Cucsa.341410.1 (mRNA) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.341410.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Basic helix-loop-helix transcription factor
Location	scaffold03356 : 3795413 .. 3795862 (+)
Sequence length	450

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CCAAGTTCAACCAACTCTACAACTCTATCACCATCTCCCTCTCCATCATCTTCGAACATCGAAGAAATCGAGCAGGCTGTTGATCGAGATCAAGTTGTGTCACAAATGAAGGAATGGATATACTATGCAGCGGTGTTTAGGCCAGTAAACTTGGGATTGGAGACGGTGGAGAAGAAGAGGCGGAAGAACGTCAAAATGTCGAAGGAGCCTCAAACGGTTGCGGCAAGAAAACGAAGGGAGAAAATAAGCGAAAAAaTTAGGGTTTTGCAGAGGTTAGTTCCTGGTGGTAGCAAAATGGACATTGGCTCCATGCTTGACGAGGCAGCAAGCTACCTCAAGTTCCTTAGGGCACAAATCAAAGCACTAGAAGGCTTAACCTACAAATTTGGCTCTATAGATTGTCTCTCAACTTGCACCCCTTTGAACTCTACTTTCCCCACAAATCCTTAA

mRNA sequence

CCAAGTTCAACCAACTCTACAACTCTATCACCATCTCCCTCTCCATCATCTTCGAACATCGAAGAAATCGAGCAGGCTGTTGATCGAGATCAAGTTGTGTCACAAATGAAGGAATGGATATACTATGCAGCGGTGTTTAGGCCAGTAAACTTGGGATTGGAGACGGTGGAGAAGAAGAGGCGGAAGAACGTCAAAATGTCGAAGGAGCCTCAAACGGTTGCGGCAAGAAAACGAAGGGAGAAAATAAGCGAAAAAATTAGGGTTTTGCAGAGGTTAGTTCCTGGTGGTAGCAAAATGGACATTGGCTCCATGCTTGACGAGGCAGCAAGCTACCTCAAGTTCCTTAGGGCACAAATCAAAGCACTAGAAGGCTTAACCTACAAATTTGGCTCTATAGATTGTCTCTCAACTTGCACCCCTTTGAACTCTACTTTCCCCACAAATCCTTAA

Coding sequence (CDS)

CCAAGTTCAACCAACTCTACAACTCTATCACCATCTCCCTCTCCATCATCTTCGAACATCGAAGAAATCGAGCAGGCTGTTGATCGAGATCAAGTTGTGTCACAAATGAAGGAATGGATATACTATGCAGCGGTGTTTAGGCCAGTAAACTTGGGATTGGAGACGGTGGAGAAGAAGAGGCGGAAGAACGTCAAAATGTCGAAGGAGCCTCAAACGGTTGCGGCAAGAAAACGAAGGGAGAAAATAAGCGAAAAAaTTAGGGTTTTGCAGAGGTTAGTTCCTGGTGGTAGCAAAATGGACATTGGCTCCATGCTTGACGAGGCAGCAAGCTACCTCAAGTTCCTTAGGGCACAAATCAAAGCACTAGAAGGCTTAACCTACAAATTTGGCTCTATAGATTGTCTCTCAACTTGCACCCCTTTGAACTCTACTTTCCCCACAAATCCTTAA

Protein sequence

PSSTNSTTLSPSPSPSSSNIEEIEQAVDRDQVVSQMKEWIYYAAVFRPVNLGLETVEKKRRKNVKMSKEPQTVAARKRREKISEKIRVLQRLVPGGSKMDIGSMLDEAASYLKFLRAQIKALEGLTYKFGSIDCLSTCTPLNSTFPTNP*

Homology

[Close]

BLAST of Cucsa.341410.1 vs. Swiss-Prot
Match: BH087_ARATH (Transcription factor bHLH87 OS=Arabidopsis thaliana GN=BHLH87 PE=2 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 4.4e-34
Identity = 76/116 (65.52%), Postives = 91/116 (78.45%), Query Frame = 1


Query: 31  QVVSQMKEWIYYAAVFRPVNLGLETVEKKRRKNVKMSKEPQTVAARKRREKISEKIRVLQ 90
           + ++QMKE IY AA FRPVN GLE VEK +RKNVK+S +PQTVAAR+RRE+ISEKIRVLQ
Sbjct: 240 EAIAQMKEMIYRAAAFRPVNFGLEIVEKPKRKNVKISTDPQTVAARQRRERISEKIRVLQ 299

Query: 91  RLVPGGSKMDIGSMLDEAASYLKFLRAQIKALEGLTYKFGSIDCLSTCTPLNSTFP 147
            LVPGG+KMD  SMLDEAA+YLKFLRAQ+KALE L  K    +   +  P  ++FP
Sbjct: 300 TLVPGGTKMDTASMLDEAANYLKFLRAQVKALENLRPKLDQTNLSFSSAP--TSFP 353

[Close]

BLAST of Cucsa.341410.1 vs. Swiss-Prot
Match: HEC2_ARATH (Transcription factor HEC2 OS=Arabidopsis thaliana GN=HEC2 PE=1 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 1.3e-25
Identity = 60/112 (53.57%), Postives = 86/112 (76.79%), Query Frame = 1


Query: 12  SPSPSSSNIEEIEQAVDRDQVVSQMKEWIYYAAVFRPVNLGLETVEKKRRKNVKMSKEPQ 71
           +PSPSSS  E+     D   + + M+E I+  AV +P+++  E+V+  +RKNV++SK+PQ
Sbjct: 72  APSPSSSLPEKRGGCSDNANMAA-MREMIFRIAVMQPIHIDPESVKPPKRKNVRISKDPQ 131

Query: 72  TVAARKRREKISEKIRVLQRLVPGGSKMDIGSMLDEAASYLKFLRAQIKALE 124
           +VAAR RRE+ISE+IR+LQRLVPGG+KMD  SMLDEA  Y+KFL+ Q+++LE
Sbjct: 132 SVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQSLE 182

[Close]

BLAST of Cucsa.341410.1 vs. Swiss-Prot
Match: HEC1_ARATH (Transcription factor HEC1 OS=Arabidopsis thaliana GN=HEC1 PE=1 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 8.3e-25
Identity = 57/122 (46.72%), Postives = 91/122 (74.59%), Query Frame = 1


Query: 4   TNSTTLSPSPSPSSSNIEEIEQAVDRDQVVSQ--MKEWIYYAAVFRPVNLGLETVEKKRR 63
           TN +++SP+ + SS  +++   + + +   +   M+E I+  AV +P+++  E V+  +R
Sbjct: 64  TNPSSISPNTAYSSVFLDKRNNSNNNNNGTNMAAMREMIFRIAVMQPIHIDPEAVKPPKR 123

Query: 64  KNVKMSKEPQTVAARKRREKISEKIRVLQRLVPGGSKMDIGSMLDEAASYLKFLRAQIKA 123
           +NV++SK+PQ+VAAR RRE+ISE+IR+LQRLVPGG+KMD  SMLDEA  Y+KFL+ Q+++
Sbjct: 124 RNVRISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQS 183

[Close]

BLAST of Cucsa.341410.1 vs. Swiss-Prot
Match: IND_ARATH (Transcription factor IND OS=Arabidopsis thaliana GN=IND PE=1 SV=3)

HSP 1 Score: 110.5 bits (275), Expect = 1.6e-23
Identity = 53/109 (48.62%), Postives = 77/109 (70.64%), Query Frame = 1


Query: 15  PSSSNIEEIEQAVDRDQVVSQMKEWIYYAAVFRPVNLGLETVEKKRRKNVKMSKEPQTVA 74
           P    +  +++  + D+ +  MKE  Y  AV +PV++   TV K  R+NV++S +PQTV 
Sbjct: 67  PPPETLIHLDEDEEYDEDMDAMKEMQYMIAVMQPVDIDPATVPKPNRRNVRISDDPQTVV 126

Query: 75  ARKRREKISEKIRVLQRLVPGGSKMDIGSMLDEAASYLKFLRAQIKALE 124
           AR+RRE+ISEKIR+L+R+VPGG+KMD  SMLDEA  Y KFL+ Q++ L+
Sbjct: 127 ARRRRERISEKIRILKRIVPGGAKMDTASMLDEAIRYTKFLKRQVRILQ 175

[Close]

BLAST of Cucsa.341410.1 vs. Swiss-Prot
Match: HEC3_ARATH (Transcription factor HEC3 OS=Arabidopsis thaliana GN=HEC3 PE=1 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 6.0e-23
Identity = 59/125 (47.20%), Postives = 81/125 (64.80%), Query Frame = 1


Query: 2   SSTNSTTLSPSPSPSSSNIEEIEQAVDRDQVVSQMKEWIYYAAVFRPVNLGLETVEKKRR 61
           S T +T LS          E +E+       +  MKE +Y  A  + V++   TV+K +R
Sbjct: 68  SLTTTTLLSGDQEDDEDEEEPLEE-------LGAMKEMMYKIAAMQSVDIDPATVKKPKR 127

Query: 62  KNVKMSKEPQTVAARKRREKISEKIRVLQRLVPGGSKMDIGSMLDEAASYLKFLRAQIKA 121
           +NV++S +PQ+VAAR RRE+ISE+IR+LQRLVPGG+KMD  SMLDEA  Y+KFL+ QI+ 
Sbjct: 128 RNVRISDDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRL 185

Query: 122 LEGLT 127
           L   T
Sbjct: 188 LNNNT 185

[Close]

BLAST of Cucsa.341410.1 vs. TrEMBL
Match: A0A0A0LDH7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G850530 PE=4 SV=1)

HSP 1 Score: 293.9 bits (751), Expect = 1.1e-76
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 1


Query: 1   PSSTNSTTLSPSPSPSSSNIEEIEQAVDRDQVVSQMKEWIYYAAVFRPVNLGLETVEKKR 60
           PSSTNSTTLSPSPSPSSSNIEEIEQAVDRDQVVSQMKEWIYYAAVFRPVNLGLETVEKKR
Sbjct: 123 PSSTNSTTLSPSPSPSSSNIEEIEQAVDRDQVVSQMKEWIYYAAVFRPVNLGLETVEKKR 182

Query: 61  RKNVKMSKEPQTVAARKRREKISEKIRVLQRLVPGGSKMDIGSMLDEAASYLKFLRAQIK 120
           RKNVKMSKEPQTVAARKRREKISEKIRVLQRLVPGGSKMDIGSMLDEAASYLKFLRAQIK
Sbjct: 183 RKNVKMSKEPQTVAARKRREKISEKIRVLQRLVPGGSKMDIGSMLDEAASYLKFLRAQIK 242

Query: 121 ALEGLTYKFGSIDCLSTCTPLNSTFPTNP 150
           ALEGLTYKFGSIDCLSTCTPLNSTFPTNP
Sbjct: 243 ALEGLTYKFGSIDCLSTCTPLNSTFPTNP 271

[Close]

BLAST of Cucsa.341410.1 vs. TrEMBL
Match: M5X9H7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015446mg PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 5.1e-37
Identity = 89/149 (59.73%), Postives = 110/149 (73.83%), Query Frame = 1


Query: 1   PSSTNSTTLSPSPSPSSSNIEEIEQAVDRDQVVSQMKEWIYYAAVFRPVNLGLETVEKKR 60
           PSS+N     PS S S+S+IEE +      +V++QMKE IY AA FRPVNLG++ VE+ +
Sbjct: 263 PSSSNINFQQPSSSVSASSIEEPDP-----EVIAQMKEMIYRAAAFRPVNLGMDMVERPK 322

Query: 61  RKNVKMSKEPQTVAARKRREKISEKIRVLQRLVPGGSKMDIGSMLDEAASYLKFLRAQIK 120
           RKNVK+S +PQTVAAR+RRE+ISE+IRVLQRLVPGG KMD  SMLDEAA+YLKFLR+Q+K
Sbjct: 323 RKNVKISSDPQTVAARQRRERISERIRVLQRLVPGGGKMDTASMLDEAANYLKFLRSQVK 382

Query: 121 ALEGLTYKFGSIDCLSTCTPLNSTFPTNP 150
           ALE L  K  S+   S   P +  F  NP
Sbjct: 383 ALENLGQKIESMS-NSNIPPASFAFSFNP 405

[Close]

BLAST of Cucsa.341410.1 vs. TrEMBL
Match: A0A061GAT2_THECC (Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 2 OS=Theobroma cacao GN=TCM_028961 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 8.6e-37
Identity = 90/149 (60.40%), Postives = 110/149 (73.83%), Query Frame = 1


Query: 1   PSSTNSTTLSPSPSPSSSNIEEIEQAVDRDQVVSQMKEWIYYAAVFRPVNLGLETVEKKR 60
           PSS+N     PS S SSS IEE +      + ++QMKE IY AA FRPV+LGLE VEK +
Sbjct: 312 PSSSNINFQQPSSSVSSS-IEEPDP-----EAIAQMKEMIYRAAAFRPVSLGLEVVEKPK 371

Query: 61  RKNVKMSKEPQTVAARKRREKISEKIRVLQRLVPGGSKMDIGSMLDEAASYLKFLRAQIK 120
           RKNV++S +PQTVAAR+RRE+ISE+IRVLQRLVPGGSKMD  SMLDEAA+YLKFLR+Q+K
Sbjct: 372 RKNVRISTDPQTVAARQRRERISERIRVLQRLVPGGSKMDTASMLDEAANYLKFLRSQVK 431

Query: 121 ALEGLTYKFGSIDCLSTCTPLNSTFPTNP 150
           ALE L +K   ++    C P N  F + P
Sbjct: 432 ALENLGHKLDPVN----CPPTNHAFSSLP 450

[Close]

BLAST of Cucsa.341410.1 vs. TrEMBL
Match: A0A061GIV9_THECC (Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 1 OS=Theobroma cacao GN=TCM_028961 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 8.6e-37
Identity = 90/149 (60.40%), Postives = 110/149 (73.83%), Query Frame = 1


Query: 1   PSSTNSTTLSPSPSPSSSNIEEIEQAVDRDQVVSQMKEWIYYAAVFRPVNLGLETVEKKR 60
           PSS+N     PS S SSS IEE +      + ++QMKE IY AA FRPV+LGLE VEK +
Sbjct: 312 PSSSNINFQQPSSSVSSS-IEEPDP-----EAIAQMKEMIYRAAAFRPVSLGLEVVEKPK 371

Query: 61  RKNVKMSKEPQTVAARKRREKISEKIRVLQRLVPGGSKMDIGSMLDEAASYLKFLRAQIK 120
           RKNV++S +PQTVAAR+RRE+ISE+IRVLQRLVPGGSKMD  SMLDEAA+YLKFLR+Q+K
Sbjct: 372 RKNVRISTDPQTVAARQRRERISERIRVLQRLVPGGSKMDTASMLDEAANYLKFLRSQVK 431

Query: 121 ALEGLTYKFGSIDCLSTCTPLNSTFPTNP 150
           ALE L +K   ++    C P N  F + P
Sbjct: 432 ALENLGHKLDPVN----CPPTNHAFSSLP 450

[Close]

BLAST of Cucsa.341410.1 vs. TrEMBL
Match: F6HY46_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0002g02700 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 1.1e-36
Identity = 87/151 (57.62%), Postives = 111/151 (73.51%), Query Frame = 1


Query: 1   PSSTNSTTLSPSPSPSSSNIEEIEQAVDRDQVVSQMKEWIYYAAVFRPVNLGLETVEKKR 60
           PSS+N     PS S SS  +EE +      + ++QMKE IY AA FRPVN G++ VEK +
Sbjct: 310 PSSSNINFQQPSSSASS--VEEPDS-----EAIAQMKEIIYRAAAFRPVNFGMDAVEKPK 369

Query: 61  RKNVKMSKEPQTVAARKRREKISEKIRVLQRLVPGGSKMDIGSMLDEAASYLKFLRAQIK 120
           RKNV++S +PQTVAAR+RRE+ISE+IRVLQRLVPGG+KMD  SMLDEAA+YLKFLR+Q+K
Sbjct: 370 RKNVRISTDPQTVAARQRRERISERIRVLQRLVPGGNKMDTASMLDEAANYLKFLRSQVK 429

Query: 121 ALEGLTYKFGSIDCLST-----CTPLNSTFP 147
           ALE L +K  S++C+ T       P N +FP
Sbjct: 430 ALETLGHKLDSVNCVHTNLPFSALPFNHSFP 453

[Close]

BLAST of Cucsa.341410.1 vs. TAIR10
Match: AT3G21330.1 (AT3G21330.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 145.6 bits (366), Expect = 2.5e-35
Identity = 76/116 (65.52%), Postives = 91/116 (78.45%), Query Frame = 1


Query: 31  QVVSQMKEWIYYAAVFRPVNLGLETVEKKRRKNVKMSKEPQTVAARKRREKISEKIRVLQ 90
           + ++QMKE IY AA FRPVN GLE VEK +RKNVK+S +PQTVAAR+RRE+ISEKIRVLQ
Sbjct: 240 EAIAQMKEMIYRAAAFRPVNFGLEIVEKPKRKNVKISTDPQTVAARQRRERISEKIRVLQ 299

Query: 91  RLVPGGSKMDIGSMLDEAASYLKFLRAQIKALEGLTYKFGSIDCLSTCTPLNSTFP 147
            LVPGG+KMD  SMLDEAA+YLKFLRAQ+KALE L  K    +   +  P  ++FP
Sbjct: 300 TLVPGGTKMDTASMLDEAANYLKFLRAQVKALENLRPKLDQTNLSFSSAP--TSFP 353

[Close]

BLAST of Cucsa.341410.1 vs. TAIR10
Match: AT3G50330.1 (AT3G50330.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 117.5 bits (293), Expect = 7.2e-27
Identity = 60/112 (53.57%), Postives = 86/112 (76.79%), Query Frame = 1


Query: 12  SPSPSSSNIEEIEQAVDRDQVVSQMKEWIYYAAVFRPVNLGLETVEKKRRKNVKMSKEPQ 71
           +PSPSSS  E+     D   + + M+E I+  AV +P+++  E+V+  +RKNV++SK+PQ
Sbjct: 72  APSPSSSLPEKRGGCSDNANMAA-MREMIFRIAVMQPIHIDPESVKPPKRKNVRISKDPQ 131

Query: 72  TVAARKRREKISEKIRVLQRLVPGGSKMDIGSMLDEAASYLKFLRAQIKALE 124
           +VAAR RRE+ISE+IR+LQRLVPGG+KMD  SMLDEA  Y+KFL+ Q+++LE
Sbjct: 132 SVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQSLE 182

[Close]

BLAST of Cucsa.341410.1 vs. TAIR10
Match: AT5G67060.1 (AT5G67060.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 114.8 bits (286), Expect = 4.7e-26
Identity = 57/122 (46.72%), Postives = 91/122 (74.59%), Query Frame = 1


Query: 4   TNSTTLSPSPSPSSSNIEEIEQAVDRDQVVSQ--MKEWIYYAAVFRPVNLGLETVEKKRR 63
           TN +++SP+ + SS  +++   + + +   +   M+E I+  AV +P+++  E V+  +R
Sbjct: 64  TNPSSISPNTAYSSVFLDKRNNSNNNNNGTNMAAMREMIFRIAVMQPIHIDPEAVKPPKR 123

Query: 64  KNVKMSKEPQTVAARKRREKISEKIRVLQRLVPGGSKMDIGSMLDEAASYLKFLRAQIKA 123
           +NV++SK+PQ+VAAR RRE+ISE+IR+LQRLVPGG+KMD  SMLDEA  Y+KFL+ Q+++
Sbjct: 124 RNVRISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQS 183

[Close]

BLAST of Cucsa.341410.1 vs. TAIR10
Match: AT4G00120.1 (AT4G00120.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 110.5 bits (275), Expect = 8.8e-25
Identity = 53/109 (48.62%), Postives = 77/109 (70.64%), Query Frame = 1


Query: 15  PSSSNIEEIEQAVDRDQVVSQMKEWIYYAAVFRPVNLGLETVEKKRRKNVKMSKEPQTVA 74
           P    +  +++  + D+ +  MKE  Y  AV +PV++   TV K  R+NV++S +PQTV 
Sbjct: 67  PPPETLIHLDEDEEYDEDMDAMKEMQYMIAVMQPVDIDPATVPKPNRRNVRISDDPQTVV 126

Query: 75  ARKRREKISEKIRVLQRLVPGGSKMDIGSMLDEAASYLKFLRAQIKALE 124
           AR+RRE+ISEKIR+L+R+VPGG+KMD  SMLDEA  Y KFL+ Q++ L+
Sbjct: 127 ARRRRERISEKIRILKRIVPGGAKMDTASMLDEAIRYTKFLKRQVRILQ 175

[Close]

BLAST of Cucsa.341410.1 vs. TAIR10
Match: AT5G09750.1 (AT5G09750.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 108.6 bits (270), Expect = 3.4e-24
Identity = 59/125 (47.20%), Postives = 81/125 (64.80%), Query Frame = 1


Query: 2   SSTNSTTLSPSPSPSSSNIEEIEQAVDRDQVVSQMKEWIYYAAVFRPVNLGLETVEKKRR 61
           S T +T LS          E +E+       +  MKE +Y  A  + V++   TV+K +R
Sbjct: 68  SLTTTTLLSGDQEDDEDEEEPLEE-------LGAMKEMMYKIAAMQSVDIDPATVKKPKR 127

Query: 62  KNVKMSKEPQTVAARKRREKISEKIRVLQRLVPGGSKMDIGSMLDEAASYLKFLRAQIKA 121
           +NV++S +PQ+VAAR RRE+ISE+IR+LQRLVPGG+KMD  SMLDEA  Y+KFL+ QI+ 
Sbjct: 128 RNVRISDDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRL 185

Query: 122 LEGLT 127
           L   T
Sbjct: 188 LNNNT 185

[Close]

BLAST of Cucsa.341410.1 vs. NCBI nr
Match: gi|449458249|ref|XP_004146860.1| (PREDICTED: transcription factor bHLH87-like [Cucumis sativus])

HSP 1 Score: 293.9 bits (751), Expect = 1.6e-76
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 1


Query: 1   PSSTNSTTLSPSPSPSSSNIEEIEQAVDRDQVVSQMKEWIYYAAVFRPVNLGLETVEKKR 60
           PSSTNSTTLSPSPSPSSSNIEEIEQAVDRDQVVSQMKEWIYYAAVFRPVNLGLETVEKKR
Sbjct: 123 PSSTNSTTLSPSPSPSSSNIEEIEQAVDRDQVVSQMKEWIYYAAVFRPVNLGLETVEKKR 182

Query: 61  RKNVKMSKEPQTVAARKRREKISEKIRVLQRLVPGGSKMDIGSMLDEAASYLKFLRAQIK 120
           RKNVKMSKEPQTVAARKRREKISEKIRVLQRLVPGGSKMDIGSMLDEAASYLKFLRAQIK
Sbjct: 183 RKNVKMSKEPQTVAARKRREKISEKIRVLQRLVPGGSKMDIGSMLDEAASYLKFLRAQIK 242

Query: 121 ALEGLTYKFGSIDCLSTCTPLNSTFPTNP 150
           ALEGLTYKFGSIDCLSTCTPLNSTFPTNP
Sbjct: 243 ALEGLTYKFGSIDCLSTCTPLNSTFPTNP 271

[Close]

BLAST of Cucsa.341410.1 vs. NCBI nr
Match: gi|659093530|ref|XP_008447580.1| (PREDICTED: transcription factor bHLH87-like [Cucumis melo])

HSP 1 Score: 262.3 bits (669), Expect = 5.2e-67
Identity = 132/149 (88.59%), Postives = 139/149 (93.29%), Query Frame = 1


Query: 1   PSSTNSTTLSPSPSPSSSNIEEIEQAVDRDQVVSQMKEWIYYAAVFRPVNLGLETVEKKR 60
           PSSTNSTT SPSPS SSS IEEIEQ VD+D+ VSQMK+WIYYAAVF+PVNLGLETVEKKR
Sbjct: 122 PSSTNSTTPSPSPSSSSSYIEEIEQVVDQDRFVSQMKQWIYYAAVFKPVNLGLETVEKKR 181

Query: 61  RKNVKMSKEPQTVAARKRREKISEKIRVLQRLVPGGSKMDIGSMLDEAASYLKFLRAQIK 120
           R+NVK+SKEPQTVAARKRREKISEKIRVL+RLVPGGSKMDI SMLDEAASYLKFLRAQIK
Sbjct: 182 RRNVKVSKEPQTVAARKRREKISEKIRVLRRLVPGGSKMDIASMLDEAASYLKFLRAQIK 241

Query: 121 ALEGLTYKFGSIDCLSTCTPLNSTFPTNP 150
           ALEGL YKFGS DCLSTCTP N TFPTNP
Sbjct: 242 ALEGLNYKFGSTDCLSTCTPFNPTFPTNP 270

[Close]

BLAST of Cucsa.341410.1 vs. NCBI nr
Match: gi|645279544|ref|XP_008244773.1| (PREDICTED: transcription factor bHLH87 [Prunus mume])

HSP 1 Score: 163.7 bits (413), Expect = 2.5e-37
Identity = 90/149 (60.40%), Postives = 111/149 (74.50%), Query Frame = 1


Query: 1   PSSTNSTTLSPSPSPSSSNIEEIEQAVDRDQVVSQMKEWIYYAAVFRPVNLGLETVEKKR 60
           PSS+N     PS S S+S+IEE +      +V++QMKE IY AA FRPVNLG++ VE+ +
Sbjct: 278 PSSSNINFQQPSSSVSASSIEEPDP-----EVIAQMKEMIYRAAAFRPVNLGMDMVERPK 337

Query: 61  RKNVKMSKEPQTVAARKRREKISEKIRVLQRLVPGGSKMDIGSMLDEAASYLKFLRAQIK 120
           RKNVK+S +PQTVAAR+RRE+ISE+IRVLQRLVPGGSKMD  SMLDEAA+YLKFLR+Q+K
Sbjct: 338 RKNVKISSDPQTVAARQRRERISERIRVLQRLVPGGSKMDTASMLDEAANYLKFLRSQVK 397

Query: 121 ALEGLTYKFGSIDCLSTCTPLNSTFPTNP 150
           ALE L  K  S+   S   P +  F  NP
Sbjct: 398 ALENLGQKIESMS-NSNIPPTSFAFSFNP 420

[Close]

BLAST of Cucsa.341410.1 vs. NCBI nr
Match: gi|658031773|ref|XP_008351374.1| (PREDICTED: transcription factor bHLH87-like [Malus domestica])

HSP 1 Score: 162.9 bits (411), Expect = 4.3e-37
Identity = 89/147 (60.54%), Postives = 110/147 (74.83%), Query Frame = 1


Query: 1   PSSTNSTTLSPSPSPSSSNIEEIEQAVDRDQVVSQMKEWIYYAAVFRPVNLGLETVEKKR 60
           PSS+N +   P+ S S+S+IEE +      +V++QMKE IY AA FRPVNLGLE VE+ +
Sbjct: 228 PSSSNISFQQPTSSVSTSSIEEPDP-----EVIAQMKEMIYRAAAFRPVNLGLELVERPK 287

Query: 61  RKNVKMSKEPQTVAARKRREKISEKIRVLQRLVPGGSKMDIGSMLDEAASYLKFLRAQIK 120
           RKNVK+S +PQTVAAR+RRE+ISE+IR+LQR+VPGGSKMD  SMLDEAA+YLKFLRAQ+K
Sbjct: 288 RKNVKISSDPQTVAARQRRERISERIRILQRMVPGGSKMDTASMLDEAANYLKFLRAQVK 347

Query: 121 ALEGLTYKFGSIDCLSTCTPLNSTFPT 148
           ALE L  K  S+         NS  PT
Sbjct: 348 ALENLGQKIESMS--------NSNIPT 361

[Close]

BLAST of Cucsa.341410.1 vs. NCBI nr
Match: gi|743935373|ref|XP_011012055.1| (PREDICTED: transcription factor bHLH87 [Populus euphratica])

HSP 1 Score: 162.2 bits (409), Expect = 7.3e-37
Identity = 90/152 (59.21%), Postives = 111/152 (73.03%), Query Frame = 1


Query: 1   PSSTNSTTLSPSPSPSSSNIEEIEQAVDRDQVVSQMKEWIYYAAVFRPVNLGLETVEKKR 60
           PSS+N     PS S SSS IEE +      + ++QMKE IY AA FRPVNLGLE  EK +
Sbjct: 280 PSSSNINFQQPSSSISSS-IEEPDP-----EAIAQMKEMIYRAAAFRPVNLGLEVAEKPK 339

Query: 61  RKNVKMSKEPQTVAARKRREKISEKIRVLQRLVPGGSKMDIGSMLDEAASYLKFLRAQIK 120
           RKNV++S +PQTVAAR+RRE+IS++IRVLQRLVPGGSKMD  SMLDEAA+YLKFLR+Q+K
Sbjct: 340 RKNVRISLDPQTVAARQRRERISDRIRVLQRLVPGGSKMDTASMLDEAANYLKFLRSQVK 399

Query: 121 ALEGLTYKFGSIDCLS------TCTPLNSTFP 147
           ALE L +K  S++C        +  P N +FP
Sbjct: 400 ALENLGHKLDSVNCSQPPNIAFSSLPFNHSFP 425

The following BLAST results are available for this feature:

BLAST of Cucsa.341410.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
BH087_ARATH	4.4e-34	65.52	Transcription factor bHLH87 OS=Arabidopsis thaliana GN=BHLH87 PE=2 SV=1	[more]
HEC2_ARATH	1.3e-25	53.57	Transcription factor HEC2 OS=Arabidopsis thaliana GN=HEC2 PE=1 SV=1	[more]
HEC1_ARATH	8.3e-25	46.72	Transcription factor HEC1 OS=Arabidopsis thaliana GN=HEC1 PE=1 SV=1	[more]
IND_ARATH	1.6e-23	48.62	Transcription factor IND OS=Arabidopsis thaliana GN=IND PE=1 SV=3	[more]
HEC3_ARATH	6.0e-23	47.20	Transcription factor HEC3 OS=Arabidopsis thaliana GN=HEC3 PE=1 SV=1	[more]

BLAST of Cucsa.341410.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LDH7_CUCSA	1.1e-76	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G850530 PE=4 SV=1	[more]
M5X9H7_PRUPE	5.1e-37	59.73	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015446mg PE=4 SV=1	[more]
A0A061GAT2_THECC	8.6e-37	60.40	Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 2 OS=Th...	[more]
A0A061GIV9_THECC	8.6e-37	60.40	Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 1 OS=Th...	[more]
F6HY46_VITVI	1.1e-36	57.62	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0002g02700 PE=4 SV=...	[more]

BLAST of Cucsa.341410.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G21330.1	2.5e-35	65.52	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT3G50330.1	7.2e-27	53.57	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT5G67060.1	4.7e-26	46.72	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT4G00120.1	8.8e-25	48.62	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT5G09750.1	3.4e-24	47.20	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]

BLAST of Cucsa.341410.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449458249\|ref\|XP_004146860.1\|	1.6e-76	100.00	PREDICTED: transcription factor bHLH87-like [Cucumis sativus]	[more]
gi\|659093530\|ref\|XP_008447580.1\|	5.2e-67	88.59	PREDICTED: transcription factor bHLH87-like [Cucumis melo]	[more]
gi\|645279544\|ref\|XP_008244773.1\|	2.5e-37	60.40	PREDICTED: transcription factor bHLH87 [Prunus mume]	[more]
gi\|658031773\|ref\|XP_008351374.1\|	4.3e-37	60.54	PREDICTED: transcription factor bHLH87-like [Malus domestica]	[more]
gi\|743935373\|ref\|XP_011012055.1\|	7.3e-37	59.21	PREDICTED: transcription factor bHLH87 [Populus euphratica]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR011598	bHLH_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0046983	protein dimerization activity

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsa.341410	Cucsa.341410	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsa.341410.1	Cucsa.341410.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.341410.1.CDS.1	Cucsa.341410.1.CDS.1	CDS

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	GENE3D	G3DSA:4.10.280.10		coord: 67..123 score: 1.9
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PFAM	PF00010	HLH	coord: 75..115 score: 1.
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	SMART	SM00353	finulus	coord: 72..121 score: 8.2
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROFILE	PS50888	BHLH	coord: 66..115 score: 14
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	unknown	SSF47459	HLH, helix-loop-helix DNA-binding domain	coord: 69..126 score: 4.45
None	No IPR available	PANTHER	PTHR12565	STEROL REGULATORY ELEMENT-BINDING PROTEIN	coord: 1..123 score: 3.0
None	No IPR available	PANTHER	PTHR12565:SF174	TRANSCRIPTION FACTOR BHLH87	coord: 1..123 score: 3.0