVPGG+KMD  SMLDEA  Y+KFL+ Q+++LE
Sbjct: 132 SVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQSLE 182

[Close]
BLAST of Cucsa.341410 vs. Swiss-Prot
Match: HEC1_ARATH (Transcription factor HEC1 OS=Arabidopsis thaliana GN=HEC1 PE=1 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 8.3e-25
Identity = 57/122 (46.72%), Postives = 91/122 (74.59%), Query Frame = 1 

Query: 4   TNSTTLSPSPSPSSSNIEEIEQAVDRDQVVSQ--MKEWIYYAAVFRPVNLGLETVEKKRR 63
           TN +++SP+ + SS  +++   + + +   +   M+E I+  AV +P+++  E V+  +R
Sbjct: 64  TNPSSISPNTAYSSVFLDKRNNSNNNNNGTNMAAMREMIFRIAVMQPIHIDPEAVKPPKR 123

Query: 64  KNVKMSKEPQTVAARKRREKISEKIRVLQRLVPGGSKMDIGSMLDEAASYLKFLRAQIKA 123
           +NV++SK+PQ+VAAR RRE+ISE+IR+LQRLVPGG+KMD  SMLDEA  Y+KFL+ Q+++
Sbjct: 124 RNVRISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQS 183

[Close]
BLAST of Cucsa.341410 vs. Swiss-Prot
Match: IND_ARATH (Transcription factor IND OS=Arabidopsis thaliana GN=IND PE=1 SV=3)

HSP 1 Score: 110.5 bits (275), Expect = 1.6e-23
Identity = 53/109 (48.62%), Postives = 77/109 (70.64%), Query Frame = 1 

Query: 15  PSSSNIEEIEQAVDRDQVVSQMKEWIYYAAVFRPVNLGLETVEKKRRKNVKMSKEPQTVA 74
           P    +  +++  + D+ +  MKE  Y  AV +PV++   TV K  R+NV++S +PQTV 
Sbjct: 67  PPPETLIHLDEDEEYDEDMDAMKEMQYMIAVMQPVDIDPATVPKPNRRNVRISDDPQTVV 126

Query: 75  ARKRREKISEKIRVLQRLVPGGSKMDIGSMLDEAASYLKFLRAQIKALE 124
           AR+RRE+ISEKIR+L+R+VPGG+KMD  SMLDEA  Y KFL+ Q++ L+
Sbjct: 127 ARRRRERISEKIRILKRIVPGGAKMDTASMLDEAIRYTKFLKRQVRILQ 175

[Close]
BLAST of Cucsa.341410 vs. Swiss-Prot
Match: HEC3_ARATH (Transcription factor HEC3 OS=Arabidopsis thaliana GN=HEC3 PE=1 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 6.0e-23
Identity = 59/125 (47.20%), Postives = 81/125 (64.80%), Query Frame = 1 

Query: 2   SSTNSTTLSPSPSPSSSNIEEIEQAVDRDQVVSQMKEWIYYAAVFRPVNLGLETVEKKRR 61
           S T +T LS          E +E+       +  MKE +Y  A  + V++   TV+K +R
Sbjct: 68  SLTTTTLLSGDQEDDEDEEEPLEE-------LGAMKEMMYKIAAMQSVDIDPATVKKPKR 127

Query: 62  KNVKMSKEPQTVAARKRREKISEKIRVLQRLVPGGSKMDIGSMLDEAASYLKFLRAQIKA 121
           +NV++S +PQ+VAAR RRE+ISE+IR+LQRLVPGG+KMD  SMLDEA  Y+KFL+ QI+ 
Sbjct: 128 RNVRISDDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRL 185

Query: 122 LEGLT 127
           L   T
Sbjct: 188 LNNNT 185

[Close]
BLAST of Cucsa.341410 vs. TrEMBL
Match: A0A0A0LDH7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G850530 PE=4 SV=1)

HSP 1 Score: 293.9 bits (751), Expect = 1.1e-76
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 1 

Query: 1   PSSTNSTTLSPSPSPSSSNIEEIEQAVDRDQVVSQMKEWIYYAAVFRPVNLGLETVEKKR 60
           PSSTNSTTLSPSPSPSSSNIEEIEQAVDRDQVVSQMKEWIYYAAVFRPVNLGLETVEKKR
Sbjct: 123 PSSTNSTTLSPSPSPSSSNIEEIEQAVDRDQVVSQMKEWIYYAAVFRPVNLGLETVEKKR 182

Query: 61  RKNVKMSKEPQTVAARKRREKISEKIRVLQRLVPGGSKMDIGSMLDEAASYLKFLRAQIK 120
           RKNVKMSKEPQTVAARKRREKISEKIRVLQRLVPGGSKMDIGSMLDEAASYLKFLRAQIK
Sbjct: 183 RKNVKMSKEPQTVAARKRREKISEKIRVLQRLVPGGSKMDIGSMLDEAASYLKFLRAQIK 242

Query: 121 ALEGLTYKFGSIDCLSTCTPLNSTFPTNP 150
           ALEGLTYKFGSIDCLSTCTPLNSTFPTNP
Sbjct: 243 ALEGLTYKFGSIDCLSTCTPLNSTFPTNP 271

[Close]
BLAST of Cucsa.341410 vs. TrEMBL
Match: M5X9H7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015446mg PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 5.1e-37
Identity = 89/149 (59.73%), Postives = 110/149 (73.83%), Query Frame = 1 

Query: 1   PSSTNSTTLSPSPSPSSSNIEEIEQAVDRDQVVSQMKEWIYYAAVFRPVNLGLETVEKKR 60
           PSS+N     PS S S+S+IEE +      +V++QMKE IY AA FRPVNLG++ VE+ +
Sbjct: 263 PSSSNINFQQPSSSVSASSIEEPDP-----EVIAQMKEMIYRAAAFRPVNLGMDMVERPK 322

Query: 61  RKNVKMSKEPQTVAARKRREKISEKIRVLQRLVPGGSKMDIGSMLDEAASYLKFLRAQIK 120
           RKNVK+S +PQTVAAR+RRE+ISE+IRVLQRLVPGG KMD  SMLDEAA+YLKFLR+Q+K
Sbjct: 323 RKNVKISSDPQTVAARQRRERISERIRVLQRLVPGGGKMDTASMLDEAANYLKFLRSQVK 382

Query: 121 ALEGLTYKFGSIDCLSTCTPLNSTFPTNP 150
           ALE L  K  S+   S   P +  F  NP
Sbjct: 383 ALENLGQKIESMS-NSNIPPASFAFSFNP 405

[Close]
BLAST of Cucsa.341410 vs. TrEMBL
Match: A0A061GAT2_THECC (Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 2 OS=Theobroma cacao GN=TCM_028961 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 8.6e-37
Identity = 90/149 (60.40%), Postives = 110/149 (73.83%), Query Frame = 1 

Query: 1   PSSTNSTTLSPSPSPSSSNIEEIEQAVDRDQVVSQMKEWIYYAAVFRPVNLGLETVEKKR 60
           PSS+N     PS S SSS IEE +      + ++QMKE IY AA FRPV+LGLE VEK +
Sbjct: 312 PSSSNINFQQPSSSVSSS-IEEPDP-----EAIAQMKEMIYRAAAFRPVSLGLEVVEKPK 371

Query: 61  RKNVKMSKEPQTVAARKRREKISEKIRVLQRLVPGGSKMDIGSMLDEAASYLKFLRAQIK 120
           RKNV++S +PQTVAAR+RRE+ISE+IRVLQRLVPGGSKMD  SMLDEAA+YLKFLR+Q+K
Sbjct: 372 RKNVRISTDPQTVAARQRRERISERIRVLQRLVPGGSKMDTASMLDEAANYLKFLRSQVK 431

Query: 121 ALEGLTYKFGSIDCLSTCTPLNSTFPTNP 150
           ALE L +K   ++    C P N  F + P
Sbjct: 432 ALENLGHKLDPVN----CPPTNHAFSSLP 450

[Close]
BLAST of Cucsa.341410 vs. TrEMBL
Match: A0A061GIV9_THECC (Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 1 OS=Theobroma cacao GN=TCM_028961 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 8.6e-37
Identity = 90/149 (60.40%), Postives = 110/149 (73.83%), Query Frame = 1 

Query: 1   PSSTNSTTLSPSPSPSSSNIEEIEQAVDRDQVVSQMKEWIYYAAVFRPVNLGLETVEKKR 60
           PSS+N     PS S SSS IEE +      + ++QMKE IY AA FRPV+LGLE VEK +
Sbjct: 312 PSSSNINFQQPSSSVSSS-IEEPDP-----EAIAQMKEMIYRAAAFRPVSLGLEVVEKPK 371

Query: 61  RKNVKMSKEPQTVAARKRREKISEKIRVLQRLVPGGSKMDIGSMLDEAASYLKFLRAQIK 120
           RKNV++S +PQTVAAR+RRE+ISE+IRVLQRLVPGGSKMD  SMLDEAA+YLKFLR+Q+K
Sbjct: 372 RKNVRISTDPQTVAARQRRERISERIRVLQRLVPGGSKMDTASMLDEAANYLKFLRSQVK 431

Query: 121 ALEGLTYKFGSIDCLSTCTPLNSTFPTNP 150
           ALE L +K   ++    C P N  F + P
Sbjct: 432 ALENLGHKLDPVN----CPPTNHAFSSLP 450

[Close]
BLAST of Cucsa.341410 vs. TrEMBL
Match: F6HY46_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0002g02700 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 1.1e-36
Identity = 87/151 (57.62%), Postives = 111/151 (73.51%), Query Frame = 1 

Query: 1   PSSTNSTTLSPSPSPSSSNIEEIEQAVDRDQVVSQMKEWIYYAAVFRPVNLGLETVEKKR 60
           PSS+N     PS S SS  +EE +      + ++QMKE IY AA FRPVN G++ VEK +
Sbjct: 310 PSSSNINFQQPSSSASS--VEEPDS-----EAIAQMKEIIYRAAAFRPVNFGMDAVEKPK 369

Query: 61  RKNVKMSKEPQTVAARKRREKISEKIRVLQRLVPGGSKMDIGSMLDEAASYLKFLRAQIK 120
           RKNV++S +PQTVAAR+RRE+ISE+IRVLQRLVPGG+KMD  SMLDEAA+YLKFLR+Q+K
Sbjct: 370 RKNVRISTDPQTVAARQRRERISERIRVLQRLVPGGNKMDTASMLDEAANYLKFLRSQVK 429

Query: 121 ALEGLTYKFGSIDCLST-----CTPLNSTFP 147
           ALE L +K  S++C+ T       P N +FP
Sbjct: 430 ALETLGHKLDSVNCVHTNLPFSALPFNHSFP 453

[Close]
BLAST of Cucsa.341410 vs. TAIR10
Match: AT3G21330.1 (AT3G21330.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 145.6 bits (366), Expect = 2.5e-35
Identity = 76/116 (65.52%), Postives = 91/116 (78.45%), Query Frame = 1 

Query: 31  QVVSQMKEWIYYAAVFRPVNLGLETVEKKRRKNVKMSKEPQTVAARKRREKISEKIRVLQ 90
           + ++QMKE IY AA FRPVN GLE VEK +RKNVK+S +PQTVAAR+RRE+ISEKIRVLQ
Sbjct: 240 EAIAQMKEMIYRAAAFRPVNFGLEIVEKPKRKNVKISTDPQTVAARQRRERISEKIRVLQ 299

Query: 91  RLVPGGSKMDIGSMLDEAASYLKFLRAQIKALEGLTYKFGSIDCLSTCTPLNSTFP 147
            LVPGG+KMD  SMLDEAA+YLKFLRAQ+KALE L  K    +   +  P  ++FP
Sbjct: 300 TLVPGGTKMDTASMLDEAANYLKFLRAQVKALENLRPKLDQTNLSFSSAP--TSFP 353

[Close]
BLAST of Cucsa.341410 vs. TAIR10
Match: AT3G50330.1 (AT3G50330.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 117.5 bits (293), Expect = 7.2e-27
Identity = 60/112 (53.57%), Postives = 86/112 (76.79%), Query Frame = 1 

Query: 12  SPSPSSSNIEEIEQAVDRDQVVSQMKEWIYYAAVFRPVNLGLETVEKKRRKNVKMSKEPQ 71
           +PSPSSS  E+     D   + + M+E I+  AV +P+++  E+V+  +RKNV++SK+PQ
Sbjct: 72  APSPSSSLPEKRGGCSDNANMAA-MREMIFRIAVMQPIHIDPESVKPPKRKNVRISKDPQ 131

Query: 72  TVAARKRREKISEKIRVLQRLVPGGSKMDIGSMLDEAASYLKFLRAQIKALE 124
           +VAAR RRE+ISE+IR+LQRLVPGG+KMD  SMLDEA  Y+KFL+ Q+++LE
Sbjct: 132 SVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQSLE 182

[Close]
BLAST of Cucsa.341410 vs. TAIR10
Match: AT5G67060.1 (AT5G67060.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 114.8 bits (286), Expect = 4.7e-26
Identity = 57/122 (46.72%), Postives = 91/122 (74.59%), Query Frame = 1 

Query: 4   TNSTTLSPSPSPSSSNIEEIEQAVDRDQVVSQ--MKEWIYYAAVFRPVNLGLETVEKKRR 63
           TN +++SP+ + SS  +++   + + +   +   M+E I+  AV +P+++  E V+  +R
Sbjct: 64  TNPSSISPNTAYSSVFLDKRNNSNNNNNGTNMAAMREMIFRIAVMQPIHIDPEAVKPPKR 123

Query: 64  KNVKMSKEPQTVAARKRREKISEKIRVLQRLVPGGSKMDIGSMLDEAASYLKFLRAQIKA 123
           +NV++SK+PQ+VAAR RRE+ISE+IR+LQRLVPGG+KMD  SMLDEA  Y+KFL+ Q+++
Sbjct: 124 RNVRISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQS 183

[Close]
BLAST of Cucsa.341410 vs. TAIR10
Match: AT4G00120.1 (AT4G00120.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 110.5 bits (275), Expect = 8.8e-25
Identity = 53/109 (48.62%), Postives = 77/109 (70.64%), Query Frame = 1 

Query: 15  PSSSNIEEIEQAVDRDQVVSQMKEWIYYAAVFRPVNLGLETVEKKRRKNVKMSKEPQTVA 74
           P    +  +++  + D+ +  MKE  Y  AV +PV++   TV K  R+NV++S +PQTV 
Sbjct: 67  PPPETLIHLDEDEEYDEDMDAMKEMQYMIAVMQPVDIDPATVPKPNRRNVRISDDPQTVV 126

Query: 75  ARKRREKISEKIRVLQRLVPGGSKMDIGSMLDEAASYLKFLRAQIKALE 124
           AR+RRE+ISEKIR+L+R+VPGG+KMD  SMLDEA  Y KFL+ Q++ L+
Sbjct: 127 ARRRRERISEKIRILKRIVPGGAKMDTASMLDEAIRYTKFLKRQVRILQ 175

[Close]
BLAST of Cucsa.341410 vs. TAIR10
Match: AT5G09750.1 (AT5G09750.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 108.6 bits (270), Expect = 3.4e-24
Identity = 59/125 (47.20%), Postives = 81/125 (64.80%), Query Frame = 1 

Query: 2   SSTNSTTLSPSPSPSSSNIEEIEQAVDRDQVVSQMKEWIYYAAVFRPVNLGLETVEKKRR 61
           S T +T LS          E +E+       +  MKE +Y  A  + V++   TV+K +R
Sbjct: 68  SLTTTTLLSGDQEDDEDEEEPLEE-------LGAMKEMMYKIAAMQSVDIDPATVKKPKR 127

Query: 62  KNVKMSKEPQTVAARKRREKISEKIRVLQRLVPGGSKMDIGSMLDEAASYLKFLRAQIKA 121
           +NV++S +PQ+VAAR RRE+ISE+IR+LQRLVPGG+KMD  SMLDEA  Y+KFL+ QI+ 
Sbjct: 128 RNVRISDDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRL 185

Query: 122 LEGLT 127
           L   T
Sbjct: 188 LNNNT 185

[Close]
BLAST of Cucsa.341410 vs. NCBI nr
Match: gi|449458249|ref|XP_004146860.1| (PREDICTED: transcription factor bHLH87-like [Cucumis sativus])

HSP 1 Score: 293.9 bits (751), Expect = 1.6e-76
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 1 

Query: 1   PSSTNSTTLSPSPSPSSSNIEEIEQAVDRDQVVSQMKEWIYYAAVFRPVNLGLETVEKKR 60
           PSSTNSTTLSPSPSPSSSNIEEIEQAVDRDQVVSQMKEWIYYAAVFRPVNLGLETVEKKR
Sbjct: 123 PSSTNSTTLSPSPSPSSSNIEEIEQAVDRDQVVSQMKEWIYYAAVFRPVNLGLETVEKKR 182

Query: 61  RKNVKMSKEPQTVAARKRREKISEKIRVLQRLVPGGSKMDIGSMLDEAASYLKFLRAQIK 120
           RKNVKMSKEPQTVAARKRREKISEKIRVLQRLVPGGSKMDIGSMLDEAASYLKFLRAQIK
Sbjct: 183 RKNVKMSKEPQTVAARKRREKISEKIRVLQRLVPGGSKMDIGSMLDEAASYLKFLRAQIK 242

Query: 121 ALEGLTYKFGSIDCLSTCTPLNSTFPTNP 150
           ALEGLTYKFGSIDCLSTCTPLNSTFPTNP
Sbjct: 243 ALEGLTYKFGSIDCLSTCTPLNSTFPTNP 271

[Close]
BLAST of Cucsa.341410 vs. NCBI nr
Match: gi|659093530|ref|XP_008447580.1| (PREDICTED: transcription factor bHLH87-like [Cucumis melo])

HSP 1 Score: 262.3 bits (669), Expect = 5.2e-67
Identity = 132/149 (88.59%), Postives = 139/149 (93.29%), Query Frame = 1 

Query: 1   PSSTNSTTLSPSPSPSSSNIEEIEQAVDRDQVVSQMKEWIYYAAVFRPVNLGLETVEKKR 60
           PSSTNSTT SPSPS SSS IEEIEQ VD+D+ VSQMK+WIYYAAVF+PVNLGLETVEKKR
Sbjct: 122 PSSTNSTTPSPSPSSSSSYIEEIEQVVDQDRFVSQMKQWIYYAAVFKPVNLGLETVEKKR 181

Query: 61  RKNVKMSKEPQTVAARKRREKISEKIRVLQRLVPGGSKMDIGSMLDEAASYLKFLRAQIK 120
           R+NVK+SKEPQTVAARKRREKISEKIRVL+RLVPGGSKMDI SMLDEAASYLKFLRAQIK
Sbjct: 182 RRNVKVSKEPQTVAARKRREKISEKIRVLRRLVPGGSKMDIASMLDEAASYLKFLRAQIK 241

Query: 121 ALEGLTYKFGSIDCLSTCTPLNSTFPTNP 150
           ALEGL YKFGS DCLSTCTP N TFPTNP
Sbjct: 242 ALEGLNYKFGSTDCLSTCTPFNPTFPTNP 270

[Close]
BLAST of Cucsa.341410 vs. NCBI nr
Match: gi|645279544|ref|XP_008244773.1| (PREDICTED: transcription factor bHLH87 [Prunus mume])

HSP 1 Score: 163.7 bits (413), Expect = 2.5e-37
Identity = 90/149 (60.40%), Postives = 111/149 (74.50%), Query Frame = 1 

Query: 1   PSSTNSTTLSPSPSPSSSNIEEIEQAVDRDQVVSQMKEWIYYAAVFRPVNLGLETVEKKR 60
           PSS+N     PS S S+S+IEE +      +V++QMKE IY AA FRPVNLG++ VE+ +
Sbjct: 278 PSSSNINFQQPSSSVSASSIEEPDP-----EVIAQMKEMIYRAAAFRPVNLGMDMVERPK 337

Query: 61  RKNVKMSKEPQTVAARKRREKISEKIRVLQRLVPGGSKMDIGSMLDEAASYLKFLRAQIK 120
           RKNVK+S +PQTVAAR+RRE+ISE+IRVLQRLVPGGSKMD  SMLDEAA+YLKFLR+Q+K
Sbjct: 338 RKNVKISSDPQTVAARQRRERISERIRVLQRLVPGGSKMDTASMLDEAANYLKFLRSQVK 397

Query: 121 ALEGLTYKFGSIDCLSTCTPLNSTFPTNP 150
           ALE L  K  S+   S   P +  F  NP
Sbjct: 398 ALENLGQKIESMS-NSNIPPTSFAFSFNP 420

[Close]
BLAST of Cucsa.341410 vs. NCBI nr
Match: gi|658031773|ref|XP_008351374.1| (PREDICTED: transcription factor bHLH87-like [Malus domestica])

HSP 1 Score: 162.9 bits (411), Expect = 4.3e-37
Identity = 89/147 (60.54%), Postives = 110/147 (74.83%), Query Frame = 1 

Query: 1   PSSTNSTTLSPSPSPSSSNIEEIEQAVDRDQVVSQMKEWIYYAAVFRPVNLGLETVEKKR 60
           PSS+N +   P+ S S+S+IEE +      +V++QMKE IY AA FRPVNLGLE VE+ +
Sbjct: 228 PSSSNISFQQPTSSVSTSSIEEPDP-----EVIAQMKEMIYRAAAFRPVNLGLELVERPK 287

Query: 61  RKNVKMSKEPQTVAARKRREKISEKIRVLQRLVPGGSKMDIGSMLDEAASYLKFLRAQIK 120
           RKNVK+S +PQTVAAR+RRE+ISE+IR+LQR+VPGGSKMD  SMLDEAA+YLKFLRAQ+K
Sbjct: 288 RKNVKISSDPQTVAARQRRERISERIRILQRMVPGGSKMDTASMLDEAANYLKFLRAQVK 347

Query: 121 ALEGLTYKFGSIDCLSTCTPLNSTFPT 148
           ALE L  K  S+         NS  PT
Sbjct: 348 ALENLGQKIESMS--------NSNIPT 361

[Close]
BLAST of Cucsa.341410 vs. NCBI nr
Match: gi|743935373|ref|XP_011012055.1| (PREDICTED: transcription factor bHLH87 [Populus euphratica])

HSP 1 Score: 162.2 bits (409), Expect = 7.3e-37
Identity = 90/152 (59.21%), Postives = 111/152 (73.03%), Query Frame = 1 

Query: 1   PSSTNSTTLSPSPSPSSSNIEEIEQAVDRDQVVSQMKEWIYYAAVFRPVNLGLETVEKKR 60
           PSS+N     PS S SSS IEE +      + ++QMKE IY AA FRPVNLGLE  EK +
Sbjct: 280 PSSSNINFQQPSSSISSS-IEEPDP-----EAIAQMKEMIYRAAAFRPVNLGLEVAEKPK 339

Query: 61  RKNVKMSKEPQTVAARKRREKISEKIRVLQRLVPGGSKMDIGSMLDEAASYLKFLRAQIK 120
           RKNV++S +PQTVAAR+RRE+IS++IRVLQRLVPGGSKMD  SMLDEAA+YLKFLR+Q+K
Sbjct: 340 RKNVRISLDPQTVAARQRRERISDRIRVLQRLVPGGSKMDTASMLDEAANYLKFLRSQVK 399

Query: 121 ALEGLTYKFGSIDCLS------TCTPLNSTFP 147
           ALE L +K  S++C        +  P N +FP
Sbjct: 400 ALENLGHKLDSVNCSQPPNIAFSSLPFNHSFP 425

The following BLAST results are available for this feature:
BLAST of Cucsa.341410 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BH087_ARATH4.4e-3465.52Transcription factor bHLH87 OS=Arabidopsis thaliana GN=BHLH87 PE=2 SV=1[more]
HEC2_ARATH1.3e-2553.57Transcription factor HEC2 OS=Arabidopsis thaliana GN=HEC2 PE=1 SV=1[more]
HEC1_ARATH8.3e-2546.72Transcription factor HEC1 OS=Arabidopsis thaliana GN=HEC1 PE=1 SV=1[more]
IND_ARATH1.6e-2348.62Transcription factor IND OS=Arabidopsis thaliana GN=IND PE=1 SV=3[more]
HEC3_ARATH6.0e-2347.20Transcription factor HEC3 OS=Arabidopsis thaliana GN=HEC3 PE=1 SV=1[more]
BLAST of Cucsa.341410 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LDH7_CUCSA1.1e-76100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G850530 PE=4 SV=1[more]
M5X9H7_PRUPE5.1e-3759.73Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015446mg PE=4 SV=1[more]
A0A061GAT2_THECC8.6e-3760.40Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 2 OS=Th... [more]
A0A061GIV9_THECC8.6e-3760.40Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 1 OS=Th... [more]
F6HY46_VITVI1.1e-3657.62Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0002g02700 PE=4 SV=... [more]
BLAST of Cucsa.341410 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G21330.12.5e-3565.52 basic helix-loop-helix (bHLH) DNA-binding superfamily protein[more]
AT3G50330.17.2e-2753.57 basic helix-loop-helix (bHLH) DNA-binding superfamily protein[more]
AT5G67060.14.7e-2646.72 basic helix-loop-helix (bHLH) DNA-binding superfamily protein[more]
AT4G00120.18.8e-2548.62 basic helix-loop-helix (bHLH) DNA-binding superfamily protein[more]
AT5G09750.13.4e-2447.20 basic helix-loop-helix (bHLH) DNA-binding superfamily protein[more]
BLAST of Cucsa.341410 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449458249|ref|XP_004146860.1|1.6e-76100.00PREDICTED: transcription factor bHLH87-like [Cucumis sativus][more]
gi|659093530|ref|XP_008447580.1|5.2e-6788.59PREDICTED: transcription factor bHLH87-like [Cucumis melo][more]
gi|645279544|ref|XP_008244773.1|2.5e-3760.40PREDICTED: transcription factor bHLH87 [Prunus mume][more]
gi|658031773|ref|XP_008351374.1|4.3e-3760.54PREDICTED: transcription factor bHLH87-like [Malus domestica][more]
gi|743935373|ref|XP_011012055.1|7.3e-3759.21PREDICTED: transcription factor bHLH87 [Populus euphratica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR011598bHLH_dom
Vocabulary: Molecular Function
TermDefinition
GO:0046983protein dimerization activity
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0008150 biological_process
cellular_component GO:0005667 transcription factor complex
cellular_component GO:0005575 cellular_component
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.341410.1Cucsa.341410.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainGENE3DG3DSA:4.10.280.10coord: 67..123
score: 1.9
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPFAMPF00010HLHcoord: 75..115
score: 1.
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainSMARTSM00353finuluscoord: 72..121
score: 8.2
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPROFILEPS50888BHLHcoord: 66..115
score: 14
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainunknownSSF47459HLH, helix-loop-helix DNA-binding domaincoord: 69..126
score: 4.45
NoneNo IPR availablePANTHERPTHR12565STEROL REGULATORY ELEMENT-BINDING PROTEINcoord: 1..123
score: 3.0
NoneNo IPR availablePANTHERPTHR12565:SF174TRANSCRIPTION FACTOR BHLH87coord: 1..123
score: 3.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.341410Cla012633Watermelon (97103) v1cgywmB611
Cucsa.341410Cla015607Watermelon (97103) v1cgywmB608
Cucsa.341410Csa7G452040Cucumber (Chinese Long) v2cgycuB485
Cucsa.341410Csa3G850530Cucumber (Chinese Long) v2cgycuB478
Cucsa.341410MELO3C024411Melon (DHL92) v3.5.1cgymeB553
Cucsa.341410MELO3C013023Melon (DHL92) v3.5.1cgymeB560
Cucsa.341410ClCG07G013530Watermelon (Charleston Gray)cgywcgB589
Cucsa.341410ClCG09G000460Watermelon (Charleston Gray)cgywcgB578
Cucsa.341410CSPI03G41690Wild cucumber (PI 183967)cgycpiB504
Cucsa.341410CSPI07G23080Wild cucumber (PI 183967)cgycpiB511
Cucsa.341410CmaCh14G012810Cucurbita maxima (Rimu)cgycmaB0927
Cucsa.341410CmaCh01G000810Cucurbita maxima (Rimu)cgycmaB0935
Cucsa.341410CmaCh08G007520Cucurbita maxima (Rimu)cgycmaB0946
Cucsa.341410CmoCh08G007180Cucurbita moschata (Rifu)cgycmoB0946
Cucsa.341410CmoCh01G000800Cucurbita moschata (Rifu)cgycmoB0935
Cucsa.341410CmoCh17G007170Cucurbita moschata (Rifu)cgycmoB0933
Cucsa.341410CmoCh14G013140Cucurbita moschata (Rifu)cgycmoB0927
Cucsa.341410Lsi07G005480Bottle gourd (USVL1VR-Ls)cgylsiB556
Cucsa.341410Lsi02G029600Bottle gourd (USVL1VR-Ls)cgylsiB548
Cucsa.341410Cp4.1LG02g14290Cucurbita pepo (Zucchini)cgycpeB0886
Cucsa.341410Cp4.1LG03g14310Cucurbita pepo (Zucchini)cgycpeB0889
Cucsa.341410Cp4.1LG12g08690Cucurbita pepo (Zucchini)cgycpeB0878
Cucsa.341410Cp4.1LG17g05170Cucurbita pepo (Zucchini)cgycpeB0882
Cucsa.341410MELO3C024411.2Melon (DHL92) v3.6.1cgymedB554
Cucsa.341410MELO3C013023.2Melon (DHL92) v3.6.1cgymedB561
Cucsa.341410CsaV3_7G035000Cucumber (Chinese Long) v3cgycucB528
Cucsa.341410CsaV3_3G044120Cucumber (Chinese Long) v3cgycucB523
Cucsa.341410Cla97C07G140340Watermelon (97103) v2cgywmbB589
Cucsa.341410Cla97C09G162350Watermelon (97103) v2cgywmbB592
Cucsa.341410Bhi09G000329Wax gourdcgywgoB691
Cucsa.341410Bhi01G002590Wax gourdcgywgoB680
Cucsa.341410Carg09481Silver-seed gourdcarcgyB1146
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cucsa.341410Cucsa.360770Cucumber (Gy14) v1cgycgyB147
The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.341410Cucurbita maxima (Rimu)cgycmaB0933
Cucsa.341410Silver-seed gourdcarcgyB0144