Cucsa.313680 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.313680
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
Description60S ribosomal protein L37a
Locationscaffold02995 : 2897524 .. 2899810 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGGGTTTTTCTGGTTTCCCAACTTCATCAAATCTTCTTCCGGAGATCTTGTGGTCAGTCAAGCAGCAATGGTAATTTCTCTTCCTTCGATTCCTCCTTGGCTCCTAAAACTTGTCCACTAACTTTGTTCCTCCGTATACAATTATCTTTCTAAATTATTCACTTTATATATTTGTATTGTTCTTTTGGACATGCTTTATCTTCTTCTTCTTTTACTACTGGAAACTAGATTTTCTTCTTCAAGAATTTGGGCTGCTTTTCCCTTTTATATATATTAAGTTCTGCCCTGTTTTATGATTCGAGTTTGCTGTCACATTTTCAATGGGCACTGAGCATTTTAGTTTTATCTCCTTTTTAATTGAAGATAACTGGAGAGATCGATCTTTTGTTACTACTTCCCCTCCCCCATTAAGTACTAGAATTGGTGAAATATGAGTACCCGTGTGGCATTGCTTGTTGTTGTTGCTACGATAAAGAAAATGCAATGCAATGCAATAGGCCTTAGAATTTGCAAATGGATTCTGCTCACAAGTATTTTGGTTTGAATTTAGTGTTGAATTCTAAAGGTGGTTACTCTCTGTAGGATTTTAATTGTCGTGACTGTTTGAGAGATTTCATGAATCATGCTCTATCAAAAGATTATTGCATTCATATTCAGTTTTAAACTGATGTCTTTCTTTTGCACAGACGAAGAGAACCAAGAAGGCAGGCATTGTTGGAAAATATGGTAAGCATTTTGAAATGTCGATTTATGATTTATAATTTCGGATTTTGCATGGTACCCATAACTGGTTTTTGCAGGGAACTCTTGTTTTTCTGCTATCGTTTTCCATCATCATTATTCTGCATTTAGTCCAGTTTGAAGCCATTTACTTCTTCCGTTTAGTTTCATTTTAGGGAAGTCATAGATGACCTTAAAGAATTAAAGAATTAGTAGTAAGTTACCAAATTTATTTGGATCAAGTGACTTCTGTAGAATTTAAACTATTAAACAATAGCTCAGGCTGAAATTGAAATATGGAAGTGATCCGTCAATATGTCTGTACAACTTAGTTGGAAATAAAAACAACTTAATCATTAATTTAAATTGTTGTTAATAAAAATTGATTCACGAAAATATCTGATGATAATTACATTTTATCCATATGTACGTTATAAAAAaCATGGCATCGTTAATTGATGGTTTTTGTTGTAAAGTACCTTAAGATATTAAGTGAACTGTGGCATGATGTACTCCAATATCATCAACAAACCATTTTGCTTGAGTTATGAAGTTATCTGCACATTCTATTTTCTTCTTCTCTTAACCTTGGATGATAACAGGTACCCGATATGGTGCCAGTCTGAGAAAACAGATCAAGAAGATGGAAGTCAGTCAGCACAGCAAATACTTCTGTGAGTTCTGTGGAAAGGCAAGTAGTTGTCCTCTCTTTCTGGCACAAGTTTTAGATTTCCTATTCGCATGTTCATGTTCCAATTATATGCTTCCCCATTGCAGTACGCAGTCAAGAGGAAGGCAGTTGGAATTTGGGGTTGCAAAGATTGTGGTAAAGTGAAAGCTGGTGGTGCCTACACTCTCAAGTAATGCTACACCTTTTGATTTTTCTTTGTTTTTTTttCTTTTATTATCGTTCTTGTTATATAAATATAGGTTAAATTGTAAATTCCATCCTCATAGTTTGGAAAAaGTTAGAAGGTAGTTTAAAAAAAaGTAAGAATTTAGTCCTTATTTTTtGATAAAaCCTAATAAACGATCTCTATGCTATGACAAAAAACCCTCGTAAAGAATCTAATACAGTGAGGTGACTATTTAGGGTTTAATCAAAACATAGAATCTAAATTCTTACTATAAACCATATGATACATTTGATTTTGATGTTATTTTTGGGTACCTTTGACAGCACTGCTAGTGCTGTGACAGTGAGAAGCACTATTAGGAGGCTGAGAGAGCAGACTGAAAGTTAAGCCATCTTCACTGCGTATTTTCGCCCTCTTTGTATGGAAAAAGATTGCTCCCTCACTACACTTTTCTTCGTTTCAATGTTGTAGGAATTGGTTATTTGAAGTTAATTGAAACTGATCCCTTTCTTCATTTCTTATACTTTTGGCCATTTTTCTATTGATCGTCAATGGAGTTTTGTTCAAGTTTACATGTTTGGTAGCTAAGGTTGACATCCATGAAATGAGTCCTCTGCTTTGTTCACAAAACTTTTTCCGATTACTAGGAGTTAATCTTACTGATTACATAATTATTCTTTTAAACCAGTGGTTTTGAAGTTATTGGTTTA

mRNA sequence

AGGGTTTTTCTGGTTTCCCAACTTCATCAAATCTTCTTCCGGAGATCTTGTGGTCAGTCAAGCAGCAATGACGAAGAGAACCAAGAAGGCAGGCATTGTTGGAAAATATGGTACCCGATATGGTGCCAGTCTGAGAAAACAGATCAAGAAGATGGAAGTCAGTCAGCACAGCAAATACTTCTGTGAGTTCTGTGGAAAGTACGCAGTCAAGAGGAAGGCAGTTGGAATTTGGGGTTGCAAAGATTGTGGTAAAGTGAAAGCTGGTGGTGCCTACACTCTCAACACTGCTAGTGCTGTGACAGTGAGAAGCACTATTAGGAGGCTGAGAGAGCAGACTGAAAGTTAAGCCATCTTCACTGCGTATTTTCGCCCTCTTTGTATGGAAAAAGATTGCTCCCTCACTACACTTTTCTTCGTTTCAATGTTGTAGGAATTGGTTATTTGAAGTTAATTGAAACTGATCCCTTTCTTCATTTCTTATACTTTTGGCCATTTTTCTATTGATCGTCAATGGAGTTTTGTTCAAGTTTACATGTTTGGTAGCTAAGGTTGACATCCATGAAATGAGTCCTCTGCTTTGTTCACAAAACTTTTTCCGATTACTAGGAGTTAATCTTACTGATTACATAATTATTCTTTTAAACCAGTGGTTTTGAAGTTATTGGTTTA

Coding sequence (CDS)

ATGACGAAGAGAACCAAGAAGGCAGGCATTGTTGGAAAATATGGTACCCGATATGGTGCCAGTCTGAGAAAACAGATCAAGAAGATGGAAGTCAGTCAGCACAGCAAATACTTCTGTGAGTTCTGTGGAAAGTACGCAGTCAAGAGGAAGGCAGTTGGAATTTGGGGTTGCAAAGATTGTGGTAAAGTGAAAGCTGGTGGTGCCTACACTCTCAACACTGCTAGTGCTGTGACAGTGAGAAGCACTATTAGGAGGCTGAGAGAGCAGACTGAAAGTTAA

Protein sequence

MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES*
Homology
[Close]
BLAST of Cucsa.313680 vs. Swiss-Prot
Match: RL37A_GOSHI (60S ribosomal protein L37a OS=Gossypium hirsutum GN=RPL37A PE=3 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 1.1e-46
Identity = 91/92 (98.91%), Postives = 91/92 (98.91%), Query Frame = 1 

Query: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60
          MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCK C
Sbjct: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKAC 60

Query: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 93
          GKVKAGGAYTLNTASAVTVRSTIRRLREQTES
Sbjct: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 92

[Close]
BLAST of Cucsa.313680 vs. Swiss-Prot
Match: RL371_ORYSJ (60S ribosomal protein L37a-1 OS=Oryza sativa subsp. japonica GN=Os01g0679700 PE=1 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 1.4e-46
Identity = 89/92 (96.74%), Postives = 92/92 (100.00%), Query Frame = 1 

Query: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60
          MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGK+AVKRKAVGIWGCKDC
Sbjct: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKFAVKRKAVGIWGCKDC 60

Query: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 93
          GKVKAGGAYT+NTASAVTVRSTIRRLREQTE+
Sbjct: 61 GKVKAGGAYTMNTASAVTVRSTIRRLREQTEA 92

[Close]
BLAST of Cucsa.313680 vs. Swiss-Prot
Match: RL372_ORYSJ (60S ribosomal protein L37a-2 OS=Oryza sativa subsp. japonica GN=Os05g0557000 PE=1 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 1.4e-46
Identity = 89/92 (96.74%), Postives = 92/92 (100.00%), Query Frame = 1 

Query: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60
          MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGK+AVKRKAVGIWGCKDC
Sbjct: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKFAVKRKAVGIWGCKDC 60

Query: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 93
          GKVKAGGAYT+NTASAVTVRSTIRRLREQTE+
Sbjct: 61 GKVKAGGAYTMNTASAVTVRSTIRRLREQTEA 92

[Close]
BLAST of Cucsa.313680 vs. Swiss-Prot
Match: RL37A_PSEMZ (60S ribosomal protein L37a OS=Pseudotsuga menziesii GN=RPL37A PE=3 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 1.2e-45
Identity = 88/91 (96.70%), Postives = 90/91 (98.90%), Query Frame = 1 

Query: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60
          MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSK+FCEFCGK+AVKRKAVGIWGCKDC
Sbjct: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKFFCEFCGKFAVKRKAVGIWGCKDC 60

Query: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTE 92
          GKVKAGGAYTLNT SAVTVRSTIRRLREQTE
Sbjct: 61 GKVKAGGAYTLNTPSAVTVRSTIRRLREQTE 91

[Close]
BLAST of Cucsa.313680 vs. Swiss-Prot
Match: R37A1_ARATH (Putative 60S ribosomal protein L37a-1 OS=Arabidopsis thaliana GN=RPL37AB PE=3 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 2.6e-45
Identity = 87/92 (94.57%), Postives = 90/92 (97.83%), Query Frame = 1 

Query: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60
          MTKRTKKA IVGKYGTRYGASLRKQIKKMEVSQH+KYFCEFCGKY+VKRK VGIWGCKDC
Sbjct: 1  MTKRTKKARIVGKYGTRYGASLRKQIKKMEVSQHNKYFCEFCGKYSVKRKVVGIWGCKDC 60

Query: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 93
          GKVKAGGAYT+NTASAVTVRSTIRRLREQTES
Sbjct: 61 GKVKAGGAYTMNTASAVTVRSTIRRLREQTES 92

[Close]
BLAST of Cucsa.313680 vs. TrEMBL
Match: A0A067JYD1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14663 PE=3 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 1.4e-45
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1 

Query: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60
          MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC
Sbjct: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60

Query: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 93
          GKVKAGGAYTLNTASAVTVRSTIRRLREQTES
Sbjct: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 92

[Close]
BLAST of Cucsa.313680 vs. TrEMBL
Match: A0A0V0GVM5_SOLCH (Putative ovule protein OS=Solanum chacoense PE=3 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 1.4e-45
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1 

Query: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60
          MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC
Sbjct: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60

Query: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 93
          GKVKAGGAYTLNTASAVTVRSTIRRLREQTES
Sbjct: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 92

[Close]
BLAST of Cucsa.313680 vs. TrEMBL
Match: A0A0B0N803_GOSAR (60S ribosomal L37a OS=Gossypium arboreum GN=F383_10947 PE=3 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 1.4e-45
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1 

Query: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60
          MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC
Sbjct: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60

Query: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 93
          GKVKAGGAYTLNTASAVTVRSTIRRLREQTES
Sbjct: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 92

[Close]
BLAST of Cucsa.313680 vs. TrEMBL
Match: M0ZN48_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400001690 PE=3 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 1.4e-45
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1 

Query: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60
          MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC
Sbjct: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60

Query: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 93
          GKVKAGGAYTLNTASAVTVRSTIRRLREQTES
Sbjct: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 92

[Close]
BLAST of Cucsa.313680 vs. TrEMBL
Match: M5WNW1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013350mg PE=3 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 1.4e-45
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1 

Query: 1   MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60
           MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC
Sbjct: 37  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 96

Query: 61  GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 93
           GKVKAGGAYTLNTASAVTVRSTIRRLREQTES
Sbjct: 97  GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 128

[Close]
BLAST of Cucsa.313680 vs. TAIR10
Match: AT3G10950.1 (AT3G10950.1 Zinc-binding ribosomal protein family protein)

HSP 1 Score: 182.2 bits (461), Expect = 1.5e-46
Identity = 87/92 (94.57%), Postives = 90/92 (97.83%), Query Frame = 1 

Query: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60
          MTKRTKKA IVGKYGTRYGASLRKQIKKMEVSQH+KYFCEFCGKY+VKRK VGIWGCKDC
Sbjct: 1  MTKRTKKARIVGKYGTRYGASLRKQIKKMEVSQHNKYFCEFCGKYSVKRKVVGIWGCKDC 60

Query: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 93
          GKVKAGGAYT+NTASAVTVRSTIRRLREQTES
Sbjct: 61 GKVKAGGAYTMNTASAVTVRSTIRRLREQTES 92

[Close]
BLAST of Cucsa.313680 vs. TAIR10
Match: AT3G60245.1 (AT3G60245.1 Zinc-binding ribosomal protein family protein)

HSP 1 Score: 179.5 bits (454), Expect = 9.6e-46
Identity = 85/91 (93.41%), Postives = 87/91 (95.60%), Query Frame = 1 

Query: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60
          M KRTKK GIVGKYGTRYGAS+RKQIKKMEVSQHSKYFCEFCGKY VKRKAVGIWGCKDC
Sbjct: 1  MAKRTKKVGIVGKYGTRYGASIRKQIKKMEVSQHSKYFCEFCGKYGVKRKAVGIWGCKDC 60

Query: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTE 92
          GKVKAGGAYT+NTASAVTVRSTIRRLREQ E
Sbjct: 61 GKVKAGGAYTMNTASAVTVRSTIRRLREQIE 91

[Close]
BLAST of Cucsa.313680 vs. NCBI nr
Match: gi|641866750|gb|KDO85434.1| (hypothetical protein CISIN_1g045338mg [Citrus sinensis])

HSP 1 Score: 189.9 bits (481), Expect = 2.0e-45
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1 

Query: 1   MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60
           MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC
Sbjct: 43  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 102

Query: 61  GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 93
           GKVKAGGAYTLNTASAVTVRSTIRRLREQTES
Sbjct: 103 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 134

[Close]
BLAST of Cucsa.313680 vs. NCBI nr
Match: gi|595849622|ref|XP_007209764.1| (hypothetical protein PRUPE_ppa013350mg [Prunus persica])

HSP 1 Score: 189.9 bits (481), Expect = 2.0e-45
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1 

Query: 1   MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60
           MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC
Sbjct: 37  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 96

Query: 61  GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 93
           GKVKAGGAYTLNTASAVTVRSTIRRLREQTES
Sbjct: 97  GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 128

[Close]
BLAST of Cucsa.313680 vs. NCBI nr
Match: gi|225427377|ref|XP_002282974.1| (PREDICTED: 60S ribosomal protein L37a [Vitis vinifera])

HSP 1 Score: 189.9 bits (481), Expect = 2.0e-45
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1 

Query: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60
          MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC
Sbjct: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60

Query: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 93
          GKVKAGGAYTLNTASAVTVRSTIRRLREQTES
Sbjct: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 92

[Close]
BLAST of Cucsa.313680 vs. NCBI nr
Match: gi|565482480|ref|XP_006298880.1| (hypothetical protein CARUB_v10015000mg [Capsella rubella])

HSP 1 Score: 189.1 bits (479), Expect = 3.4e-45
Identity = 91/92 (98.91%), Postives = 92/92 (100.00%), Query Frame = 1 

Query: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60
          MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC
Sbjct: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60

Query: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 93
          GKVKAGGAYT+NTASAVTVRSTIRRLREQTES
Sbjct: 61 GKVKAGGAYTMNTASAVTVRSTIRRLREQTES 92

[Close]
BLAST of Cucsa.313680 vs. NCBI nr
Match: gi|702335612|ref|XP_010055398.1| (PREDICTED: 60S ribosomal protein L37a [Eucalyptus grandis])

HSP 1 Score: 189.1 bits (479), Expect = 3.4e-45
Identity = 90/92 (97.83%), Postives = 92/92 (100.00%), Query Frame = 1 

Query: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60
          MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVG+WGCKDC
Sbjct: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGVWGCKDC 60

Query: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 93
          GK+KAGGAYTLNTASAVTVRSTIRRLREQTES
Sbjct: 61 GKIKAGGAYTLNTASAVTVRSTIRRLREQTES 92

The following BLAST results are available for this feature:
BLAST of Cucsa.313680 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RL37A_GOSHI1.1e-4698.9160S ribosomal protein L37a OS=Gossypium hirsutum GN=RPL37A PE=3 SV=1[more]
RL371_ORYSJ1.4e-4696.7460S ribosomal protein L37a-1 OS=Oryza sativa subsp. japonica GN=Os01g0679700 PE=... [more]
RL372_ORYSJ1.4e-4696.7460S ribosomal protein L37a-2 OS=Oryza sativa subsp. japonica GN=Os05g0557000 PE=... [more]
RL37A_PSEMZ1.2e-4596.7060S ribosomal protein L37a OS=Pseudotsuga menziesii GN=RPL37A PE=3 SV=1[more]
R37A1_ARATH2.6e-4594.57Putative 60S ribosomal protein L37a-1 OS=Arabidopsis thaliana GN=RPL37AB PE=3 SV... [more]
BLAST of Cucsa.313680 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A067JYD1_JATCU1.4e-45100.00Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14663 PE=3 SV=1[more]
A0A0V0GVM5_SOLCH1.4e-45100.00Putative ovule protein OS=Solanum chacoense PE=3 SV=1[more]
A0A0B0N803_GOSAR1.4e-45100.0060S ribosomal L37a OS=Gossypium arboreum GN=F383_10947 PE=3 SV=1[more]
M0ZN48_SOLTU1.4e-45100.00Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400001690 PE=3 SV=1[more]
M5WNW1_PRUPE1.4e-45100.00Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013350mg PE=3 SV=1[more]
BLAST of Cucsa.313680 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G10950.11.5e-4694.57 Zinc-binding ribosomal protein family protein[more]
AT3G60245.19.6e-4693.41 Zinc-binding ribosomal protein family protein[more]
BLAST of Cucsa.313680 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|641866750|gb|KDO85434.1|2.0e-45100.00hypothetical protein CISIN_1g045338mg [Citrus sinensis][more]
gi|595849622|ref|XP_007209764.1|2.0e-45100.00hypothetical protein PRUPE_ppa013350mg [Prunus persica][more]
gi|225427377|ref|XP_002282974.1|2.0e-45100.00PREDICTED: 60S ribosomal protein L37a [Vitis vinifera][more]
gi|565482480|ref|XP_006298880.1|3.4e-4598.91hypothetical protein CARUB_v10015000mg [Capsella rubella][more]
gi|702335612|ref|XP_010055398.1|3.4e-4597.83PREDICTED: 60S ribosomal protein L37a [Eucalyptus grandis][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0022625 cytosolic large ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0046872 metal ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.313680.1Cucsa.313680.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.313680Cla016113Watermelon (97103) v1cgywmB561
Cucsa.313680Cla021388Watermelon (97103) v1cgywmB569
Cucsa.313680MELO3C003342Melon (DHL92) v3.5.1cgymeB517
Cucsa.313680ClCG09G012610Watermelon (Charleston Gray)cgywcgB534
Cucsa.313680ClCG05G002990Watermelon (Charleston Gray)cgywcgB540
Cucsa.313680CSPI03G47330Wild cucumber (PI 183967)cgycpiB473
Cucsa.313680CmaCh19G003880Cucurbita maxima (Rimu)cgycmaB0868
Cucsa.313680CmoCh19G003960Cucurbita moschata (Rifu)cgycmoB0867
Cucsa.313680CmoCh14G019760Cucurbita moschata (Rifu)cgycmoB0859
Cucsa.313680Lsi05G000320Bottle gourd (USVL1VR-Ls)cgylsiB506
Cucsa.313680Lsi05G018760Bottle gourd (USVL1VR-Ls)cgylsiB508
Cucsa.313680Cp4.1LG15g02940Cucurbita pepo (Zucchini)cgycpeB0818
Cucsa.313680MELO3C003342.2Melon (DHL92) v3.6.1cgymedB517
Cucsa.313680MELO3C006280.2Melon (DHL92) v3.6.1cgymedB519
Cucsa.313680CsaV3_3G010610Cucumber (Chinese Long) v3cgycucB489
Cucsa.313680Cla97C05G083620Watermelon (97103) v2cgywmbB542
Cucsa.313680Cla97C09G175420Watermelon (97103) v2cgywmbB549
Cucsa.313680Bhi05G000399Wax gourdcgywgoB625
Cucsa.313680Bhi01G000131Wax gourdcgywgoB623
Cucsa.313680Carg25075Silver-seed gourdcarcgyB0259
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cucsa.313680Cucsa.256770Cucumber (Gy14) v1cgycgyB127
The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.313680Melon (DHL92) v3.6.1cgymedB518
Cucsa.313680Silver-seed gourdcarcgyB0641
Cucsa.313680Silver-seed gourdcarcgyB0790
Cucsa.313680Silver-seed gourdcarcgyB0890
Cucsa.313680Cucumber (Chinese Long) v3cgycucB487
Cucsa.313680Cucumber (Chinese Long) v3cgycucB488
Cucsa.313680Watermelon (97103) v2cgywmbB538
Cucsa.313680Wax gourdcgywgoB622
Cucsa.313680Cucumber (Gy14) v1cgycgyB146
Cucsa.313680Cucurbita maxima (Rimu)cgycmaB0861
Cucsa.313680Cucurbita maxima (Rimu)cgycmaB0869
Cucsa.313680Cucurbita maxima (Rimu)cgycmaB0870
Cucsa.313680Cucurbita maxima (Rimu)cgycmaB0878
Cucsa.313680Cucurbita moschata (Rifu)cgycmoB0860
Cucsa.313680Cucurbita moschata (Rifu)cgycmoB0868
Cucsa.313680Cucurbita moschata (Rifu)cgycmoB0870
Cucsa.313680Cucurbita moschata (Rifu)cgycmoB0875
Cucsa.313680Wild cucumber (PI 183967)cgycpiB474
Cucsa.313680Cucumber (Chinese Long) v2cgycuB450
Cucsa.313680Cucumber (Chinese Long) v2cgycuB451
Cucsa.313680Melon (DHL92) v3.5.1cgymeB518
Cucsa.313680Watermelon (Charleston Gray)cgywcgB535
Cucsa.313680Watermelon (97103) v1cgywmB563
Cucsa.313680Cucurbita pepo (Zucchini)cgycpeB0815
Cucsa.313680Cucurbita pepo (Zucchini)cgycpeB0826
Cucsa.313680Bottle gourd (USVL1VR-Ls)cgylsiB510