Carg25075 (gene) Silver-seed gourd

NameCarg25075
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Description60S ribosomal protein L37a
LocationCucurbita_argyrosperma_scaffold_072 : 1700 .. 2104 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGTCAGTCAGCACAGCAAATACTTTTGTGAGTTCTGTGGAAAGGCAAGTAGTTGTGCTCCTTTTTTGCCCAAGTTTTTCATTTCCAAGTCACTTAGTCTTCATGTTCCAGTTATATGCTTCCCCCATTGCAGTATGCAGTTAAGAGGAAGGCAGTTGGAATTTGGGGCTGCAAAGATTGTGGTAAAGTGAAGGCCGGAGGTGCCTACACTCTTAAGTAAGGATCTTACTTCTTTTTGTTCTTTTGTTTATTCCTTTTTTTTTTTTTTTCTTTTCCTTTTCAGTTTTTGTTGTTTAAATGTATTTGATTTTAATGTTATTTTTGGTACCTTTGACAGCACTGCTAGTGCTGTGACAGTGAGGAGCACTATTAGGAGGCTGAGAGAGCAAACTGAAAGCTAA

mRNA sequence

ATGGAAGTCAGTCAGCACAGCAAATACTTTTGTGAGTTCTGTGGAAAGGCAATTAAGAGGAAGGCAGTTGGAATTTGGGGCTGCAAAGATTGTGGTAAAGTGAAGGCCGGAGGTGCCTACACTCTTAATTTTTGTTGTTTAAATGTATTTGATTTTAATGTTATTTTTGGTACCTTTGACAGCACTGCTAGTGCTGTGACAGTGAGGAGCACTATTAGGAGGCTGAGAGAGCAAACTGAAAGCTAA

Coding sequence (CDS)

ATGGAAGTCAGTCAGCACAGCAAATACTTTTGTGAGTTCTGTGGAAAGGCAATTAAGAGGAAGGCAGTTGGAATTTGGGGCTGCAAAGATTGTGGTAAAGTGAAGGCCGGAGGTGCCTACACTCTTAATTTTTGTTGTTTAAATGTATTTGATTTTAATGTTATTTTTGGTACCTTTGACAGCACTGCTAGTGCTGTGACAGTGAGGAGCACTATTAGGAGGCTGAGAGAGCAAACTGAAAGCTAA

Protein sequence

MEVSQHSKYFCEFCGKAIKRKAVGIWGCKDCGKVKAGGAYTLNFCCLNVFDFNVIFGTFDSTASAVTVRSTIRRLREQTES
BLAST of Carg25075 vs. NCBI nr
Match: AFW90557.1 (60S ribosomal protein L37a [Solanum tuberosum])

HSP 1 Score: 115.9 bits (289), Expect = 6.3e-23
Identity = 62/82 (75.61%), Postives = 63/82 (76.83%), Query Frame = 0

Query: 1  MEVSQHSKYFCEFCGK-AIKRKAVGIWGCKDCGKVKAGGAYTLNFCCLNVFDFNVIFGTF 60
          MEVSQHSKYFCEFCGK A+KRKAVGIWGCKDCGKVKAGGAYTLN                
Sbjct: 29 MEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLN---------------- 88

Query: 61 DSTASAVTVRSTIRRLREQTES 82
            TASAVTVRSTIRRLREQTES
Sbjct: 89 --TASAVTVRSTIRRLREQTES 92

BLAST of Carg25075 vs. NCBI nr
Match: ESR58705.1 (hypothetical protein CICLE_v10022898mg [Citrus clementina] >GAY57871.1 hypothetical protein CUMW_182790 [Citrus unshiu])

HSP 1 Score: 115.9 bits (289), Expect = 6.3e-23
Identity = 62/82 (75.61%), Postives = 63/82 (76.83%), Query Frame = 0

Query: 1   MEVSQHSKYFCEFCGK-AIKRKAVGIWGCKDCGKVKAGGAYTLNFCCLNVFDFNVIFGTF 60
           MEVSQHSKYFCEFCGK A+KRKAVGIWGCKDCGKVKAGGAYTLN                
Sbjct: 58  MEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLN---------------- 117

Query: 61  DSTASAVTVRSTIRRLREQTES 82
             TASAVTVRSTIRRLREQTES
Sbjct: 118 --TASAVTVRSTIRRLREQTES 121

BLAST of Carg25075 vs. NCBI nr
Match: EYU42327.1 (hypothetical protein MIMGU_mgv1a0171311mg, partial [Erythranthe guttata])

HSP 1 Score: 115.9 bits (289), Expect = 6.3e-23
Identity = 62/82 (75.61%), Postives = 63/82 (76.83%), Query Frame = 0

Query: 1  MEVSQHSKYFCEFCGK-AIKRKAVGIWGCKDCGKVKAGGAYTLNFCCLNVFDFNVIFGTF 60
          MEVSQHSKYFCEFCGK A+KRKAVGIWGCKDCGKVKAGGAYTLN                
Sbjct: 28 MEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLN---------------- 87

Query: 61 DSTASAVTVRSTIRRLREQTES 82
            TASAVTVRSTIRRLREQTES
Sbjct: 88 --TASAVTVRSTIRRLREQTES 91

BLAST of Carg25075 vs. NCBI nr
Match: EYU42328.1 (hypothetical protein MIMGU_mgv1a0171311mg, partial [Erythranthe guttata])

HSP 1 Score: 115.9 bits (289), Expect = 6.3e-23
Identity = 62/82 (75.61%), Postives = 63/82 (76.83%), Query Frame = 0

Query: 1  MEVSQHSKYFCEFCGK-AIKRKAVGIWGCKDCGKVKAGGAYTLNFCCLNVFDFNVIFGTF 60
          MEVSQHSKYFCEFCGK A+KRKAVGIWGCKDCGKVKAGGAYTLN                
Sbjct: 14 MEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLN---------------- 73

Query: 61 DSTASAVTVRSTIRRLREQTES 82
            TASAVTVRSTIRRLREQTES
Sbjct: 74 --TASAVTVRSTIRRLREQTES 77

BLAST of Carg25075 vs. NCBI nr
Match: CBI33982.3 (unnamed protein product, partial [Vitis vinifera])

HSP 1 Score: 115.9 bits (289), Expect = 6.3e-23
Identity = 62/82 (75.61%), Postives = 63/82 (76.83%), Query Frame = 0

Query: 1  MEVSQHSKYFCEFCGK-AIKRKAVGIWGCKDCGKVKAGGAYTLNFCCLNVFDFNVIFGTF 60
          MEVSQHSKYFCEFCGK A+KRKAVGIWGCKDCGKVKAGGAYTLN                
Sbjct: 36 MEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLN---------------- 95

Query: 61 DSTASAVTVRSTIRRLREQTES 82
            TASAVTVRSTIRRLREQTES
Sbjct: 96 --TASAVTVRSTIRRLREQTES 99

BLAST of Carg25075 vs. TAIR10
Match: AT3G10950.1 (Zinc-binding ribosomal protein family protein)

HSP 1 Score: 111.3 bits (277), Expect = 2.8e-25
Identity = 58/82 (70.73%), Postives = 62/82 (75.61%), Query Frame = 0

Query: 1  MEVSQHSKYFCEFCGK-AIKRKAVGIWGCKDCGKVKAGGAYTLNFCCLNVFDFNVIFGTF 60
          MEVSQH+KYFCEFCGK ++KRK VGIWGCKDCGKVKAGGAYT+N                
Sbjct: 29 MEVSQHNKYFCEFCGKYSVKRKVVGIWGCKDCGKVKAGGAYTMN---------------- 88

Query: 61 DSTASAVTVRSTIRRLREQTES 82
            TASAVTVRSTIRRLREQTES
Sbjct: 89 --TASAVTVRSTIRRLREQTES 92

BLAST of Carg25075 vs. TAIR10
Match: AT3G60245.1 (Zinc-binding ribosomal protein family protein)

HSP 1 Score: 109.8 bits (273), Expect = 8.1e-25
Identity = 58/81 (71.60%), Postives = 60/81 (74.07%), Query Frame = 0

Query: 1  MEVSQHSKYFCEFCGK-AIKRKAVGIWGCKDCGKVKAGGAYTLNFCCLNVFDFNVIFGTF 60
          MEVSQHSKYFCEFCGK  +KRKAVGIWGCKDCGKVKAGGAYT+N                
Sbjct: 29 MEVSQHSKYFCEFCGKYGVKRKAVGIWGCKDCGKVKAGGAYTMN---------------- 88

Query: 61 DSTASAVTVRSTIRRLREQTE 81
            TASAVTVRSTIRRLREQ E
Sbjct: 89 --TASAVTVRSTIRRLREQIE 91

BLAST of Carg25075 vs. Swiss-Prot
Match: sp|P0DKK1|RL371_ORYSJ (60S ribosomal protein L37a-1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0679700 PE=1 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 7.8e-25
Identity = 60/82 (73.17%), Postives = 63/82 (76.83%), Query Frame = 0

Query: 1  MEVSQHSKYFCEFCGK-AIKRKAVGIWGCKDCGKVKAGGAYTLNFCCLNVFDFNVIFGTF 60
          MEVSQHSKYFCEFCGK A+KRKAVGIWGCKDCGKVKAGGAYT+N                
Sbjct: 29 MEVSQHSKYFCEFCGKFAVKRKAVGIWGCKDCGKVKAGGAYTMN---------------- 88

Query: 61 DSTASAVTVRSTIRRLREQTES 82
            TASAVTVRSTIRRLREQTE+
Sbjct: 89 --TASAVTVRSTIRRLREQTEA 92

BLAST of Carg25075 vs. Swiss-Prot
Match: sp|P0DKK2|RL372_ORYSJ (60S ribosomal protein L37a-2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0557000 PE=1 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 7.8e-25
Identity = 60/82 (73.17%), Postives = 63/82 (76.83%), Query Frame = 0

Query: 1  MEVSQHSKYFCEFCGK-AIKRKAVGIWGCKDCGKVKAGGAYTLNFCCLNVFDFNVIFGTF 60
          MEVSQHSKYFCEFCGK A+KRKAVGIWGCKDCGKVKAGGAYT+N                
Sbjct: 29 MEVSQHSKYFCEFCGKFAVKRKAVGIWGCKDCGKVKAGGAYTMN---------------- 88

Query: 61 DSTASAVTVRSTIRRLREQTES 82
            TASAVTVRSTIRRLREQTE+
Sbjct: 89 --TASAVTVRSTIRRLREQTEA 92

BLAST of Carg25075 vs. Swiss-Prot
Match: sp|Q9XHE4|RL37A_GOSHI (60S ribosomal protein L37a OS=Gossypium hirsutum OX=3635 GN=RPL37A PE=3 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 1.7e-24
Identity = 61/82 (74.39%), Postives = 62/82 (75.61%), Query Frame = 0

Query: 1  MEVSQHSKYFCEFCGK-AIKRKAVGIWGCKDCGKVKAGGAYTLNFCCLNVFDFNVIFGTF 60
          MEVSQHSKYFCEFCGK A+KRKAVGIWGCK CGKVKAGGAYTLN                
Sbjct: 29 MEVSQHSKYFCEFCGKYAVKRKAVGIWGCKACGKVKAGGAYTLN---------------- 88

Query: 61 DSTASAVTVRSTIRRLREQTES 82
            TASAVTVRSTIRRLREQTES
Sbjct: 89 --TASAVTVRSTIRRLREQTES 92

BLAST of Carg25075 vs. Swiss-Prot
Match: sp|Q9SRK6|R37A1_ARATH (Putative 60S ribosomal protein L37a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL37AB PE=3 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 5.0e-24
Identity = 58/82 (70.73%), Postives = 62/82 (75.61%), Query Frame = 0

Query: 1  MEVSQHSKYFCEFCGK-AIKRKAVGIWGCKDCGKVKAGGAYTLNFCCLNVFDFNVIFGTF 60
          MEVSQH+KYFCEFCGK ++KRK VGIWGCKDCGKVKAGGAYT+N                
Sbjct: 29 MEVSQHNKYFCEFCGKYSVKRKVVGIWGCKDCGKVKAGGAYTMN---------------- 88

Query: 61 DSTASAVTVRSTIRRLREQTES 82
            TASAVTVRSTIRRLREQTES
Sbjct: 89 --TASAVTVRSTIRRLREQTES 92

BLAST of Carg25075 vs. Swiss-Prot
Match: sp|Q9ZRS8|RL37A_PSEMZ (60S ribosomal protein L37a OS=Pseudotsuga menziesii OX=3357 GN=RPL37A PE=3 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 6.6e-24
Identity = 59/81 (72.84%), Postives = 61/81 (75.31%), Query Frame = 0

Query: 1  MEVSQHSKYFCEFCGK-AIKRKAVGIWGCKDCGKVKAGGAYTLNFCCLNVFDFNVIFGTF 60
          MEVSQHSK+FCEFCGK A+KRKAVGIWGCKDCGKVKAGGAYTLN                
Sbjct: 29 MEVSQHSKFFCEFCGKFAVKRKAVGIWGCKDCGKVKAGGAYTLN---------------- 88

Query: 61 DSTASAVTVRSTIRRLREQTE 81
            T SAVTVRSTIRRLREQTE
Sbjct: 89 --TPSAVTVRSTIRRLREQTE 91

BLAST of Carg25075 vs. TrEMBL
Match: tr|A0A2P5FZA6|A0A2P5FZA6_9ROSA (Ribosomal protein OS=Trema orientalis OX=63057 GN=TorRG33x02_011680 PE=3 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 4.1e-23
Identity = 62/82 (75.61%), Postives = 63/82 (76.83%), Query Frame = 0

Query: 1  MEVSQHSKYFCEFCGK-AIKRKAVGIWGCKDCGKVKAGGAYTLNFCCLNVFDFNVIFGTF 60
          MEVSQHSKYFCEFCGK A+KRKAVGIWGCKDCGKVKAGGAYTLN                
Sbjct: 29 MEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLN---------------- 88

Query: 61 DSTASAVTVRSTIRRLREQTES 82
            TASAVTVRSTIRRLREQTES
Sbjct: 89 --TASAVTVRSTIRRLREQTES 92

BLAST of Carg25075 vs. TrEMBL
Match: tr|A0A1S3X5Y9|A0A1S3X5Y9_TOBAC (60S ribosomal protein L37a OS=Nicotiana tabacum OX=4097 GN=LOC107761416 PE=3 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 4.1e-23
Identity = 62/82 (75.61%), Postives = 63/82 (76.83%), Query Frame = 0

Query: 1  MEVSQHSKYFCEFCGK-AIKRKAVGIWGCKDCGKVKAGGAYTLNFCCLNVFDFNVIFGTF 60
          MEVSQHSKYFCEFCGK A+KRKAVGIWGCKDCGKVKAGGAYTLN                
Sbjct: 29 MEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLN---------------- 88

Query: 61 DSTASAVTVRSTIRRLREQTES 82
            TASAVTVRSTIRRLREQTES
Sbjct: 89 --TASAVTVRSTIRRLREQTES 92

BLAST of Carg25075 vs. TrEMBL
Match: tr|A0A1U8EAT3|A0A1U8EAT3_CAPAN (60S ribosomal protein L37a OS=Capsicum annuum OX=4072 GN=LOC107844440 PE=3 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 4.1e-23
Identity = 62/82 (75.61%), Postives = 63/82 (76.83%), Query Frame = 0

Query: 1  MEVSQHSKYFCEFCGK-AIKRKAVGIWGCKDCGKVKAGGAYTLNFCCLNVFDFNVIFGTF 60
          MEVSQHSKYFCEFCGK A+KRKAVGIWGCKDCGKVKAGGAYTLN                
Sbjct: 29 MEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLN---------------- 88

Query: 61 DSTASAVTVRSTIRRLREQTES 82
            TASAVTVRSTIRRLREQTES
Sbjct: 89 --TASAVTVRSTIRRLREQTES 92

BLAST of Carg25075 vs. TrEMBL
Match: tr|A0A1R3HID5|A0A1R3HID5_COCAP (Ribosomal protein L37ae OS=Corchorus capsularis OX=210143 GN=CCACVL1_19104 PE=3 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 4.1e-23
Identity = 62/82 (75.61%), Postives = 63/82 (76.83%), Query Frame = 0

Query: 1  MEVSQHSKYFCEFCGK-AIKRKAVGIWGCKDCGKVKAGGAYTLNFCCLNVFDFNVIFGTF 60
          MEVSQHSKYFCEFCGK A+KRKAVGIWGCKDCGKVKAGGAYTLN                
Sbjct: 29 MEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLN---------------- 88

Query: 61 DSTASAVTVRSTIRRLREQTES 82
            TASAVTVRSTIRRLREQTES
Sbjct: 89 --TASAVTVRSTIRRLREQTES 92

BLAST of Carg25075 vs. TrEMBL
Match: tr|M0ZN48|M0ZN48_SOLTU (Uncharacterized protein OS=Solanum tuberosum OX=4113 GN=102588076 PE=3 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 4.1e-23
Identity = 62/82 (75.61%), Postives = 63/82 (76.83%), Query Frame = 0

Query: 1  MEVSQHSKYFCEFCGK-AIKRKAVGIWGCKDCGKVKAGGAYTLNFCCLNVFDFNVIFGTF 60
          MEVSQHSKYFCEFCGK A+KRKAVGIWGCKDCGKVKAGGAYTLN                
Sbjct: 29 MEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLN---------------- 88

Query: 61 DSTASAVTVRSTIRRLREQTES 82
            TASAVTVRSTIRRLREQTES
Sbjct: 89 --TASAVTVRSTIRRLREQTES 92

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
AFW90557.16.3e-2375.6160S ribosomal protein L37a [Solanum tuberosum][more]
ESR58705.16.3e-2375.61hypothetical protein CICLE_v10022898mg [Citrus clementina] >GAY57871.1 hypotheti... [more]
EYU42327.16.3e-2375.61hypothetical protein MIMGU_mgv1a0171311mg, partial [Erythranthe guttata][more]
EYU42328.16.3e-2375.61hypothetical protein MIMGU_mgv1a0171311mg, partial [Erythranthe guttata][more]
CBI33982.36.3e-2375.61unnamed protein product, partial [Vitis vinifera][more]
Match NameE-valueIdentityDescription
AT3G10950.12.8e-2570.73Zinc-binding ribosomal protein family protein[more]
AT3G60245.18.1e-2571.60Zinc-binding ribosomal protein family protein[more]
Match NameE-valueIdentityDescription
sp|P0DKK1|RL371_ORYSJ7.8e-2573.1760S ribosomal protein L37a-1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g06... [more]
sp|P0DKK2|RL372_ORYSJ7.8e-2573.1760S ribosomal protein L37a-2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g05... [more]
sp|Q9XHE4|RL37A_GOSHI1.7e-2474.3960S ribosomal protein L37a OS=Gossypium hirsutum OX=3635 GN=RPL37A PE=3 SV=1[more]
sp|Q9SRK6|R37A1_ARATH5.0e-2470.73Putative 60S ribosomal protein L37a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL37AB... [more]
sp|Q9ZRS8|RL37A_PSEMZ6.6e-2472.8460S ribosomal protein L37a OS=Pseudotsuga menziesii OX=3357 GN=RPL37A PE=3 SV=1[more]
Match NameE-valueIdentityDescription
tr|A0A2P5FZA6|A0A2P5FZA6_9ROSA4.1e-2375.61Ribosomal protein OS=Trema orientalis OX=63057 GN=TorRG33x02_011680 PE=3 SV=1[more]
tr|A0A1S3X5Y9|A0A1S3X5Y9_TOBAC4.1e-2375.6160S ribosomal protein L37a OS=Nicotiana tabacum OX=4097 GN=LOC107761416 PE=3 SV=... [more]
tr|A0A1U8EAT3|A0A1U8EAT3_CAPAN4.1e-2375.6160S ribosomal protein L37a OS=Capsicum annuum OX=4072 GN=LOC107844440 PE=3 SV=1[more]
tr|A0A1R3HID5|A0A1R3HID5_COCAP4.1e-2375.61Ribosomal protein L37ae OS=Corchorus capsularis OX=210143 GN=CCACVL1_19104 PE=3 ... [more]
tr|M0ZN48|M0ZN48_SOLTU4.1e-2375.61Uncharacterized protein OS=Solanum tuberosum OX=4113 GN=102588076 PE=3 SV=1[more]
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR011332Ribosomal_zn-bd
IPR011331Ribosomal_L37ae/L37e
IPR002674Ribosomal_L37ae
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0003735 structural constituent of ribosome

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg25075-RACarg25075-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002674Ribosomal protein L37aePFAMPF01780Ribosomal_L37aecoord: 1..77
e-value: 3.4E-20
score: 71.8
IPR002674Ribosomal protein L37aePANTHERPTHR43931FAMILY NOT NAMEDcoord: 1..43
IPR011331Ribosomal protein L37ae/L37eGENE3DG3DSA:2.20.25.30coord: 1..81
e-value: 1.9E-28
score: 100.4
IPR011332Zinc-binding ribosomal proteinSUPERFAMILYSSF57829Zn-binding ribosomal proteinscoord: 1..43