CmoCh19G003960 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh19G003960
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	60S ribosomal protein L37a-2
Location	Cmo_Chr19 : 4601356 .. 4603857 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATTCTAGGGTTTCTCTCTGGTTCAAGTTCTTCCCACTTTCACCAAATCTTCTCCCGGAGATATTGTGGTCGGCCGAGCAGAAATGGTAATTTCTCTCCCTTCGAAAAAGAGATTGCGTATTTTGGTTTGATTTTATCTTTCACCACCGTGCTGAACTCCAATGGGTTGTTATTATCTGTTAGCATGTTAATTGTCACAACTATCCGATAGATTTCATGAATGATGCTCCATGAAGGGATTAAGTGTTTTTCAATGCAATTAGCTTGAATCCAAAGTTTGGGAGTAGTTGATATGGTTCTATGGAAACTGCCATGATTTCAGTAGGAACTGTGCTGCTTGCTTTGTTTTTTAGATTTTTCTTCGTGCTTTGTTACGCTGTTCATATACACCTTTACGCATTTCTTGATACTTCGAGATCCGAATTATGTATTGAAAATGAAATGCTTAACTTTCTTTTGTGAGAATTGAATATTTCATTCATATTTCATTCGATGTGAAAAGTTTTAAACTGATGTCTTTGTTTTTTACACAGACAAAGAGAACCAAGAAGGCAGGCATTGTTGGAAAATATGGTAAATATTTAATAATTTCGATTTATGATTTATAATTTATTAGCTTGGGCGTACATAACTATTTTTCTTTGAGAATGCTTGTTTTTGTATTATCGTACTCAATTATCTTACTTCTGATTCTGCCCTTGGTTCTATGTTTCATCCAAAGAATTTCCAGTGAGTTGCTTGATTCGTAGGAAAACTATCCTAGTATCCTGTCTGAGCCATGCAGTATTTTTACCTGATTTCTCATCTTAGAGAAGTCATGGACGACCTTTAAAGATTTATTAATAAGTTTCCGTAACTATTAAGATCAAAGAGAGAATTTTCTTATGTAGACGTCAAACCTTATAAAGAATTTCCTTATCTGGGAATTGATCAAATGGCACTGTTAATTTATGGTATTCGTAGTAAGATTCACTGTTTTCCTTAAAGTTGCGGGAGGTGTGCTCCTGGGCACAAGGTCCAGCTGGAGCGCCTCGCCTCTCGGAAGGCGTGGCCAAGGCGCATGCCTTCCAAGAAGCATAGAGGCGCTCACTCAACATGCCTCTAGTGATTCTTTAGTTTTTTTTAACCTTTTAACTAAGTGCAGCATAAGGATTATTATTGTAAAAGTAATAATGATATTTGTATCTTATCCCTAAATTCAATAGTTTCTGCATTTATTTTTCTTTTTAATGAAAAAAATTGATTTCCCTTCGATCTATCTTACTTCTTCACGTGTTCATCTTTATATGTTTTTGTGTTAAAATCCCAGTGTTTCTTAGTGTGTATATATATGTATGTATCTATATATTTTATGTTCTTTGTATATCGTGTGCTTTGCCAAAGAAAGCCTGTGTCTTTTTTTGCGCTTTATGCATAAGCCCGCACCAGTGTGTCTTGGGTTTAAAAAACACTTAAAATGTTGTGTGTAATGTGGGACATATACATCAATATCATCAACAAACCTTATTGCTTGGTTTATGAATATATCTCTGCATGTGATCACGATTATAACTGCTGTGAGATCCCACATCGGTTGTAGAGGGGAACGAAGCATTCCTTATAAGGGTGTAAAAACTTCTCCCTAGTAGACATGTTTTAAAATCGTGAGGTTGATGGCGATACGTAACGGGCCAAAGCGGACAATATCTGCTGGCAGTGGGTTTGAGTTGTTACAACTGCAGACTCATGTGTATATAATATCTGGCTCACCTCTTTGCATGGAGGATTTTCGATTTCTATTTTCTTCTCTCAACTTCGGCTGATAACAGGTACCCGATACGGTGCCAGTCTGAGAAAGCAGATTAAAAAGATGGAAGTCAGTCAGCACAGCAAATACTTTTGTGAGTTCTGTGGAAAGGCAAGTAGTTGTGCTCCTTTTTTGCCCAAGTTTTTCATTTCCAAGTCACTTAGTCTTCATGTTCCAATTATATGCTTCCCCATTGCAGTATGCAGTTAAGAGGAAGGCAGTTGGAATTTGGGGCTGCAAAGATTGTGGTAAAGTGAAGGCCGGAGGTGCTTACACTCTTAAGTAAGGATCTTACTTCTTTTTGTTCTTGTTTGTTCTTTTTCAAGTTCCTTTTCAGTTTTTGTTGTTTAAATGTATTTGATTTTGATGTTATTTTTGGTACCTTTGACAGCACTGCTAGTGCTGTGACAGTGAGGAGCACTATTAGGAGGCTGAGAGAGCAAACTGAAAGCTAAGCCATCTTCACTGCGTATTTGATATTTTTCTTTCTTTTTTTTTTTTTTTTCTAAAAGGAAAAGGATTGCTCCCTCCCTAGACTTATCTTCATATCAATGTTGTAGGAATTGGTTATTTTAAGTTAATTGAAACTGATCTTTTCTTCATTTCTTATATCGCACCAATTTCTTGTAATAGATTCTATTGATCATCAATTGAGTTTTACTCAAGTAACGCATTTGGTGGCGAAAGTTGAAATTGATCGAATGACTTGTTTGCTA

mRNA sequence

TATTCTAGGGTTTCTCTCTGGTTCAAGTTCTTCCCACTTTCACCAAATCTTCTCCCGGAGATATTGTGGTCGGCCGAGCAGAAATGACAAAGAGAACCAAGAAGGCAGGCATTGTTGGAAAATATGTAAGATTCACTGTTTTCCTTAAAGTTGCGGGAGGTGTGCTCCTGGGCACAAGGTCCAGCTGGAGCGCCTCGCCTCTCGGAAGGCGTGGCCAAGGCGCATGCCTTCCAAGAAGCATAGAGGCGCTCACTCAACATGCCTCTAGTACCCGATACGGTGCCAGTCTGAGAAAGCAGATTAAAAAGATGGAAGTCAGTCAGCACAGCAAATACTTTTGTGAGTTCTGTGGAAAGGCAAGTAGTTGTGCTCCTTTTTTGCCCAAGTTTTTCATTTCCAAGTCACTTAGTCTTCATTATGCAGTTAAGAGGAAGGCAGTTGGAATTTGGGGCTGCAAAGATTGTGGTAAAGTGAAGGCCGGAGGTGCTTACACTCTTAACACTGCTAGTGCTGTGACAGTGAGGAGCACTATTAGGAGGCTGAGAGAGCAAACTGAAAGCTAAGCCATCTTCACTGCGTATTTGATATTTTTCTTTCTTTTTTTTTTTTTTTTCTAAAAGGAAAAGGATTGCTCCCTCCCTAGACTTATCTTCATATCAATGTTGTAGGAATTGGTTATTTTAAGTTAATTGAAACTGATCTTTTCTTCATTTCTTATATCGCACCAATTTCTTGTAATAGATTCTATTGATCATCAATTGAGTTTTACTCAAGTAACGCATTTGGTGGCGAAAGTTGAAATTGATCGAATGACTTGTTTGCTA

Coding sequence (CDS)

ATGACAAAGAGAACCAAGAAGGCAGGCATTGTTGGAAAATATGTAAGATTCACTGTTTTCCTTAAAGTTGCGGGAGGTGTGCTCCTGGGCACAAGGTCCAGCTGGAGCGCCTCGCCTCTCGGAAGGCGTGGCCAAGGCGCATGCCTTCCAAGAAGCATAGAGGCGCTCACTCAACATGCCTCTAGTACCCGATACGGTGCCAGTCTGAGAAAGCAGATTAAAAAGATGGAAGTCAGTCAGCACAGCAAATACTTTTGTGAGTTCTGTGGAAAGGCAAGTAGTTGTGCTCCTTTTTTGCCCAAGTTTTTCATTTCCAAGTCACTTAGTCTTCATTATGCAGTTAAGAGGAAGGCAGTTGGAATTTGGGGCTGCAAAGATTGTGGTAAAGTGAAGGCCGGAGGTGCTTACACTCTTAACACTGCTAGTGCTGTGACAGTGAGGAGCACTATTAGGAGGCTGAGAGAGCAAACTGAAAGCTAA

Homology

[Close]

BLAST of CmoCh19G003960 vs. Swiss-Prot
Match: RL37A_GOSHI (60S ribosomal protein L37a OS=Gossypium hirsutum GN=RPL37A PE=3 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 6.7e-33
Identity = 76/97 (78.35%), Postives = 76/97 (78.35%), Query Frame = 1


Query: 63  TRYGASLRKQIKKMEVSQHSKYFCEFCGKASSCAPFLPKFFISKSLSLHYAVKRKAVGIW 122
           TRYGASLRKQIKKMEVSQHSKYFCEFCGK                    YAVKRKAVGIW
Sbjct: 16  TRYGASLRKQIKKMEVSQHSKYFCEFCGK--------------------YAVKRKAVGIW 75

Query: 123 GCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 160
           GCK CGKVKAGGAYTLNTASAVTVRSTIRRLREQTES
Sbjct: 76  GCKACGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 92

[Close]

BLAST of CmoCh19G003960 vs. Swiss-Prot
Match: RL371_ORYSJ (60S ribosomal protein L37a-1 OS=Oryza sativa subsp. japonica GN=Os01g0679700 PE=1 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 8.8e-33
Identity = 74/97 (76.29%), Postives = 77/97 (79.38%), Query Frame = 1


Query: 63  TRYGASLRKQIKKMEVSQHSKYFCEFCGKASSCAPFLPKFFISKSLSLHYAVKRKAVGIW 122
           TRYGASLRKQIKKMEVSQHSKYFCEFCGK                    +AVKRKAVGIW
Sbjct: 16  TRYGASLRKQIKKMEVSQHSKYFCEFCGK--------------------FAVKRKAVGIW 75

Query: 123 GCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 160
           GCKDCGKVKAGGAYT+NTASAVTVRSTIRRLREQTE+
Sbjct: 76  GCKDCGKVKAGGAYTMNTASAVTVRSTIRRLREQTEA 92

[Close]

BLAST of CmoCh19G003960 vs. Swiss-Prot
Match: RL372_ORYSJ (60S ribosomal protein L37a-2 OS=Oryza sativa subsp. japonica GN=Os05g0557000 PE=1 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 8.8e-33
Identity = 74/97 (76.29%), Postives = 77/97 (79.38%), Query Frame = 1


Query: 63  TRYGASLRKQIKKMEVSQHSKYFCEFCGKASSCAPFLPKFFISKSLSLHYAVKRKAVGIW 122
           TRYGASLRKQIKKMEVSQHSKYFCEFCGK                    +AVKRKAVGIW
Sbjct: 16  TRYGASLRKQIKKMEVSQHSKYFCEFCGK--------------------FAVKRKAVGIW 75

Query: 123 GCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 160
           GCKDCGKVKAGGAYT+NTASAVTVRSTIRRLREQTE+
Sbjct: 76  GCKDCGKVKAGGAYTMNTASAVTVRSTIRRLREQTEA 92

[Close]

BLAST of CmoCh19G003960 vs. Swiss-Prot
Match: R37A1_ARATH (Putative 60S ribosomal protein L37a-1 OS=Arabidopsis thaliana GN=RPL37AB PE=3 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 2.0e-32
Identity = 73/97 (75.26%), Postives = 76/97 (78.35%), Query Frame = 1


Query: 63  TRYGASLRKQIKKMEVSQHSKYFCEFCGKASSCAPFLPKFFISKSLSLHYAVKRKAVGIW 122
           TRYGASLRKQIKKMEVSQH+KYFCEFCGK                    Y+VKRK VGIW
Sbjct: 16  TRYGASLRKQIKKMEVSQHNKYFCEFCGK--------------------YSVKRKVVGIW 75

Query: 123 GCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 160
           GCKDCGKVKAGGAYT+NTASAVTVRSTIRRLREQTES
Sbjct: 76  GCKDCGKVKAGGAYTMNTASAVTVRSTIRRLREQTES 92

[Close]

BLAST of CmoCh19G003960 vs. Swiss-Prot
Match: RL37A_PSEMZ (60S ribosomal protein L37a OS=Pseudotsuga menziesii GN=RPL37A PE=3 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 7.4e-32
Identity = 73/96 (76.04%), Postives = 75/96 (78.12%), Query Frame = 1


Query: 63  TRYGASLRKQIKKMEVSQHSKYFCEFCGKASSCAPFLPKFFISKSLSLHYAVKRKAVGIW 122
           TRYGASLRKQIKKMEVSQHSK+FCEFCGK                    +AVKRKAVGIW
Sbjct: 16  TRYGASLRKQIKKMEVSQHSKFFCEFCGK--------------------FAVKRKAVGIW 75

Query: 123 GCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 159
           GCKDCGKVKAGGAYTLNT SAVTVRSTIRRLREQTE
Sbjct: 76  GCKDCGKVKAGGAYTLNTPSAVTVRSTIRRLREQTE 91

[Close]

BLAST of CmoCh19G003960 vs. TrEMBL
Match: A0A0E0JMF3_ORYPU (Uncharacterized protein OS=Oryza punctata PE=3 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 9.5e-34
Identity = 94/159 (59.12%), Postives = 103/159 (64.78%), Query Frame = 1


Query: 1   MTKRTKKAGIVGKYVRFTVFLKVAGGVLLGTRSSWSASPLGRRGQGACLPRSIEALTQHA 60
           MTKRTKKAGIVGKY     F K++   LL   S +S                 +  + + 
Sbjct: 1   MTKRTKKAGIVGKYGM--EFCKLS--YLLAHVSVFS-----------------QLNSSNI 60

Query: 61  SSTRYGASLRKQIKKMEVSQHSKYFCEFCGKASSCAPFLPKFFISKSLSLHYAVKRKAVG 120
             TRYGASLRKQIKKMEVSQHSKYFCEFCGK                    +AVKRKAVG
Sbjct: 61  IGTRYGASLRKQIKKMEVSQHSKYFCEFCGK--------------------FAVKRKAVG 118

Query: 121 IWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 160
           IWGCKDCGKVKAGGAYT+NTASAVTVRSTIRRLREQTE+
Sbjct: 121 IWGCKDCGKVKAGGAYTMNTASAVTVRSTIRRLREQTEA 118

[Close]

BLAST of CmoCh19G003960 vs. TrEMBL
Match: A0A103XDD5_CYNCS (Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_026305 PE=3 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 2.1e-33
Identity = 79/97 (81.44%), Postives = 80/97 (82.47%), Query Frame = 1


Query: 63  TRYGASLRKQIKKMEVSQHSKYFCEFCGKASSCAPFLPKFFISKSLSLHYAVKRKAVGIW 122
           TRYGASLRKQIKKMEVSQHSKYFCEFCGK      F       K +   YAVKRKAVGIW
Sbjct: 50  TRYGASLRKQIKKMEVSQHSKYFCEFCGKLRKRINFC------KCVFFRYAVKRKAVGIW 109

Query: 123 GCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 160
           GCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES
Sbjct: 110 GCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 140

[Close]

BLAST of CmoCh19G003960 vs. TrEMBL
Match: A0A103XUH6_CYNCS (Ribosomal protein L37ae (Fragment) OS=Cynara cardunculus var. scolymus GN=Ccrd_000748 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 4.0e-32
Identity = 78/98 (79.59%), Postives = 78/98 (79.59%), Query Frame = 1


Query: 62  STRYGASLRKQIKKMEVSQHSKYFCEFCGKASSCAPFLPKFFISKSLSLHYAVKRKAVGI 121
           STRYGASLRKQIKKMEVSQHSKYFCEFCGK                    YAVKRKAVGI
Sbjct: 114 STRYGASLRKQIKKMEVSQHSKYFCEFCGK--------------------YAVKRKAVGI 173

Query: 122 WGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 160
           WGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES
Sbjct: 174 WGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 191

[Close]

BLAST of CmoCh19G003960 vs. TrEMBL
Match: D7TTK2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0012g00100 PE=3 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 5.2e-32
Identity = 80/112 (71.43%), Postives = 82/112 (73.21%), Query Frame = 1


Query: 48  CLPRSIEALTQHASSTRYGASLRKQIKKMEVSQHSKYFCEFCGKASSCAPFLPKFFISKS 107
           C  R+ +A       TRYGASLRKQIKKMEVSQHSKYFCEFCGK                
Sbjct: 8   CTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGK---------------- 67

Query: 108 LSLHYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 160
               YAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES
Sbjct: 68  ----YAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 99

[Close]

BLAST of CmoCh19G003960 vs. TrEMBL
Match: A0A0D2Q049_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G230300 PE=3 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 8.9e-32
Identity = 77/97 (79.38%), Postives = 77/97 (79.38%), Query Frame = 1


Query: 63  TRYGASLRKQIKKMEVSQHSKYFCEFCGKASSCAPFLPKFFISKSLSLHYAVKRKAVGIW 122
           TRYGASLRKQIKKMEVSQHSKYFCEFCGK                    YAVKRKAVGIW
Sbjct: 20  TRYGASLRKQIKKMEVSQHSKYFCEFCGK--------------------YAVKRKAVGIW 79

Query: 123 GCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 160
           GCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES
Sbjct: 80  GCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 96

[Close]

BLAST of CmoCh19G003960 vs. TAIR10
Match: AT3G10950.1 (AT3G10950.1 Zinc-binding ribosomal protein family protein)

HSP 1 Score: 140.2 bits (352), Expect = 1.1e-33
Identity = 73/97 (75.26%), Postives = 76/97 (78.35%), Query Frame = 1


Query: 63  TRYGASLRKQIKKMEVSQHSKYFCEFCGKASSCAPFLPKFFISKSLSLHYAVKRKAVGIW 122
           TRYGASLRKQIKKMEVSQH+KYFCEFCGK                    Y+VKRK VGIW
Sbjct: 16  TRYGASLRKQIKKMEVSQHNKYFCEFCGK--------------------YSVKRKVVGIW 75

Query: 123 GCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 160
           GCKDCGKVKAGGAYT+NTASAVTVRSTIRRLREQTES
Sbjct: 76  GCKDCGKVKAGGAYTMNTASAVTVRSTIRRLREQTES 92

[Close]

BLAST of CmoCh19G003960 vs. TAIR10
Match: AT3G60245.1 (AT3G60245.1 Zinc-binding ribosomal protein family protein)

HSP 1 Score: 137.9 bits (346), Expect = 5.5e-33
Identity = 72/96 (75.00%), Postives = 74/96 (77.08%), Query Frame = 1


Query: 63  TRYGASLRKQIKKMEVSQHSKYFCEFCGKASSCAPFLPKFFISKSLSLHYAVKRKAVGIW 122
           TRYGAS+RKQIKKMEVSQHSKYFCEFCGK                    Y VKRKAVGIW
Sbjct: 16  TRYGASIRKQIKKMEVSQHSKYFCEFCGK--------------------YGVKRKAVGIW 75

Query: 123 GCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 159
           GCKDCGKVKAGGAYT+NTASAVTVRSTIRRLREQ E
Sbjct: 76  GCKDCGKVKAGGAYTMNTASAVTVRSTIRRLREQIE 91

[Close]

BLAST of CmoCh19G003960 vs. NCBI nr
Match: gi|976900409|gb|KVH88611.1| (hypothetical protein Ccrd_026305 [Cynara cardunculus var. scolymus])

HSP 1 Score: 150.2 bits (378), Expect = 3.0e-33
Identity = 79/97 (81.44%), Postives = 80/97 (82.47%), Query Frame = 1


Query: 63  TRYGASLRKQIKKMEVSQHSKYFCEFCGKASSCAPFLPKFFISKSLSLHYAVKRKAVGIW 122
           TRYGASLRKQIKKMEVSQHSKYFCEFCGK      F       K +   YAVKRKAVGIW
Sbjct: 50  TRYGASLRKQIKKMEVSQHSKYFCEFCGKLRKRINFC------KCVFFRYAVKRKAVGIW 109

Query: 123 GCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 160
           GCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES
Sbjct: 110 GCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 140

[Close]

BLAST of CmoCh19G003960 vs. NCBI nr
Match: gi|976910465|gb|KVH97157.1| (Ribosomal protein L37ae, partial [Cynara cardunculus var. scolymus])

HSP 1 Score: 146.0 bits (367), Expect = 5.7e-32
Identity = 78/98 (79.59%), Postives = 78/98 (79.59%), Query Frame = 1


Query: 62  STRYGASLRKQIKKMEVSQHSKYFCEFCGKASSCAPFLPKFFISKSLSLHYAVKRKAVGI 121
           STRYGASLRKQIKKMEVSQHSKYFCEFCGK                    YAVKRKAVGI
Sbjct: 114 STRYGASLRKQIKKMEVSQHSKYFCEFCGK--------------------YAVKRKAVGI 173

Query: 122 WGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 160
           WGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES
Sbjct: 174 WGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 191

[Close]

BLAST of CmoCh19G003960 vs. NCBI nr
Match: gi|297742195|emb|CBI33982.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 145.6 bits (366), Expect = 7.5e-32
Identity = 80/112 (71.43%), Postives = 82/112 (73.21%), Query Frame = 1


Query: 48  CLPRSIEALTQHASSTRYGASLRKQIKKMEVSQHSKYFCEFCGKASSCAPFLPKFFISKS 107
           C  R+ +A       TRYGASLRKQIKKMEVSQHSKYFCEFCGK                
Sbjct: 8   CTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGK---------------- 67

Query: 108 LSLHYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 160
               YAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES
Sbjct: 68  ----YAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 99

[Close]

BLAST of CmoCh19G003960 vs. NCBI nr
Match: gi|641866750|gb|KDO85434.1| (hypothetical protein CISIN_1g045338mg [Citrus sinensis])

HSP 1 Score: 144.8 bits (364), Expect = 1.3e-31
Identity = 77/97 (79.38%), Postives = 77/97 (79.38%), Query Frame = 1


Query: 63  TRYGASLRKQIKKMEVSQHSKYFCEFCGKASSCAPFLPKFFISKSLSLHYAVKRKAVGIW 122
           TRYGASLRKQIKKMEVSQHSKYFCEFCGK                    YAVKRKAVGIW
Sbjct: 58  TRYGASLRKQIKKMEVSQHSKYFCEFCGK--------------------YAVKRKAVGIW 117

Query: 123 GCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 160
           GCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES
Sbjct: 118 GCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 134

[Close]

BLAST of CmoCh19G003960 vs. NCBI nr
Match: gi|413968440|gb|AFW90557.1| (60S ribosomal protein L37a [Solanum tuberosum])

HSP 1 Score: 144.8 bits (364), Expect = 1.3e-31
Identity = 77/97 (79.38%), Postives = 77/97 (79.38%), Query Frame = 1


Query: 63  TRYGASLRKQIKKMEVSQHSKYFCEFCGKASSCAPFLPKFFISKSLSLHYAVKRKAVGIW 122
           TRYGASLRKQIKKMEVSQHSKYFCEFCGK                    YAVKRKAVGIW
Sbjct: 16  TRYGASLRKQIKKMEVSQHSKYFCEFCGK--------------------YAVKRKAVGIW 75

Query: 123 GCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 160
           GCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES
Sbjct: 76  GCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 92

The following BLAST results are available for this feature:

BLAST of CmoCh19G003960 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RL37A_GOSHI	6.7e-33	78.35	60S ribosomal protein L37a OS=Gossypium hirsutum GN=RPL37A PE=3 SV=1	[more]
RL371_ORYSJ	8.8e-33	76.29	60S ribosomal protein L37a-1 OS=Oryza sativa subsp. japonica GN=Os01g0679700 PE=...	[more]
RL372_ORYSJ	8.8e-33	76.29	60S ribosomal protein L37a-2 OS=Oryza sativa subsp. japonica GN=Os05g0557000 PE=...	[more]
R37A1_ARATH	2.0e-32	75.26	Putative 60S ribosomal protein L37a-1 OS=Arabidopsis thaliana GN=RPL37AB PE=3 SV...	[more]
RL37A_PSEMZ	7.4e-32	76.04	60S ribosomal protein L37a OS=Pseudotsuga menziesii GN=RPL37A PE=3 SV=1	[more]

BLAST of CmoCh19G003960 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0E0JMF3_ORYPU	9.5e-34	59.12	Uncharacterized protein OS=Oryza punctata PE=3 SV=1	[more]
A0A103XDD5_CYNCS	2.1e-33	81.44	Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_026305 PE=3 ...	[more]
A0A103XUH6_CYNCS	4.0e-32	79.59	Ribosomal protein L37ae (Fragment) OS=Cynara cardunculus var. scolymus GN=Ccrd_0...	[more]
D7TTK2_VITVI	5.2e-32	71.43	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0012g00100 PE=3 SV=...	[more]
A0A0D2Q049_GOSRA	8.9e-32	79.38	Uncharacterized protein OS=Gossypium raimondii GN=B456_008G230300 PE=3 SV=1	[more]

BLAST of CmoCh19G003960 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G10950.1	1.1e-33	75.26	Zinc-binding ribosomal protein family protein	[more]
AT3G60245.1	5.5e-33	75.00	Zinc-binding ribosomal protein family protein	[more]

BLAST of CmoCh19G003960 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|976900409\|gb\|KVH88611.1\|	3.0e-33	81.44	hypothetical protein Ccrd_026305 [Cynara cardunculus var. scolymus]	[more]
gi\|976910465\|gb\|KVH97157.1\|	5.7e-32	79.59	Ribosomal protein L37ae, partial [Cynara cardunculus var. scolymus]	[more]
gi\|297742195\|emb\|CBI33982.3\|	7.5e-32	71.43	unnamed protein product [Vitis vinifera]	[more]
gi\|641866750\|gb\|KDO85434.1\|	1.3e-31	79.38	hypothetical protein CISIN_1g045338mg [Citrus sinensis]	[more]
gi\|413968440\|gb\|AFW90557.1\|	1.3e-31	79.38	60S ribosomal protein L37a [Solanum tuberosum]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002674	Ribosomal_L37ae
IPR011331	Ribosomal_L37ae/L37e
IPR011332	Ribosomal_zn-bd

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh19G003960.1	CmoCh19G003960.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002674	Ribosomal protein L37ae	PFAM	PF01780	Ribosomal_L37ae	coord: 63..92 score: 7.7E-11coord: 113..155 score: 5.4
IPR011331	Ribosomal protein L37ae/L37e	GENE3D	G3DSA:2.20.25.30		coord: 112..158 score: 1.5E-19coord: 63..92 score: 5.1
IPR011332	Zinc-binding ribosomal protein	unknown	SSF57829	Zn-binding ribosomal proteins	coord: 63..92 score: 8.55E-9coord: 112..149 score: 1.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh19G003960	Cucsa.313680	Cucumber (Gy14) v1	cgycmoB0867
CmoCh19G003960	CmaCh19G003880	Cucurbita maxima (Rimu)	cmacmoB508
CmoCh19G003960	Cla016113	Watermelon (97103) v1	cmowmB465
CmoCh19G003960	MELO3C003342	Melon (DHL92) v3.5.1	cmomeB463
CmoCh19G003960	ClCG09G012610	Watermelon (Charleston Gray)	cmowcgB439
CmoCh19G003960	CSPI03G47330	Wild cucumber (PI 183967)	cmocpiB508
CmoCh19G003960	Lsi05G000320	Bottle gourd (USVL1VR-Ls)	cmolsiB475
CmoCh19G003960	Cp4.1LG15g02940	Cucurbita pepo (Zucchini)	cmocpeB481
CmoCh19G003960	MELO3C003342.2	Melon (DHL92) v3.6.1	cmomedB534
CmoCh19G003960	Cla97C09G175420	Watermelon (97103) v2	cmowmbB530
CmoCh19G003960	Bhi05G000399	Wax gourd	cmowgoB0645
CmoCh19G003960	Carg25075	Silver-seed gourd	carcmoB0300

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh19G003960	Silver-seed gourd	carcmoB1056
CmoCh19G003960	Cucumber (Chinese Long) v3	cmocucB0600
CmoCh19G003960	Cucumber (Chinese Long) v3	cmocucB0610
CmoCh19G003960	Wax gourd	cmowgoB0649
CmoCh19G003960	Cucurbita moschata (Rifu)	cmocmoB391
CmoCh19G003960	Cucumber (Gy14) v1	cgycmoB0869
CmoCh19G003960	Cucurbita maxima (Rimu)	cmacmoB602
CmoCh19G003960	Wild cucumber (PI 183967)	cmocpiB514
CmoCh19G003960	Cucumber (Chinese Long) v2	cmocuB502
CmoCh19G003960	Cucumber (Chinese Long) v2	cmocuB508
CmoCh19G003960	Melon (DHL92) v3.5.1	cmomeB460
CmoCh19G003960	Watermelon (97103) v1	cmowmB477
CmoCh19G003960	Cucurbita pepo (Zucchini)	cmocpeB501
CmoCh19G003960	Cucumber (Gy14) v2	cgybcmoB350
CmoCh19G003960	Melon (DHL92) v3.6.1	cmomedB531