Cucsa.340800 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.340800
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Ubiquitin-like protein ATG12
Location	scaffold03356 : 3181139 .. 3183487 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AACGGGGATCCCGTAGTTCACGGCGAAGGAAAACGATGACTTCTACAGAGTCATCCAGTTCTGCTCGAAAAGGTGAGCTTTAAAGGATGTATGAACAACTCCATTTTCAATCACTGTTTATTTTGCTATGTTTGATGAATCGAACTTTCAAACTTTATTCACTTTTTAGATTTAATTGATTTTTTGATGCAGAAGAACATCTTGTTTTGTAATTGTTGTTTTATTACGGGTGCTTTCCTAATGACGTTTTCTATCAAGGTTCATCCTGATTTATTTTGGTTTCATTTCTGGCAGTGGTTGTCCTGTTGAGAGCTACTGGGGATGCTCCCATTCTCAAACAAACTAAGTTTAAGGTTTGTATTATGTCAATTTTCGTCAGTTTACAGTTTTAAAGGTTAAAAATTTGTATCATACTGTTTAAAATGTAAATTGGAAACCAATCTTGATGCTTGTGAGAATTTTTTATCATTTTATTTGATTATAAAACTGAACTATAACCGTCTGATTCTAGCAATCATGTTTGCCTATGTAGGTAAGGTTTTATGTGTGTGTTTGATGTTCTCTGAGTGAGCTAGACGGACTAGGCTAATAGGTGTAGAATACTACCGACCTAAGAGCTGAAGGAACGAAGCTTAAACTCTGTTGTTACACAAGTATTAGATCCCATGGATAAAATGCCACATCCTTATCCCGTGCAAAATTCACGTTTCCATCAAGATATCATTTTTGTTGGGTGTGCGACCAAAGTGACACATTGCACAGATAAGGGAAAAATTATGTGTATATTAGTAAGAACAACTATCTCCAATAAGTATGAGTAATTTTAGGTGAAATATAAAACGAAGTCTTGCGAGTTTATGCCCAAAGTGGATAATATCATACTATCGTGAAATATTTGGAGACACTAGAGAGTATTAAACCACCAATTCATCCAAAAGCTTAATCTAGTGGTTGAAGGCAAATTTAATTATGTATCTCTAACATAGGGTTGTTGTCCTAACAATTATCATGTGTATAATCACCAAAACTTTGTTGAAGATTTCATAAGGATTTTGGGGGCCTTGTTAGATTCTCTGTTAGTTTCTCTCAGGTTTTGTAAATTTTATACAGCAGCTCATCCATGAATTTTTATCTTTTTGGAATTTGGTTTTCTACAGTTGCAAGTTTATAGAAAAAATTCATTCACATATTTCATACATTTGACAGATGCCCGGAACAGACAAATTTATTAAAGTGATTGATTATATACGCCGGTCCATTCAACGGGACACCTTGGTATTCATCTGTCTTGTGGAATAATCTCTTTTCCATCTGCCAATTCATTTGAATTTAATGACACTTCTCTATGCTAATTGTTTATATTATTTGAAGTTTGTGTTTGTCAACAGTGCATTCTCACCGGGTCCAGATGAGACAGTTATTGATCTATATAATGTGAGTTGATATTGACTCATTTCTTCTCTTTATGTTCAAGCTGCGTTTGTACACTGTTTACAAACTTTTAGAAGAAAAAAAAGGAGGTGAGGGATGTGTGTGTGTGTTGAGGGGAGGGTGAATTGGTTGGAATCTATTTATTGGCCGGTCAAAGCCTGTCATCTAAACTTAGGGGGTATATTCATTGAAGGTATAGTGTAGACTTCTGATGTTGATGCTGGTCATGAATCATTCTTGAAAATACCCATCATTGTATATTTTTATGAGGTGAAGGGGAAAGGCTTAAGCAATCAAAATTTGAAAACTTTCTGAAAGCAGGATATCTGTAAGTTCTCTTAGATTATCACGAAACAAACTATAACATTAGATCAGATGAGTAACCTTAAATGTCTTTTTTCATCACCCCTCTCTGAGGGTAATTATTCTTGACTTCATAGCAATTCTTTAATCTGTTTCTTTACCTAGGTATACATGTATGTATTTTCATATCCACATGCATCTGAAGTTTTATCATCTTGTGGATTATTCTTTTTTGTGTGCCTATTTGCAGAACTTTGGAATTGATGGGAAGTTGGTGGTAAATTATGCCTGCTCCATGGCTTGGGGCTAATTTGCAGCATGGTAATGCTTAATGCTGAGGCTGTAAATAGTATCTTAAACAGTTCACTCTCAGTACTGTGATTTTATACTCATCCATTACGAACTATAGTGGCAGTAATCCTTTGTATTATAGACTGCTTTCCCCGACGAAAAATAAATCAGTCAAGTTCTAGAGTCATACTTGTCAAGGTCCAGAGTTTGTAAATTAATTGTTTATTTGATCGACCTCTTTAATTAATTGTTTTAACGCTGAATATGTAAACACAAGGATATATTGTTCCAAGATATGGAAGCTCAAATTCTTGATTATCCTAC

mRNA sequence

AACGGGGATCCCGTAGTTCACGGCGAAGGAAAACGATGACTTCTACAGAGTCATCCAGTTCTGCTCGAAAAGTGGTTGTCCTGTTGAGAGCTACTGGGGATGCTCCCATTCTCAAACAAACTAAGTTTAAGATGCCCGGAACAGACAAATTTATTAAAGTGATTGATTATATACGCCGGTCCATTCAACGGGACACCTTGTTTGTGTTTGTCAACAGTGCATTCTCACCGGGTCCAGATGAGACAGTTATTGATCTATATAATAACTTTGGAATTGATGGGAAGTTGGTGGTAAATTATGCCTGCTCCATGGCTTGGGGCTAATTTGCAGCATGGTAATGCTTAATGCTGAGGCTGTAAATAGTATCTTAAACAGTTCACTCTCAGTACTGTGATTTTATACTCATCCATTACGAACTATAGTGGCAGTAATCCTTTGTATTATAGACTGCTTTCCCCGACGAAAAATAAATCAGTCAAGTTCTAGAGTCATACTTGTCAAGGTCCAGAGTTTGTAAATTAATTGTTTATTTGATCGACCTCTTTAATTAATTGTTTTAACGCTGAATATGTAAACACAAGGATATATTGTTCCAAGATATGGAAGCTCAAATTCTTGATTATCCTAC

Coding sequence (CDS)

ATGACTTCTACAGAGTCATCCAGTTCTGCTCGAAAAGTGGTTGTCCTGTTGAGAGCTACTGGGGATGCTCCCATTCTCAAACAAACTAAGTTTAAGATGCCCGGAACAGACAAATTTATTAAAGTGATTGATTATATACGCCGGTCCATTCAACGGGACACCTTGTTTGTGTTTGTCAACAGTGCATTCTCACCGGGTCCAGATGAGACAGTTATTGATCTATATAATAACTTTGGAATTGATGGGAAGTTGGTGGTAAATTATGCCTGCTCCATGGCTTGGGGCTAA

Protein sequence

MTSTESSSSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG*

Homology

[Close]

BLAST of Cucsa.340800 vs. Swiss-Prot
Match: ATG12_MEDTR (Ubiquitin-like protein ATG12 OS=Medicago truncatula GN=ATG12 PE=3 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 7.9e-37
Identity = 73/95 (76.84%), Postives = 83/95 (87.37%), Query Frame = 1


Query: 1  MTSTESSSSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVN 60
          M + ES +S RKVVV LRATGDAPILKQ+KFK+ GTDKF KVID++RR + R++LFV+VN
Sbjct: 1  MAAAESPTSVRKVVVHLRATGDAPILKQSKFKIAGTDKFAKVIDFLRRQLHRESLFVYVN 60

Query: 61 SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 96
          SAFSP PDE VIDLYNNFG DGKLVVNYACSMAWG
Sbjct: 61 SAFSPNPDELVIDLYNNFGFDGKLVVNYACSMAWG 95

[Close]

BLAST of Cucsa.340800 vs. Swiss-Prot
Match: AT12A_ARATH (Ubiquitin-like protein ATG12A OS=Arabidopsis thaliana GN=ATG12A PE=1 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 1.0e-36
Identity = 73/94 (77.66%), Postives = 82/94 (87.23%), Query Frame = 1


Query: 2  TSTESSSSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVNS 61
          T + S SS RKVVV LRATG APILKQ+KFK+PGTDKF KVID++RR +  D+LFV+VNS
Sbjct: 3  TESSSPSSVRKVVVHLRATGGAPILKQSKFKIPGTDKFAKVIDFLRRQLHSDSLFVYVNS 62

Query: 62 AFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 96
          AFSP PDE+VIDLYNNFG DGKLVVNYACSMAWG
Sbjct: 63 AFSPNPDESVIDLYNNFGFDGKLVVNYACSMAWG 96

[Close]

BLAST of Cucsa.340800 vs. Swiss-Prot
Match: AT12B_ARATH (Ubiquitin-like protein ATG12B OS=Arabidopsis thaliana GN=ATG12B PE=1 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 2.2e-34
Identity = 68/93 (73.12%), Postives = 81/93 (87.10%), Query Frame = 1


Query: 3  STESSSSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVNSA 62
          +TES +S +K+VV LRATG APILKQ+KFK+ G+DKF  VID++RR +  D+LFV+VNSA
Sbjct: 2  ATESPNSVQKIVVHLRATGGAPILKQSKFKVSGSDKFANVIDFLRRQLHSDSLFVYVNSA 61

Query: 63 FSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 96
          FSP PDE+VIDLYNNFG DGKLVVNYACSMAWG
Sbjct: 62 FSPNPDESVIDLYNNFGFDGKLVVNYACSMAWG 94

[Close]

BLAST of Cucsa.340800 vs. Swiss-Prot
Match: ATG12_ORYSI (Ubiquitin-like protein ATG12 OS=Oryza sativa subsp. indica GN=ATG12 PE=3 SV=2)

HSP 1 Score: 131.3 bits (329), Expect = 5.5e-30
Identity = 59/89 (66.29%), Postives = 77/89 (86.52%), Query Frame = 1


Query: 7  SSSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVNSAFSPG 66
          ++  +KVVV  R+TG+AP LKQ+KFK+ G +KF+K+ID++RR I +DT+F++VNSAFSP 
Sbjct: 5  AAEQKKVVVHFRSTGNAPQLKQSKFKIGGNEKFLKIIDFLRRQIHQDTVFLYVNSAFSPN 64

Query: 67 PDETVIDLYNNFGIDGKLVVNYACSMAWG 96
          PDE +IDLYNNFGIDG+LVVNYA SMAWG
Sbjct: 65 PDELIIDLYNNFGIDGQLVVNYASSMAWG 93

[Close]

BLAST of Cucsa.340800 vs. Swiss-Prot
Match: ATG12_ORYSJ (Ubiquitin-like protein ATG12 OS=Oryza sativa subsp. japonica GN=ATG12 PE=3 SV=2)

HSP 1 Score: 131.3 bits (329), Expect = 5.5e-30
Identity = 59/89 (66.29%), Postives = 77/89 (86.52%), Query Frame = 1


Query: 7  SSSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVNSAFSPG 66
          ++  +KVVV  R+TG+AP LKQ+KFK+ G +KF+K+ID++RR I +DT+F++VNSAFSP 
Sbjct: 5  AAEQKKVVVHFRSTGNAPQLKQSKFKIGGNEKFLKIIDFLRRQIHQDTVFLYVNSAFSPN 64

Query: 67 PDETVIDLYNNFGIDGKLVVNYACSMAWG 96
          PDE +IDLYNNFGIDG+LVVNYA SMAWG
Sbjct: 65 PDELIIDLYNNFGIDGQLVVNYASSMAWG 93

[Close]

BLAST of Cucsa.340800 vs. TrEMBL
Match: A0A0A0LIA6_CUCSA (Ubiquitin-like protein ATG12 OS=Cucumis sativus GN=Csa_3G846020 PE=3 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 5.0e-46
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 1


Query: 1  MTSTESSSSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVN 60
          MTSTESSSSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVN
Sbjct: 1  MTSTESSSSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVN 60

Query: 61 SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 96
          SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
Sbjct: 61 SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 95

[Close]

BLAST of Cucsa.340800 vs. TrEMBL
Match: A0A061GCF0_THECC (Ubiquitin-like protein ATG12 (Fragment) OS=Theobroma cacao GN=TCM_029125 PE=3 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 6.1e-36
Identity = 75/93 (80.65%), Postives = 82/93 (88.17%), Query Frame = 1


Query: 3   STESSSSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVNSA 62
           + ES +S RKVVV LRATGDAPILKQ KFK+PGTDKF KVID++RR + RDTLFV+VNSA
Sbjct: 22  AAESPTSVRKVVVHLRATGDAPILKQAKFKIPGTDKFAKVIDFLRRQLHRDTLFVYVNSA 81

Query: 63  FSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 96
           FSP PDE VIDLYNNFG DGKLVVNYACSMAWG
Sbjct: 82  FSPNPDELVIDLYNNFGFDGKLVVNYACSMAWG 114

[Close]

BLAST of Cucsa.340800 vs. TrEMBL
Match: A0A061GBK9_THECC (Ubiquitin-like protein ATG12 OS=Theobroma cacao GN=TCM_029125 PE=3 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 6.1e-36
Identity = 75/93 (80.65%), Postives = 82/93 (88.17%), Query Frame = 1


Query: 3  STESSSSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVNSA 62
          + ES +S RKVVV LRATGDAPILKQ KFK+PGTDKF KVID++RR + RDTLFV+VNSA
Sbjct: 2  AAESPTSVRKVVVHLRATGDAPILKQAKFKIPGTDKFAKVIDFLRRQLHRDTLFVYVNSA 61

Query: 63 FSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 96
          FSP PDE VIDLYNNFG DGKLVVNYACSMAWG
Sbjct: 62 FSPNPDELVIDLYNNFGFDGKLVVNYACSMAWG 94

[Close]

BLAST of Cucsa.340800 vs. TrEMBL
Match: I3S9A1_LOTJA (Ubiquitin-like protein ATG12 OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 1.4e-35
Identity = 74/93 (79.57%), Postives = 82/93 (88.17%), Query Frame = 1


Query: 3  STESSSSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVNSA 62
          S ES SS RKVVV LRATGDAPILKQ+KFK+ GTDKF KVID++RR + RDTLFV+VNSA
Sbjct: 2  SVESPSSVRKVVVHLRATGDAPILKQSKFKIAGTDKFAKVIDFLRRQLHRDTLFVYVNSA 61

Query: 63 FSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 96
          FSP PDE +IDLYNNFG DGKL+VNYACSMAWG
Sbjct: 62 FSPNPDELIIDLYNNFGFDGKLIVNYACSMAWG 94

[Close]

BLAST of Cucsa.340800 vs. TrEMBL
Match: A0A0S3SZI2_PHAAN (Ubiquitin-like protein ATG12 OS=Vigna angularis var. angularis GN=Vigan.09G195400 PE=3 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 2.3e-35
Identity = 74/93 (79.57%), Postives = 83/93 (89.25%), Query Frame = 1


Query: 3   STESSSSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVNSA 62
           S ES SS RKVVV LRATGDAPILKQ+KFK+ GTDKF+KVID++RR + R+TLFV+VNSA
Sbjct: 71  SAESPSSVRKVVVHLRATGDAPILKQSKFKIAGTDKFVKVIDFLRRQLHRETLFVYVNSA 130

Query: 63  FSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 96
           FSP PDE VIDL+NNFG DGKLVVNYACSMAWG
Sbjct: 131 FSPNPDELVIDLFNNFGFDGKLVVNYACSMAWG 163

[Close]

BLAST of Cucsa.340800 vs. TAIR10
Match: AT1G54210.1 (AT1G54210.1 Ubiquitin-like superfamily protein)

HSP 1 Score: 153.7 bits (387), Expect = 5.8e-38
Identity = 73/94 (77.66%), Postives = 82/94 (87.23%), Query Frame = 1


Query: 2  TSTESSSSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVNS 61
          T + S SS RKVVV LRATG APILKQ+KFK+PGTDKF KVID++RR +  D+LFV+VNS
Sbjct: 3  TESSSPSSVRKVVVHLRATGGAPILKQSKFKIPGTDKFAKVIDFLRRQLHSDSLFVYVNS 62

Query: 62 AFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 96
          AFSP PDE+VIDLYNNFG DGKLVVNYACSMAWG
Sbjct: 63 AFSPNPDESVIDLYNNFGFDGKLVVNYACSMAWG 96

[Close]

BLAST of Cucsa.340800 vs. TAIR10
Match: AT3G13970.1 (AT3G13970.1 Ubiquitin-like superfamily protein)

HSP 1 Score: 146.0 bits (367), Expect = 1.2e-35
Identity = 68/93 (73.12%), Postives = 81/93 (87.10%), Query Frame = 1


Query: 3  STESSSSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVNSA 62
          +TES +S +K+VV LRATG APILKQ+KFK+ G+DKF  VID++RR +  D+LFV+VNSA
Sbjct: 2  ATESPNSVQKIVVHLRATGGAPILKQSKFKVSGSDKFANVIDFLRRQLHSDSLFVYVNSA 61

Query: 63 FSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 96
          FSP PDE+VIDLYNNFG DGKLVVNYACSMAWG
Sbjct: 62 FSPNPDESVIDLYNNFGFDGKLVVNYACSMAWG 94

[Close]

BLAST of Cucsa.340800 vs. NCBI nr
Match: gi|449466596|ref|XP_004151012.1| (PREDICTED: ubiquitin-like protein ATG12 [Cucumis sativus])

HSP 1 Score: 191.4 bits (485), Expect = 7.1e-46
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 1


Query: 1  MTSTESSSSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVN 60
          MTSTESSSSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVN
Sbjct: 1  MTSTESSSSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVN 60

Query: 61 SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 96
          SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
Sbjct: 61 SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 95

[Close]

BLAST of Cucsa.340800 vs. NCBI nr
Match: gi|659128006|ref|XP_008464001.1| (PREDICTED: ubiquitin-like protein ATG12 [Cucumis melo])

HSP 1 Score: 190.3 bits (482), Expect = 1.6e-45
Identity = 94/95 (98.95%), Postives = 95/95 (100.00%), Query Frame = 1


Query: 1  MTSTESSSSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVN 60
          MTSTESS+SARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVN
Sbjct: 1  MTSTESSTSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVN 60

Query: 61 SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 96
          SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
Sbjct: 61 SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 95

[Close]

BLAST of Cucsa.340800 vs. NCBI nr
Match: gi|470135777|ref|XP_004303685.1| (PREDICTED: ubiquitin-like protein ATG12 [Fragaria vesca subsp. vesca])

HSP 1 Score: 161.0 bits (406), Expect = 1.0e-36
Identity = 75/95 (78.95%), Postives = 86/95 (90.53%), Query Frame = 1


Query: 1  MTSTESSSSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVN 60
          M+STES ++A+KVV+ LRATGDAPILKQ KFK+PGTDKF KVID++RR + RDTLFV+VN
Sbjct: 1  MSSTESPTAAKKVVIHLRATGDAPILKQAKFKIPGTDKFAKVIDFLRRQLHRDTLFVYVN 60

Query: 61 SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 96
          SAFSP PDE V+DLYNNFG DGKLVVNYACSMAWG
Sbjct: 61 SAFSPNPDELVMDLYNNFGFDGKLVVNYACSMAWG 95

[Close]

BLAST of Cucsa.340800 vs. NCBI nr
Match: gi|1009111908|ref|XP_015865663.1| (PREDICTED: ubiquitin-like protein ATG12 [Ziziphus jujuba])

HSP 1 Score: 159.8 bits (403), Expect = 2.3e-36
Identity = 77/95 (81.05%), Postives = 85/95 (89.47%), Query Frame = 1


Query: 1  MTSTESSSSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVN 60
          M+STES SS RKVVV LRATGDAPILKQ KFK+ GTDKF KVID++RR + R+TLFV+VN
Sbjct: 1  MSSTESPSSVRKVVVHLRATGDAPILKQAKFKILGTDKFAKVIDFLRRQLHRETLFVYVN 60

Query: 61 SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 96
          SAFSP PDE+VIDLYNNFG DGKLVVNYACSMAWG
Sbjct: 61 SAFSPNPDESVIDLYNNFGFDGKLVVNYACSMAWG 95

[Close]

BLAST of Cucsa.340800 vs. NCBI nr
Match: gi|225442140|ref|XP_002275073.1| (PREDICTED: ubiquitin-like protein ATG12 [Vitis vinifera])

HSP 1 Score: 159.5 bits (402), Expect = 3.0e-36
Identity = 76/93 (81.72%), Postives = 84/93 (90.32%), Query Frame = 1


Query: 3  STESSSSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVNSA 62
          ++ES SSARKVVV LRATGDAPILKQ KFK+PGTDKF KVI+++RR + RDTLFV+VNSA
Sbjct: 2  ASESPSSARKVVVHLRATGDAPILKQAKFKIPGTDKFAKVIEFLRRQLHRDTLFVYVNSA 61

Query: 63 FSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 96
          FSP PDE VIDLYNNFG DGKLVVNYACSMAWG
Sbjct: 62 FSPNPDELVIDLYNNFGFDGKLVVNYACSMAWG 94

The following BLAST results are available for this feature:

BLAST of Cucsa.340800 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ATG12_MEDTR	7.9e-37	76.84	Ubiquitin-like protein ATG12 OS=Medicago truncatula GN=ATG12 PE=3 SV=1	[more]
AT12A_ARATH	1.0e-36	77.66	Ubiquitin-like protein ATG12A OS=Arabidopsis thaliana GN=ATG12A PE=1 SV=1	[more]
AT12B_ARATH	2.2e-34	73.12	Ubiquitin-like protein ATG12B OS=Arabidopsis thaliana GN=ATG12B PE=1 SV=1	[more]
ATG12_ORYSI	5.5e-30	66.29	Ubiquitin-like protein ATG12 OS=Oryza sativa subsp. indica GN=ATG12 PE=3 SV=2	[more]
ATG12_ORYSJ	5.5e-30	66.29	Ubiquitin-like protein ATG12 OS=Oryza sativa subsp. japonica GN=ATG12 PE=3 SV=2	[more]

BLAST of Cucsa.340800 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LIA6_CUCSA	5.0e-46	100.00	Ubiquitin-like protein ATG12 OS=Cucumis sativus GN=Csa_3G846020 PE=3 SV=1	[more]
A0A061GCF0_THECC	6.1e-36	80.65	Ubiquitin-like protein ATG12 (Fragment) OS=Theobroma cacao GN=TCM_029125 PE=3 SV...	[more]
A0A061GBK9_THECC	6.1e-36	80.65	Ubiquitin-like protein ATG12 OS=Theobroma cacao GN=TCM_029125 PE=3 SV=1	[more]
I3S9A1_LOTJA	1.4e-35	79.57	Ubiquitin-like protein ATG12 OS=Lotus japonicus PE=2 SV=1	[more]
A0A0S3SZI2_PHAAN	2.3e-35	79.57	Ubiquitin-like protein ATG12 OS=Vigna angularis var. angularis GN=Vigan.09G19540...	[more]

BLAST of Cucsa.340800 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G54210.1	5.8e-38	77.66	Ubiquitin-like superfamily protein	[more]
AT3G13970.1	1.2e-35	73.12	Ubiquitin-like superfamily protein	[more]

BLAST of Cucsa.340800 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449466596\|ref\|XP_004151012.1\|	7.1e-46	100.00	PREDICTED: ubiquitin-like protein ATG12 [Cucumis sativus]	[more]
gi\|659128006\|ref\|XP_008464001.1\|	1.6e-45	98.95	PREDICTED: ubiquitin-like protein ATG12 [Cucumis melo]	[more]
gi\|470135777\|ref\|XP_004303685.1\|	1.0e-36	78.95	PREDICTED: ubiquitin-like protein ATG12 [Fragaria vesca subsp. vesca]	[more]
gi\|1009111908\|ref\|XP_015865663.1\|	2.3e-36	81.05	PREDICTED: ubiquitin-like protein ATG12 [Ziziphus jujuba]	[more]
gi\|225442140\|ref\|XP_002275073.1\|	3.0e-36	81.72	PREDICTED: ubiquitin-like protein ATG12 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007242	Atg12

Vocabulary: **Biological Process**
Term	Definition
GO:0000045	autophagosome assembly

Vocabulary: **Cellular Component**
Term	Definition
GO:0005737	cytoplasm

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000045	autophagosome assembly
biological_process	GO:0015031	protein transport
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.340800.1	Cucsa.340800.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007242	Ubiquitin-like protein Atg12	PANTHER	PTHR13385	AUTOPHAGY PROTEIN 12	coord: 1..95 score: 1.3
IPR007242	Ubiquitin-like protein Atg12	PFAM	PF04110	APG12	coord: 12..95 score: 7.8
None	No IPR available	GENE3D	G3DSA:3.10.20.90		coord: 16..95 score: 9.5
None	No IPR available	PANTHER	PTHR13385:SF0	UBIQUITIN-LIKE PROTEIN ATG12	coord: 1..95 score: 1.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.340800	Csa3G846020	Cucumber (Chinese Long) v2	cgycuB478
Cucsa.340800	MELO3C025809	Melon (DHL92) v3.5.1	cgymeB560
Cucsa.340800	ClCG07G014030	Watermelon (Charleston Gray)	cgywcgB589
Cucsa.340800	CSPI03G41050	Wild cucumber (PI 183967)	cgycpiB504
Cucsa.340800	CmaCh14G012370	Cucurbita maxima (Rimu)	cgycmaB0927
Cucsa.340800	CmoCh14G012680	Cucurbita moschata (Rifu)	cgycmoB0927
Cucsa.340800	Cp4.1LG03g14630	Cucurbita pepo (Zucchini)	cgycpeB0889
Cucsa.340800	MELO3C025809.2	Melon (DHL92) v3.6.1	cgymedB561
Cucsa.340800	CsaV3_3G043520	Cucumber (Chinese Long) v3	cgycucB523
Cucsa.340800	Cla97C07G140800	Watermelon (97103) v2	cgywmbB589
Cucsa.340800	Carg06415	Silver-seed gourd	carcgyB0144
Cucsa.340800	Carg04327	Silver-seed gourd	carcgyB0246

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.340800	Wax gourd	cgywgoB682
Cucsa.340800	Cucurbita maxima (Rimu)	cgycmaB0935
Cucsa.340800	Cucurbita moschata (Rifu)	cgycmoB0935
Cucsa.340800	Watermelon (97103) v1	cgywmB611
Cucsa.340800	Cucurbita pepo (Zucchini)	cgycpeB0886
Cucsa.340800	Bottle gourd (USVL1VR-Ls)	cgylsiB556