CSPI06G02100 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI06G02100
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr6 : 1558450 .. 1559139 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CACATTCGCTTCACATCTCCCTAATTTTTCCTCCTCCATCTCTTCTAACTTTTCATTTTGTTTCCTTTCTTCAATGGCAAACCTCTTCAAAAAACTCCCACTTTTCTTCTTTCTTTTTACCCTCATTCTTCTCATCTCCGTTTCTTCTTCTTCAGCCAGATTGCTGCGCCAACAATCTCTTTCCCCCGCCCTTAAACTTGATATTCCGGCCGATCCCGCCGCACCCACAATGACCGAATACGAGTCTCTGCTTCTTGGGTTTCTTCCAAAAGGGGGATCAATCCCGCCGTCCGGACCCAGCAAAGGCACCAACAACTTCAACACTTAAAGAATTCTTTTCTTGGGTTTTTTCTTTTCTAATTTTTAAATCTATGTGTTTCGTTTAGGGTAAATATTGGTTCAAAAGTGATGTAGACTTAAGAGGAGAGGAGAGGTCAGAGATATTTCATTCATTATTTCATTATTATGCAATTATTTGTACTATTAATTCATTAACTGATGTATACTGATTAACTTTTCTTTTGTTAATCATTGGATTATTGTGTGTCTTGACGCCAAAACTCTGCCTCCATGACAAGCTTAATTTCTCATGGAAGTTTGAGAAAATATTGTGTAAATTTAATGAAAAGATTCATTTTAATGTAGAAAATGTATAATTTCTTTTTTATGGAATGATCGTAGTTGCCGGTG

mRNA sequence

ATGGCAAACCTCTTCAAAAAACTCCCACTTTTCTTCTTTCTTTTTACCCTCATTCTTCTCATCTCCGTTTCTTCTTCTTCAGCCAGATTGCTGCGCCAACAATCTCTTTCCCCCGCCCTTAAACTTGATATTCCGGCCGATCCCGCCGCACCCACAATGACCGAATACGAGTCTCTGCTTCTTGGGTTTCTTCCAAAAGGGGGATCAATCCCGCCGTCCGGACCCAGCAAAGGCACCAACAACTTCAACACTTAA

Coding sequence (CDS)

ATGGCAAACCTCTTCAAAAAACTCCCACTTTTCTTCTTTCTTTTTACCCTCATTCTTCTCATCTCCGTTTCTTCTTCTTCAGCCAGATTGCTGCGCCAACAATCTCTTTCCCCCGCCCTTAAACTTGATATTCCGGCCGATCCCGCCGCACCCACAATGACCGAATACGAGTCTCTGCTTCTTGGGTTTCTTCCAAAAGGGGGATCAATCCCGCCGTCCGGACCCAGCAAAGGCACCAACAACTTCAACACTTAA
Homology
[Close]
BLAST of CSPI06G02100 vs. TrEMBL
Match: A0A0A0K7U2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014510 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 8.3e-37
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 1 

Query: 1  MANLFKKLPLFFFLFTLILLISVSSSSARLLRQQSLSPALKLDIPADPAAPTMTEYESLL 60
          MANLFKKLPLFFFLFTLILLISVSSSSARLLRQQSLSPALKLDIPADPAAPTMTEYESLL
Sbjct: 1  MANLFKKLPLFFFLFTLILLISVSSSSARLLRQQSLSPALKLDIPADPAAPTMTEYESLL 60

Query: 61 LGFLPKGGSIPPSGPSKGTNNFNT 85
          LGFLPKGGSIPPSGPSKGTNNFNT
Sbjct: 61 LGFLPKGGSIPPSGPSKGTNNFNT 84

[Close]
BLAST of CSPI06G02100 vs. NCBI nr
Match: gi|700190626|gb|KGN45830.1| (hypothetical protein Csa_6G014510 [Cucumis sativus])

HSP 1 Score: 160.6 bits (405), Expect = 1.2e-36
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 1 

Query: 1  MANLFKKLPLFFFLFTLILLISVSSSSARLLRQQSLSPALKLDIPADPAAPTMTEYESLL 60
          MANLFKKLPLFFFLFTLILLISVSSSSARLLRQQSLSPALKLDIPADPAAPTMTEYESLL
Sbjct: 1  MANLFKKLPLFFFLFTLILLISVSSSSARLLRQQSLSPALKLDIPADPAAPTMTEYESLL 60

Query: 61 LGFLPKGGSIPPSGPSKGTNNFNT 85
          LGFLPKGGSIPPSGPSKGTNNFNT
Sbjct: 61 LGFLPKGGSIPPSGPSKGTNNFNT 84

The following BLAST results are available for this feature:
BLAST of CSPI06G02100 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI06G02100 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K7U2_CUCSA8.3e-37100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014510 PE=4 SV=1[more]
BLAST of CSPI06G02100 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI06G02100 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700190626|gb|KGN45830.1|1.2e-36100.00hypothetical protein Csa_6G014510 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI06G02100.1CSPI06G02100.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI06G02100Csa6G014510Cucumber (Chinese Long) v2cpicuB314
CSPI06G02100CsaV3_6G002250Cucumber (Chinese Long) v3cpicucB364
CSPI06G02100Cucsa.326040Cucumber (Gy14) v1cgycpiB491
CSPI06G02100CsGy6G002170Cucumber (Gy14) v2cgybcpiB288
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI06G02100Cucurbita pepo (Zucchini)cpecpiB199
CSPI06G02100Cucurbita pepo (Zucchini)cpecpiB461
CSPI06G02100Bottle gourd (USVL1VR-Ls)cpilsiB451
CSPI06G02100Bottle gourd (USVL1VR-Ls)cpilsiB465
CSPI06G02100Melon (DHL92) v3.6.1cpimedB464
CSPI06G02100Melon (DHL92) v3.6.1cpimedB500
CSPI06G02100Cucumber (Gy14) v2cgybcpiB187
CSPI06G02100Silver-seed gourdcarcpiB0024
CSPI06G02100Silver-seed gourdcarcpiB0301
CSPI06G02100Silver-seed gourdcarcpiB0709
CSPI06G02100Cucumber (Chinese Long) v3cpicucB357
CSPI06G02100Watermelon (97103) v2cpiwmbB447
CSPI06G02100Watermelon (97103) v2cpiwmbB508
CSPI06G02100Wax gourdcpiwgoB591
CSPI06G02100Wild cucumber (PI 183967)cpicpiB159
CSPI06G02100Cucumber (Gy14) v1cgycpiB184
CSPI06G02100Cucumber (Gy14) v1cgycpiB213
CSPI06G02100Cucurbita maxima (Rimu)cmacpiB314
CSPI06G02100Cucurbita maxima (Rimu)cmacpiB777
CSPI06G02100Cucurbita maxima (Rimu)cmacpiB783
CSPI06G02100Cucurbita maxima (Rimu)cmacpiB784
CSPI06G02100Cucurbita moschata (Rifu)cmocpiB305
CSPI06G02100Cucurbita moschata (Rifu)cmocpiB768
CSPI06G02100Cucurbita moschata (Rifu)cmocpiB773
CSPI06G02100Cucumber (Chinese Long) v2cpicuB308
CSPI06G02100Melon (DHL92) v3.5.1cpimeB476
CSPI06G02100Melon (DHL92) v3.5.1cpimeB517
CSPI06G02100Watermelon (Charleston Gray)cpiwcgB450
CSPI06G02100Watermelon (Charleston Gray)cpiwcgB516
CSPI06G02100Watermelon (97103) v1cpiwmB502
CSPI06G02100Watermelon (97103) v1cpiwmB553