Cp4.1LG03g14630 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG03g14630
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUbiquitin-like protein ATG12
LocationCp4.1LG03 : 8522829 .. 8525089 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGAACCGTACAAAATCGCCCAATCAAGATCTTTCGTTCTTTTCATCGAAGTCGGAGACCGTACCCCACACAGAGGGGTGGCAATTCGTGCAGTCCACGGCGGAGGAAAACGATGGCTTCTATGGAGTCGTCTAGTTCTGCTAAAAAAGGTGAGCTTTAGAGGATGTATGAACAAACCTATTTTCAATCAGGGTTTATTCTGCTATTTTTGATGAATCGAACTTCCAAACTTTATTCAATCTTCAGGCTTAGTTGATCGGATACAGAAGGGGAGTTCTTTTACAATTACCGTTTAATACGATTCTTTCCTAATGAGGTTTTCAATCAAAATCTATGGTGATTTATTTGGTTTTATTTTTGGTAGTGGTTGTTCTGCTGCGATCTATTGGGGATGCTCCCATTCTCAAACAAAACAAGTTTAAGGTTTGTATTACCTTAATTTTTGTCTTTATATGGATTTAGAAGTTGTAATTTGTGTTGTACTGTTTAAAATGTAAAATGGAAATCAAATCTTGATGCATGTGAAAACTTTTGGTAATTCGATTAGATCAAGATGAACTGAACTGTAAACGATTGATTCTAGTATCGTGTGTGCTGACTGAGTGAGACATAGATGAAGAAAACGACCATTTTAGGAGCTAAAAGGAATGAAGCTTAATCCTTGTACTTATGGTTTTCATGTGGCTAATAGCAGAAACTTTATTGTTTATGACAAATTGTGGAAATTTTCATAGAATAATTGATGAATTAAGTATCATGATTAATTTGGGGAGGGTATATCCCTGCTATGCGGTGAGGGTTCTTAGAATGTGTGGTTTTGAAAAAATTTATCCAGCGGCTCCTCCTTTNTTTTTTTTTTTTTTTCCTATATTTGTTAGTTTATGGCAAATGTTCATTCACATATTGAATACATTTGACAGATGCCTGGAACAGACAAATTTATTAAAGTGATTGATTATATACGTCGGTCAATCCAACGGGACACCTTGGTATTCATCTGACTTCTGAAATACTCTCTCTTTCATCTGCTCATTCTTAAGAAATTAATGACACTTCACCATGCTAATTGTTTCTATTCTTTGAAGTTTGTGTTTGTCAACAGTGCATTCTCACCTGGTCCAGATGAGACAGTTATTGATCTATATAATGTGAGTTGATATTGACTCATTTCTTCCATTTATGTTCAAGATGCGTTTGTATACTGTTTGAAATTTTCATTAACTTTTAGAATCAGAAAAGGAGGGGGGATTTTTTTAGAAGAATTGGTTGGAATTTATCTTAAAAAGATTCCATCTATTGGCTAGTCAAAAACTGCCATCTTAACTGAGGGGGTATCTTCATTGAAGGTGTAGTGTAGACTTCTGATGTTGATGTTGGTCATGAACCATTCTTGAAAATACCCATCATTATATATTCTAAGGAGGTGAGGAAAAGGCTTAAGCAGTCAAGATTTGAAACCTTTCTGAAGCATGAATCCACAAGATCTCTTAGATTATCACCTTCTCTGAGGGCTATGTATGGATAAAATTATTCCCTGTTCATAGCAATTTCTCAATCTGTTTCTTTACCTAAGAATAAATATATGTTTTTTTTCATATCCACACGAGTTTAAAGTTTTTCTTAAGCAATCGTGTCTAGAGGTATCTTGTTCATGATCTTTTTTGTGTGTTTATTTGCAGAACTTTGGAATTGATGGGAAGTTGGTCGTAAATTATGCCTGCTCGATGGCTTGGGGATAACTTGCAGTGTGGTAATGTTTAGTGCTGAGGCTGTAAATAGTCTATTGAACTGTTCATTCTAAGTACTGTGATTATAAGCTCATCCATTTCTTTTGTAAGAACCATAGTAGTAGATTTTCTTCCATATTTTAGGCTTATAATCAAGTCAAGTTCTAGAGTCATACTTGTCAAGGACCAGAGTCTGTAATTATTTATTTGATCGACCTTGTTAATCAATTGTTTTAACATTGAATATGCAAGCCAAAGGATTTTTTTTTTTTTTCTTTTACTCATAACTGTTATTAACATACAAGTGGTCATTGCTATCCAAGTGTCATATTTTGTTCTGATGAAAGAGATCAGTTCTTGTGTGTCAGTTTAAGATGACATTACTTCGTGTTTACCCTTCATAACTAGTCTGGTAATCCTCGTTTAACATACCTGGGGATATACAAGTTATCTTTCTGTTCTTTTTTCTCCATGACAAGAGTTAGCTGGGAACATATAACTCTAATAGTAAGCTTCAAAGGGGCCAATTTGATGG

mRNA sequence

TGAACCGTACAAAATCGCCCAATCAAGATCTTTCGTTCTTTTCATCGAAGTCGGAGACCGTACCCCACACAGAGGGGTGGCAATTCGTGCAGTCCACGGCGGAGGAAAACGATGGCTTCTATGGAGTCGTCTAGTTCTGCTAAAAAAGTGGTTGTTCTGCTGCGATCTATTGGGGATGCTCCCATTCTCAAACAAAACAAGTTTAAGATGCCTGGAACAGACAAATTTATTAAAGTGATTGATTATATACGTCGGTCAATCCAACGGGACACCTTGTTTGTGTTTGTCAACAGTGCATTCTCACCTGGTCCAGATGAGACAGTTATTGATCTATATAATAACTTTGGAATTGATGGGAAGTTGGTCGTAAATTATGCCTGCTCGATGGCTTGGGGATAACTTGCAGTGTGGTAATGTTTAGTGCTGAGGCTGTAAATAGTCTATTGAACTGTTCATTCTAAGTACTGTGATTATAAGCTCATCCATTTCTTTTGTAAGAACCATAGTAGTAGATTTTCTTCCATATTTTAGGCTTATAATCAAGTCAAGTTCTAGAGTCATACTTGTCAAGGACCAGAGTCTGTAATTATTTATTTGATCGACCTTGTTAATCAATTGTTTTAACATTGAATATGCAAGCCAAAGGATTTTTTTTTTTTTTCTTTTACTCATAACTGTTATTAACATACAAGTGGTCATTGCTATCCAAGTGTCATATTTTGTTCTGATGAAAGAGATCAGTTCTTGTGTGTCAGTTTAAGATGACATTACTTCGTGTTTACCCTTCATAACTAGTCTGGTAATCCTCGTTTAACATACCTGGGGATATACAAGTTATCTTTCTGTTCTTTTTTCTCCATGACAAGAGTTAGCTGGGAACATATAACTCTAATAGTAAGCTTCAAAGGGGCCAATTTGATGG

Coding sequence (CDS)

ATGGCTTCTATGGAGTCGTCTAGTTCTGCTAAAAAAGTGGTTGTTCTGCTGCGATCTATTGGGGATGCTCCCATTCTCAAACAAAACAAGTTTAAGATGCCTGGAACAGACAAATTTATTAAAGTGATTGATTATATACGTCGGTCAATCCAACGGGACACCTTGTTTGTGTTTGTCAACAGTGCATTCTCACCTGGTCCAGATGAGACAGTTATTGATCTATATAATAACTTTGGAATTGATGGGAAGTTGGTCGTAAATTATGCCTGCTCGATGGCTTGGGGATAA

Protein sequence

MASMESSSSAKKVVVLLRSIGDAPILKQNKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
Homology
[Close]
BLAST of Cp4.1LG03g14630 vs. Swiss-Prot
Match: ATG12_MEDTR (Ubiquitin-like protein ATG12 OS=Medicago truncatula GN=ATG12 PE=3 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 8.7e-36
Identity = 71/95 (74.74%), Postives = 83/95 (87.37%), Query Frame = 1 

Query: 1  MASMESSSSAKKVVVLLRSIGDAPILKQNKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVN 60
          MA+ ES +S +KVVV LR+ GDAPILKQ+KFK+ GTDKF KVID++RR + R++LFV+VN
Sbjct: 1  MAAAESPTSVRKVVVHLRATGDAPILKQSKFKIAGTDKFAKVIDFLRRQLHRESLFVYVN 60

Query: 61 SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 96
          SAFSP PDE VIDLYNNFG DGKLVVNYACSMAWG
Sbjct: 61 SAFSPNPDELVIDLYNNFGFDGKLVVNYACSMAWG 95

[Close]
BLAST of Cp4.1LG03g14630 vs. Swiss-Prot
Match: AT12A_ARATH (Ubiquitin-like protein ATG12A OS=Arabidopsis thaliana GN=ATG12A PE=1 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 9.6e-35
Identity = 72/96 (75.00%), Postives = 83/96 (86.46%), Query Frame = 1 

Query: 1  MASMESS-SSAKKVVVLLRSIGDAPILKQNKFKMPGTDKFIKVIDYIRRSIQRDTLFVFV 60
          MA+  SS SS +KVVV LR+ G APILKQ+KFK+PGTDKF KVID++RR +  D+LFV+V
Sbjct: 1  MATESSSPSSVRKVVVHLRATGGAPILKQSKFKIPGTDKFAKVIDFLRRQLHSDSLFVYV 60

Query: 61 NSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 96
          NSAFSP PDE+VIDLYNNFG DGKLVVNYACSMAWG
Sbjct: 61 NSAFSPNPDESVIDLYNNFGFDGKLVVNYACSMAWG 96

[Close]
BLAST of Cp4.1LG03g14630 vs. Swiss-Prot
Match: AT12B_ARATH (Ubiquitin-like protein ATG12B OS=Arabidopsis thaliana GN=ATG12B PE=1 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 9.0e-33
Identity = 65/91 (71.43%), Postives = 78/91 (85.71%), Query Frame = 1 

Query: 5  ESSSSAKKVVVLLRSIGDAPILKQNKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVNSAFS 64
          ES +S +K+VV LR+ G APILKQ+KFK+ G+DKF  VID++RR +  D+LFV+VNSAFS
Sbjct: 4  ESPNSVQKIVVHLRATGGAPILKQSKFKVSGSDKFANVIDFLRRQLHSDSLFVYVNSAFS 63

Query: 65 PGPDETVIDLYNNFGIDGKLVVNYACSMAWG 96
          P PDE+VIDLYNNFG DGKLVVNYACSMAWG
Sbjct: 64 PNPDESVIDLYNNFGFDGKLVVNYACSMAWG 94

[Close]
BLAST of Cp4.1LG03g14630 vs. Swiss-Prot
Match: ATG12_ORYSI (Ubiquitin-like protein ATG12 OS=Oryza sativa subsp. indica GN=ATG12 PE=3 SV=2)

HSP 1 Score: 132.1 bits (331), Expect = 3.2e-30
Identity = 60/89 (67.42%), Postives = 76/89 (85.39%), Query Frame = 1 

Query: 7  SSSAKKVVVLLRSIGDAPILKQNKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVNSAFSPG 66
          ++  KKVVV  RS G+AP LKQ+KFK+ G +KF+K+ID++RR I +DT+F++VNSAFSP 
Sbjct: 5  AAEQKKVVVHFRSTGNAPQLKQSKFKIGGNEKFLKIIDFLRRQIHQDTVFLYVNSAFSPN 64

Query: 67 PDETVIDLYNNFGIDGKLVVNYACSMAWG 96
          PDE +IDLYNNFGIDG+LVVNYA SMAWG
Sbjct: 65 PDELIIDLYNNFGIDGQLVVNYASSMAWG 93

[Close]
BLAST of Cp4.1LG03g14630 vs. Swiss-Prot
Match: ATG12_ORYSJ (Ubiquitin-like protein ATG12 OS=Oryza sativa subsp. japonica GN=ATG12 PE=3 SV=2)

HSP 1 Score: 132.1 bits (331), Expect = 3.2e-30
Identity = 60/89 (67.42%), Postives = 76/89 (85.39%), Query Frame = 1 

Query: 7  SSSAKKVVVLLRSIGDAPILKQNKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVNSAFSPG 66
          ++  KKVVV  RS G+AP LKQ+KFK+ G +KF+K+ID++RR I +DT+F++VNSAFSP 
Sbjct: 5  AAEQKKVVVHFRSTGNAPQLKQSKFKIGGNEKFLKIIDFLRRQIHQDTVFLYVNSAFSPN 64

Query: 67 PDETVIDLYNNFGIDGKLVVNYACSMAWG 96
          PDE +IDLYNNFGIDG+LVVNYA SMAWG
Sbjct: 65 PDELIIDLYNNFGIDGQLVVNYASSMAWG 93

[Close]
BLAST of Cp4.1LG03g14630 vs. TrEMBL
Match: A0A0A0LIA6_CUCSA (Ubiquitin-like protein ATG12 OS=Cucumis sativus GN=Csa_3G846020 PE=3 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 8.7e-43
Identity = 89/95 (93.68%), Postives = 91/95 (95.79%), Query Frame = 1 

Query: 1  MASMESSSSAKKVVVLLRSIGDAPILKQNKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVN 60
          M S ESSSSA+KVVVLLR+ GDAPILKQ KFKMPGTDKFIKVIDYIRRSIQRDTLFVFVN
Sbjct: 1  MTSTESSSSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVN 60

Query: 61 SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 96
          SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
Sbjct: 61 SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 95

[Close]
BLAST of Cp4.1LG03g14630 vs. TrEMBL
Match: I3S9A1_LOTJA (Ubiquitin-like protein ATG12 OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 1.9e-34
Identity = 71/93 (76.34%), Postives = 82/93 (88.17%), Query Frame = 1 

Query: 3  SMESSSSAKKVVVLLRSIGDAPILKQNKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVNSA 62
          S+ES SS +KVVV LR+ GDAPILKQ+KFK+ GTDKF KVID++RR + RDTLFV+VNSA
Sbjct: 2  SVESPSSVRKVVVHLRATGDAPILKQSKFKIAGTDKFAKVIDFLRRQLHRDTLFVYVNSA 61

Query: 63 FSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 96
          FSP PDE +IDLYNNFG DGKL+VNYACSMAWG
Sbjct: 62 FSPNPDELIIDLYNNFGFDGKLIVNYACSMAWG 94

[Close]
BLAST of Cp4.1LG03g14630 vs. TrEMBL
Match: A0A061GBK9_THECC (Ubiquitin-like protein ATG12 OS=Theobroma cacao GN=TCM_029125 PE=3 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 2.5e-34
Identity = 72/91 (79.12%), Postives = 80/91 (87.91%), Query Frame = 1 

Query: 5  ESSSSAKKVVVLLRSIGDAPILKQNKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVNSAFS 64
          ES +S +KVVV LR+ GDAPILKQ KFK+PGTDKF KVID++RR + RDTLFV+VNSAFS
Sbjct: 4  ESPTSVRKVVVHLRATGDAPILKQAKFKIPGTDKFAKVIDFLRRQLHRDTLFVYVNSAFS 63

Query: 65 PGPDETVIDLYNNFGIDGKLVVNYACSMAWG 96
          P PDE VIDLYNNFG DGKLVVNYACSMAWG
Sbjct: 64 PNPDELVIDLYNNFGFDGKLVVNYACSMAWG 94

[Close]
BLAST of Cp4.1LG03g14630 vs. TrEMBL
Match: A0A061GCF0_THECC (Ubiquitin-like protein ATG12 (Fragment) OS=Theobroma cacao GN=TCM_029125 PE=3 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 2.5e-34
Identity = 72/91 (79.12%), Postives = 80/91 (87.91%), Query Frame = 1 

Query: 5   ESSSSAKKVVVLLRSIGDAPILKQNKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVNSAFS 64
           ES +S +KVVV LR+ GDAPILKQ KFK+PGTDKF KVID++RR + RDTLFV+VNSAFS
Sbjct: 24  ESPTSVRKVVVHLRATGDAPILKQAKFKIPGTDKFAKVIDFLRRQLHRDTLFVYVNSAFS 83

Query: 65  PGPDETVIDLYNNFGIDGKLVVNYACSMAWG 96
           P PDE VIDLYNNFG DGKLVVNYACSMAWG
Sbjct: 84  PNPDELVIDLYNNFGFDGKLVVNYACSMAWG 114

[Close]
BLAST of Cp4.1LG03g14630 vs. TrEMBL
Match: A0A0S3SZI2_PHAAN (Ubiquitin-like protein ATG12 OS=Vigna angularis var. angularis GN=Vigan.09G195400 PE=3 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 5.7e-34
Identity = 71/93 (76.34%), Postives = 82/93 (88.17%), Query Frame = 1 

Query: 3   SMESSSSAKKVVVLLRSIGDAPILKQNKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVNSA 62
           S ES SS +KVVV LR+ GDAPILKQ+KFK+ GTDKF+KVID++RR + R+TLFV+VNSA
Sbjct: 71  SAESPSSVRKVVVHLRATGDAPILKQSKFKIAGTDKFVKVIDFLRRQLHRETLFVYVNSA 130

Query: 63  FSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 96
           FSP PDE VIDL+NNFG DGKLVVNYACSMAWG
Sbjct: 131 FSPNPDELVIDLFNNFGFDGKLVVNYACSMAWG 163

[Close]
BLAST of Cp4.1LG03g14630 vs. TAIR10
Match: AT1G54210.1 (AT1G54210.1 Ubiquitin-like superfamily protein)

HSP 1 Score: 147.1 bits (370), Expect = 5.4e-36
Identity = 72/96 (75.00%), Postives = 83/96 (86.46%), Query Frame = 1 

Query: 1  MASMESS-SSAKKVVVLLRSIGDAPILKQNKFKMPGTDKFIKVIDYIRRSIQRDTLFVFV 60
          MA+  SS SS +KVVV LR+ G APILKQ+KFK+PGTDKF KVID++RR +  D+LFV+V
Sbjct: 1  MATESSSPSSVRKVVVHLRATGGAPILKQSKFKIPGTDKFAKVIDFLRRQLHSDSLFVYV 60

Query: 61 NSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 96
          NSAFSP PDE+VIDLYNNFG DGKLVVNYACSMAWG
Sbjct: 61 NSAFSPNPDESVIDLYNNFGFDGKLVVNYACSMAWG 96

[Close]
BLAST of Cp4.1LG03g14630 vs. TAIR10
Match: AT3G13970.1 (AT3G13970.1 Ubiquitin-like superfamily protein)

HSP 1 Score: 140.6 bits (353), Expect = 5.1e-34
Identity = 65/91 (71.43%), Postives = 78/91 (85.71%), Query Frame = 1 

Query: 5  ESSSSAKKVVVLLRSIGDAPILKQNKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVNSAFS 64
          ES +S +K+VV LR+ G APILKQ+KFK+ G+DKF  VID++RR +  D+LFV+VNSAFS
Sbjct: 4  ESPNSVQKIVVHLRATGGAPILKQSKFKVSGSDKFANVIDFLRRQLHSDSLFVYVNSAFS 63

Query: 65 PGPDETVIDLYNNFGIDGKLVVNYACSMAWG 96
          P PDE+VIDLYNNFG DGKLVVNYACSMAWG
Sbjct: 64 PNPDESVIDLYNNFGFDGKLVVNYACSMAWG 94

[Close]
BLAST of Cp4.1LG03g14630 vs. NCBI nr
Match: gi|449466596|ref|XP_004151012.1| (PREDICTED: ubiquitin-like protein ATG12 [Cucumis sativus])

HSP 1 Score: 180.6 bits (457), Expect = 1.2e-42
Identity = 89/95 (93.68%), Postives = 91/95 (95.79%), Query Frame = 1 

Query: 1  MASMESSSSAKKVVVLLRSIGDAPILKQNKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVN 60
          M S ESSSSA+KVVVLLR+ GDAPILKQ KFKMPGTDKFIKVIDYIRRSIQRDTLFVFVN
Sbjct: 1  MTSTESSSSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVN 60

Query: 61 SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 96
          SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
Sbjct: 61 SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 95

[Close]
BLAST of Cp4.1LG03g14630 vs. NCBI nr
Match: gi|659128006|ref|XP_008464001.1| (PREDICTED: ubiquitin-like protein ATG12 [Cucumis melo])

HSP 1 Score: 179.5 bits (454), Expect = 2.8e-42
Identity = 88/95 (92.63%), Postives = 91/95 (95.79%), Query Frame = 1 

Query: 1  MASMESSSSAKKVVVLLRSIGDAPILKQNKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVN 60
          M S ESS+SA+KVVVLLR+ GDAPILKQ KFKMPGTDKFIKVIDYIRRSIQRDTLFVFVN
Sbjct: 1  MTSTESSTSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVN 60

Query: 61 SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 96
          SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
Sbjct: 61 SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 95

[Close]
BLAST of Cp4.1LG03g14630 vs. NCBI nr
Match: gi|470135777|ref|XP_004303685.1| (PREDICTED: ubiquitin-like protein ATG12 [Fragaria vesca subsp. vesca])

HSP 1 Score: 155.6 bits (392), Expect = 4.3e-35
Identity = 73/95 (76.84%), Postives = 84/95 (88.42%), Query Frame = 1 

Query: 1  MASMESSSSAKKVVVLLRSIGDAPILKQNKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVN 60
          M+S ES ++AKKVV+ LR+ GDAPILKQ KFK+PGTDKF KVID++RR + RDTLFV+VN
Sbjct: 1  MSSTESPTAAKKVVIHLRATGDAPILKQAKFKIPGTDKFAKVIDFLRRQLHRDTLFVYVN 60

Query: 61 SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 96
          SAFSP PDE V+DLYNNFG DGKLVVNYACSMAWG
Sbjct: 61 SAFSPNPDELVMDLYNNFGFDGKLVVNYACSMAWG 95

[Close]
BLAST of Cp4.1LG03g14630 vs. NCBI nr
Match: gi|225442140|ref|XP_002275073.1| (PREDICTED: ubiquitin-like protein ATG12 [Vitis vinifera])

HSP 1 Score: 153.7 bits (387), Expect = 1.6e-34
Identity = 76/95 (80.00%), Postives = 84/95 (88.42%), Query Frame = 1 

Query: 1  MASMESSSSAKKVVVLLRSIGDAPILKQNKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVN 60
          MAS ES SSA+KVVV LR+ GDAPILKQ KFK+PGTDKF KVI+++RR + RDTLFV+VN
Sbjct: 1  MAS-ESPSSARKVVVHLRATGDAPILKQAKFKIPGTDKFAKVIEFLRRQLHRDTLFVYVN 60

Query: 61 SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 96
          SAFSP PDE VIDLYNNFG DGKLVVNYACSMAWG
Sbjct: 61 SAFSPNPDELVIDLYNNFGFDGKLVVNYACSMAWG 94

[Close]
BLAST of Cp4.1LG03g14630 vs. NCBI nr
Match: gi|388497554|gb|AFK36843.1| (unknown [Lotus japonicus])

HSP 1 Score: 152.9 bits (385), Expect = 2.8e-34
Identity = 71/93 (76.34%), Postives = 82/93 (88.17%), Query Frame = 1 

Query: 3  SMESSSSAKKVVVLLRSIGDAPILKQNKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVNSA 62
          S+ES SS +KVVV LR+ GDAPILKQ+KFK+ GTDKF KVID++RR + RDTLFV+VNSA
Sbjct: 2  SVESPSSVRKVVVHLRATGDAPILKQSKFKIAGTDKFAKVIDFLRRQLHRDTLFVYVNSA 61

Query: 63 FSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 96
          FSP PDE +IDLYNNFG DGKL+VNYACSMAWG
Sbjct: 62 FSPNPDELIIDLYNNFGFDGKLIVNYACSMAWG 94

The following BLAST results are available for this feature:
BLAST of Cp4.1LG03g14630 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ATG12_MEDTR8.7e-3674.74Ubiquitin-like protein ATG12 OS=Medicago truncatula GN=ATG12 PE=3 SV=1[more]
AT12A_ARATH9.6e-3575.00Ubiquitin-like protein ATG12A OS=Arabidopsis thaliana GN=ATG12A PE=1 SV=1[more]
AT12B_ARATH9.0e-3371.43Ubiquitin-like protein ATG12B OS=Arabidopsis thaliana GN=ATG12B PE=1 SV=1[more]
ATG12_ORYSI3.2e-3067.42Ubiquitin-like protein ATG12 OS=Oryza sativa subsp. indica GN=ATG12 PE=3 SV=2[more]
ATG12_ORYSJ3.2e-3067.42Ubiquitin-like protein ATG12 OS=Oryza sativa subsp. japonica GN=ATG12 PE=3 SV=2[more]
BLAST of Cp4.1LG03g14630 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LIA6_CUCSA8.7e-4393.68Ubiquitin-like protein ATG12 OS=Cucumis sativus GN=Csa_3G846020 PE=3 SV=1[more]
I3S9A1_LOTJA1.9e-3476.34Ubiquitin-like protein ATG12 OS=Lotus japonicus PE=2 SV=1[more]
A0A061GBK9_THECC2.5e-3479.12Ubiquitin-like protein ATG12 OS=Theobroma cacao GN=TCM_029125 PE=3 SV=1[more]
A0A061GCF0_THECC2.5e-3479.12Ubiquitin-like protein ATG12 (Fragment) OS=Theobroma cacao GN=TCM_029125 PE=3 SV... [more]
A0A0S3SZI2_PHAAN5.7e-3476.34Ubiquitin-like protein ATG12 OS=Vigna angularis var. angularis GN=Vigan.09G19540... [more]
BLAST of Cp4.1LG03g14630 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G54210.15.4e-3675.00 Ubiquitin-like superfamily protein[more]
AT3G13970.15.1e-3471.43 Ubiquitin-like superfamily protein[more]
BLAST of Cp4.1LG03g14630 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449466596|ref|XP_004151012.1|1.2e-4293.68PREDICTED: ubiquitin-like protein ATG12 [Cucumis sativus][more]
gi|659128006|ref|XP_008464001.1|2.8e-4292.63PREDICTED: ubiquitin-like protein ATG12 [Cucumis melo][more]
gi|470135777|ref|XP_004303685.1|4.3e-3576.84PREDICTED: ubiquitin-like protein ATG12 [Fragaria vesca subsp. vesca][more]
gi|225442140|ref|XP_002275073.1|1.6e-3480.00PREDICTED: ubiquitin-like protein ATG12 [Vitis vinifera][more]
gi|388497554|gb|AFK36843.1|2.8e-3476.34unknown [Lotus japonicus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Vocabulary: Biological Process
TermDefinition
GO:0000045autophagosome assembly
Vocabulary: INTERPRO
TermDefinition
IPR007242Atg12
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000045 autophagosome assembly
biological_process GO:0015031 protein transport
cellular_component GO:0005737 cytoplasm
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG03g14630.1Cp4.1LG03g14630.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007242Ubiquitin-like protein Atg12PANTHERPTHR13385AUTOPHAGY PROTEIN 12coord: 1..95
score: 3.8
IPR007242Ubiquitin-like protein Atg12PFAMPF04110APG12coord: 12..95
score: 1.3
NoneNo IPR availableGENE3DG3DSA:3.10.20.90coord: 17..95
score: 2.0
NoneNo IPR availablePANTHERPTHR13385:SF0UBIQUITIN-LIKE PROTEIN ATG12coord: 1..95
score: 3.8

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG03g14630Cucsa.340800Cucumber (Gy14) v1cgycpeB0889
Cp4.1LG03g14630CmaCh14G012370Cucurbita maxima (Rimu)cmacpeB283
Cp4.1LG03g14630CmoCh14G012680Cucurbita moschata (Rifu)cmocpeB245
Cp4.1LG03g14630Csa3G846020Cucumber (Chinese Long) v2cpecuB602
Cp4.1LG03g14630MELO3C025809Melon (DHL92) v3.5.1cpemeB575
Cp4.1LG03g14630ClCG07G014030Watermelon (Charleston Gray)cpewcgB571
Cp4.1LG03g14630CSPI03G41050Wild cucumber (PI 183967)cpecpiB604
Cp4.1LG03g14630MELO3C025809.2Melon (DHL92) v3.6.1cpemedB682
Cp4.1LG03g14630CsaV3_3G043520Cucumber (Chinese Long) v3cpecucB0751
Cp4.1LG03g14630CsGy3G038550Cucumber (Gy14) v2cgybcpeB399
Cp4.1LG03g14630Carg06415Silver-seed gourdcarcpeB0176
Cp4.1LG03g14630Carg04327Silver-seed gourdcarcpeB0287
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG03g14630Cucurbita pepo (Zucchini)cpecpeB128
Cp4.1LG03g14630Cucurbita pepo (Zucchini)cpecpeB182
Cp4.1LG03g14630Cucurbita pepo (Zucchini)cpecpeB334
Cp4.1LG03g14630Cucurbita pepo (Zucchini)cpecpeB451
Cp4.1LG03g14630Cucurbita pepo (Zucchini)cpecpeB481
Cp4.1LG03g14630Cucumber (Gy14) v1cgycpeB0942
Cp4.1LG03g14630Cucurbita maxima (Rimu)cmacpeB400
Cp4.1LG03g14630Cucurbita maxima (Rimu)cmacpeB493
Cp4.1LG03g14630Cucurbita maxima (Rimu)cmacpeB929
Cp4.1LG03g14630Cucurbita moschata (Rifu)cmocpeB362
Cp4.1LG03g14630Cucurbita moschata (Rifu)cmocpeB452
Cp4.1LG03g14630Cucurbita moschata (Rifu)cmocpeB863
Cp4.1LG03g14630Wild cucumber (PI 183967)cpecpiB636
Cp4.1LG03g14630Cucumber (Chinese Long) v2cpecuB632
Cp4.1LG03g14630Bottle gourd (USVL1VR-Ls)cpelsiB493
Cp4.1LG03g14630Bottle gourd (USVL1VR-Ls)cpelsiB516
Cp4.1LG03g14630Watermelon (Charleston Gray)cpewcgB542
Cp4.1LG03g14630Watermelon (97103) v1cpewmB593
Cp4.1LG03g14630Watermelon (97103) v1cpewmB600
Cp4.1LG03g14630Melon (DHL92) v3.5.1cpemeB558
Cp4.1LG03g14630Cucumber (Gy14) v2cgybcpeB230
Cp4.1LG03g14630Cucumber (Gy14) v2cgybcpeB958
Cp4.1LG03g14630Melon (DHL92) v3.6.1cpemedB664
Cp4.1LG03g14630Melon (DHL92) v3.6.1cpemedB688
Cp4.1LG03g14630Silver-seed gourdcarcpeB1430
Cp4.1LG03g14630Cucumber (Chinese Long) v3cpecucB0744
Cp4.1LG03g14630Cucumber (Chinese Long) v3cpecucB0790
Cp4.1LG03g14630Wax gourdcpewgoB0817
Cp4.1LG03g14630Wax gourdcpewgoB0785