Cucsa.326040.1 (mRNA) Cucumber (Gy14) v1

Overview
NameCucsa.326040.1
TypemRNA
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionUnknown protein
Locationscaffold03132 : 306562 .. 307199 (-)
Sequence length638
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CATCTCCCTAATTTTTCCTCCTCCATCTCTTCTAACTTTTCATTTTGTTTCCTTTCTTCAATGGCAAACCTCTTCAAAAAACTCCCACTTTTCTTCTTTCTTTTTACCCTCATTCTTCTCATCTCCGTTTCTTCTTCTTCAGCCAGATTGCTGCGCCAACAATCTCTTTCCCCCGCCCTTAAACTTGATATTCCGGCCGATCCCGCCGCACCCACAATGACCGAATATGAGTCTCTGCTTCTTGGGTTTCTTCCAAAGGGAGGATCAATCCCGCCGTCCGGACCCAGCAAAGGCACCAACAACTTCAACACTTAAGAATTCTTTTCTTGGGTTTTTCTTTTCTAATTTTTAAATCTATGTGTTTCGTTTAGGGTAAATATTGGTTCAAAAGTGATGTAGACTTAAGAGGAGAGGAGAGGTCAGAGATATTTCATTCATTATTTCATTATTATGCAATTATTTGTACTATTAATTCATTAACTGATGTATACTGATTAACTTTTCTTTTGTTAATCATTGGATTTTTGTGTGTCTTGACGCCAAAACTCTGCCTCCATGACAAGCTTAATTTCTCATGGAAGTTTGAGAAAATATTGTGTAAATTTAATGAAAAGATTCATTTAATGTAGAAAATGTAT

mRNA sequence

CATCTCCCTAATTTTTCCTCCTCCATCTCTTCTAACTTTTCATTTTGTTTCCTTTCTTCAATGGCAAACCTCTTCAAAAAACTCCCACTTTTCTTCTTTCTTTTTACCCTCATTCTTCTCATCTCCGTTTCTTCTTCTTCAGCCAGATTGCTGCGCCAACAATCTCTTTCCCCCGCCCTTAAACTTGATATTCCGGCCGATCCCGCCGCACCCACAATGACCGAATATGAGTCTCTGCTTCTTGGGTTTCTTCCAAAGGGAGGATCAATCCCGCCGTCCGGACCCAGCAAAGGCACCAACAACTTCAACACTTAAGAATTCTTTTCTTGGGTTTTTCTTTTCTAATTTTTAAATCTATGTGTTTCGTTTAGGGTAAATATTGGTTCAAAAGTGATGTAGACTTAAGAGGAGAGGAGAGGTCAGAGATATTTCATTCATTATTTCATTATTATGCAATTATTTGTACTATTAATTCATTAACTGATGTATACTGATTAACTTTTCTTTTGTTAATCATTGGATTTTTGTGTGTCTTGACGCCAAAACTCTGCCTCCATGACAAGCTTAATTTCTCATGGAAGTTTGAGAAAATATTGTGTAAATTTAATGAAAAGATTCATTTAATGTAGAAAATGTAT

Coding sequence (CDS)

ATGGCAAACCTCTTCAAAAAACTCCCACTTTTCTTCTTTCTTTTTACCCTCATTCTTCTCATCTCCGTTTCTTCTTCTTCAGCCAGATTGCTGCGCCAACAATCTCTTTCCCCCGCCCTTAAACTTGATATTCCGGCCGATCCCGCCGCACCCACAATGACCGAATATGAGTCTCTGCTTCTTGGGTTTCTTCCAAAGGGAGGATCAATCCCGCCGTCCGGACCCAGCAAAGGCACCAACAACTTCAACACTTAA

Protein sequence

MANLFKKLPLFFFLFTLILLISVSSSSARLLRQQSLSPALKLDIPADPAAPTMTEYESLLLGFLPKGGSIPPSGPSKGTNNFNT*
Homology
[Close]
BLAST of Cucsa.326040.1 vs. TrEMBL
Match: A0A0A0K7U2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014510 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 1.5e-38
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 1 

Query: 1  MANLFKKLPLFFFLFTLILLISVSSSSARLLRQQSLSPALKLDIPADPAAPTMTEYESLL 60
          MANLFKKLPLFFFLFTLILLISVSSSSARLLRQQSLSPALKLDIPADPAAPTMTEYESLL
Sbjct: 1  MANLFKKLPLFFFLFTLILLISVSSSSARLLRQQSLSPALKLDIPADPAAPTMTEYESLL 60

Query: 61 LGFLPKGGSIPPSGPSKGTNNFNT 85
          LGFLPKGGSIPPSGPSKGTNNFNT
Sbjct: 61 LGFLPKGGSIPPSGPSKGTNNFNT 84

[Close]
BLAST of Cucsa.326040.1 vs. NCBI nr
Match: gi|700190626|gb|KGN45830.1| (hypothetical protein Csa_6G014510 [Cucumis sativus])

HSP 1 Score: 166.4 bits (420), Expect = 2.2e-38
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 1 

Query: 1  MANLFKKLPLFFFLFTLILLISVSSSSARLLRQQSLSPALKLDIPADPAAPTMTEYESLL 60
          MANLFKKLPLFFFLFTLILLISVSSSSARLLRQQSLSPALKLDIPADPAAPTMTEYESLL
Sbjct: 1  MANLFKKLPLFFFLFTLILLISVSSSSARLLRQQSLSPALKLDIPADPAAPTMTEYESLL 60

Query: 61 LGFLPKGGSIPPSGPSKGTNNFNT 85
          LGFLPKGGSIPPSGPSKGTNNFNT
Sbjct: 61 LGFLPKGGSIPPSGPSKGTNNFNT 84

The following BLAST results are available for this feature:
BLAST of Cucsa.326040.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K7U2_CUCSA1.5e-38100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014510 PE=4 SV=1[more]
BLAST of Cucsa.326040.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700190626|gb|KGN45830.1|2.2e-38100.00hypothetical protein Csa_6G014510 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cucsa.326040Cucsa.326040gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cucsa.326040.1Cucsa.326040.1-proteinpolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsa.326040.1.five_prime_UTR.1Cucsa.326040.1.five_prime_UTR.1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsa.326040.1.CDS.1Cucsa.326040.1.CDS.1CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsa.326040.1.three_prime_UTR.1Cucsa.326040.1.three_prime_UTR.1three_prime_UTR