Cucsa.326040 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.326040
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionUnknown protein
Locationscaffold03132 : 306562 .. 307199 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CATCTCCCTAATTTTTCCTCCTCCATCTCTTCTAACTTTTCATTTTGTTTCCTTTCTTCAATGGCAAACCTCTTCAAAAAACTCCCACTTTTCTTCTTTCTTTTTACCCTCATTCTTCTCATCTCCGTTTCTTCTTCTTCAGCCAGATTGCTGCGCCAACAATCTCTTTCCCCCGCCCTTAAACTTGATATTCCGGCCGATCCCGCCGCACCCACAATGACCGAATATGAGTCTCTGCTTCTTGGGTTTCTTCCAAAGGGAGGATCAATCCCGCCGTCCGGACCCAGCAAAGGCACCAACAACTTCAACACTTAAGAATTCTTTTCTTGGGTTTTTCTTTTCTAATTTTTAAATCTATGTGTTTCGTTTAGGGTAAATATTGGTTCAAAAGTGATGTAGACTTAAGAGGAGAGGAGAGGTCAGAGATATTTCATTCATTATTTCATTATTATGCAATTATTTGTACTATTAATTCATTAACTGATGTATACTGATTAACTTTTCTTTTGTTAATCATTGGATTTTTGTGTGTCTTGACGCCAAAACTCTGCCTCCATGACAAGCTTAATTTCTCATGGAAGTTTGAGAAAATATTGTGTAAATTTAATGAAAAGATTCATTTAATGTAGAAAATGTAT

mRNA sequence

CATCTCCCTAATTTTTCCTCCTCCATCTCTTCTAACTTTTCATTTTGTTTCCTTTCTTCAATGGCAAACCTCTTCAAAAAACTCCCACTTTTCTTCTTTCTTTTTACCCTCATTCTTCTCATCTCCGTTTCTTCTTCTTCAGCCAGATTGCTGCGCCAACAATCTCTTTCCCCCGCCCTTAAACTTGATATTCCGGCCGATCCCGCCGCACCCACAATGACCGAATATGAGTCTCTGCTTCTTGGGTTTCTTCCAAAGGGAGGATCAATCCCGCCGTCCGGACCCAGCAAAGGCACCAACAACTTCAACACTTAAGAATTCTTTTCTTGGGTTTTTCTTTTCTAATTTTTAAATCTATGTGTTTCGTTTAGGGTAAATATTGGTTCAAAAGTGATGTAGACTTAAGAGGAGAGGAGAGGTCAGAGATATTTCATTCATTATTTCATTATTATGCAATTATTTGTACTATTAATTCATTAACTGATGTATACTGATTAACTTTTCTTTTGTTAATCATTGGATTTTTGTGTGTCTTGACGCCAAAACTCTGCCTCCATGACAAGCTTAATTTCTCATGGAAGTTTGAGAAAATATTGTGTAAATTTAATGAAAAGATTCATTTAATGTAGAAAATGTAT

Coding sequence (CDS)

ATGGCAAACCTCTTCAAAAAACTCCCACTTTTCTTCTTTCTTTTTACCCTCATTCTTCTCATCTCCGTTTCTTCTTCTTCAGCCAGATTGCTGCGCCAACAATCTCTTTCCCCCGCCCTTAAACTTGATATTCCGGCCGATCCCGCCGCACCCACAATGACCGAATATGAGTCTCTGCTTCTTGGGTTTCTTCCAAAGGGAGGATCAATCCCGCCGTCCGGACCCAGCAAAGGCACCAACAACTTCAACACTTAA

Protein sequence

MANLFKKLPLFFFLFTLILLISVSSSSARLLRQQSLSPALKLDIPADPAAPTMTEYESLLLGFLPKGGSIPPSGPSKGTNNFNT*
Homology
[Close]
BLAST of Cucsa.326040 vs. TrEMBL
Match: A0A0A0K7U2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014510 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 1.5e-38
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 1 

Query: 1  MANLFKKLPLFFFLFTLILLISVSSSSARLLRQQSLSPALKLDIPADPAAPTMTEYESLL 60
          MANLFKKLPLFFFLFTLILLISVSSSSARLLRQQSLSPALKLDIPADPAAPTMTEYESLL
Sbjct: 1  MANLFKKLPLFFFLFTLILLISVSSSSARLLRQQSLSPALKLDIPADPAAPTMTEYESLL 60

Query: 61 LGFLPKGGSIPPSGPSKGTNNFNT 85
          LGFLPKGGSIPPSGPSKGTNNFNT
Sbjct: 61 LGFLPKGGSIPPSGPSKGTNNFNT 84

[Close]
BLAST of Cucsa.326040 vs. NCBI nr
Match: gi|700190626|gb|KGN45830.1| (hypothetical protein Csa_6G014510 [Cucumis sativus])

HSP 1 Score: 166.4 bits (420), Expect = 2.2e-38
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 1 

Query: 1  MANLFKKLPLFFFLFTLILLISVSSSSARLLRQQSLSPALKLDIPADPAAPTMTEYESLL 60
          MANLFKKLPLFFFLFTLILLISVSSSSARLLRQQSLSPALKLDIPADPAAPTMTEYESLL
Sbjct: 1  MANLFKKLPLFFFLFTLILLISVSSSSARLLRQQSLSPALKLDIPADPAAPTMTEYESLL 60

Query: 61 LGFLPKGGSIPPSGPSKGTNNFNT 85
          LGFLPKGGSIPPSGPSKGTNNFNT
Sbjct: 61 LGFLPKGGSIPPSGPSKGTNNFNT 84

The following BLAST results are available for this feature:
BLAST of Cucsa.326040 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K7U2_CUCSA1.5e-38100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014510 PE=4 SV=1[more]
BLAST of Cucsa.326040 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700190626|gb|KGN45830.1|2.2e-38100.00hypothetical protein Csa_6G014510 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.326040.1Cucsa.326040.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.326040Csa6G014510Cucumber (Chinese Long) v2cgycuB465
Cucsa.326040CSPI06G02100Wild cucumber (PI 183967)cgycpiB491
Cucsa.326040CsaV3_6G002250Cucumber (Chinese Long) v3cgycucB506
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.326040Wax gourdcgywgoB659
Cucsa.326040Cucurbita maxima (Rimu)cgycmaB0903
Cucsa.326040Cucurbita maxima (Rimu)cgycmaB0905
Cucsa.326040Cucurbita moschata (Rifu)cgycmoB0903
Cucsa.326040Cucurbita moschata (Rifu)cgycmoB0900
Cucsa.326040Melon (DHL92) v3.5.1cgymeB536
Cucsa.326040Watermelon (Charleston Gray)cgywcgB562
Cucsa.326040Watermelon (97103) v1cgywmB591
Cucsa.326040Cucurbita pepo (Zucchini)cgycpeB0859
Cucsa.326040Cucurbita pepo (Zucchini)cgycpeB0861
Cucsa.326040Bottle gourd (USVL1VR-Ls)cgylsiB533
Cucsa.326040Melon (DHL92) v3.6.1cgymedB537
Cucsa.326040Melon (DHL92) v3.6.1cgymedB538
Cucsa.326040Silver-seed gourdcarcgyB0026
Cucsa.326040Silver-seed gourdcarcgyB0319
Cucsa.326040Watermelon (97103) v2cgywmbB566