Cucsa.313450 (gene) Cucumber (Gy14) v1

NameCucsa.313450
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionTobamovirus multiplication protein 2B
Locationscaffold02995 : 2623217 .. 2626182 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GAAGCTTCAGGCGACGCCAACAATGGCGACAGCTTCCCCATCAGGTCGAAGCAACAGGGATGGAACAGCAAAAGCCATGGTTGCCGACCACATTTCTCAGTCTGTACGATCCACGTCAAATCTCCTTCATCTAATGCAGCAATCGTCTTCAGCTCAGGCATCCTCTCTCTCTCTCTCTCGTTTGTGTTTTCTGAAGCTTCACGAGTTCATTCGAACGGTTTGATGATGATCTTGATCATATGAATAGATGATTGAATTTCCAAATCTTAATTGTTCGTTTTGTATCTTTTTCCATTTTCTAGCTTCAGTTAATTGAGAAATCACGTTATGTTTCGAGGAAAATTGTGTAATATTGTACGAACTTTGACTGTGCTTGAATTGTTTGCATCGAAGTCATAATTTCAAGTTTTCACTACCTTGGACAATTGAAGTGAAAGTTACCTCTGATTTTTAGATGGATTCAACTCTTGGAAGTTTTAGTCATATTGCTGAAGTGCTATTTTGTTTGAGATTTTTTGTTATTGCATTGCTTTCAGATTTTCGGTTCTGTCTTGTCTGCAGGCTCAGTTAACAAAGTTGCCAAAGAATCTTTTGGCGAAAGCATCTACTATGAAAAATACTGGGAAAGTATGTAGCATCAGTTAATAACTTCAGCATGTTCTTCTTTCGTTTATTTATTTCTTATCAATAAGACTTCTGATAGTACTTTCACTTCTGTTCTTGTGATGCAGATCTTAGAGCAGATGCCGCAAGTGGTTTCATCATTAGATGCATATGTTGAGAAGGGACTAGAAAGGTTCCTTTTTTACCTTGAACATGCATTGGTGGAATTAGTTCTATTTCTATGTTCAAATGTATAAAGCACATGGGTTATTTCTTTGGTGAAGAAACCAATGATTTTCGTTAGATTTGATGACAGTTATTGAAGTGCATAAGTAAATGCTTTGTTTTCCAGTGATATATTTATATTAAAGAACTTTCATGTTGAAATTGATACGTCTGAGACGGGAGGGGAGGCTT

mRNA sequence

GAAGCTTCAGGCGACGCCAACAATGGCGACAGCTTCCCCATCAGGTCGAAGCAACAGGGATGGAACAGCAAAAGCCATGGTTGCCGACCACATTTCTCAGTCTGTACGATCCACGTCAAATCTCCTTCATCTAATGCAGCAATCGTCTTCAGCTCAGGCTCAGTTAACAAAGTTGCCAAAGAATCTTTTGGCGAAAGCATCTACTATGAAAAATACTGGGAAAATCTTAGAGCAGATGCCGCAAGTGGTTTCATCATTAGATGCATATGTTGAGAAGGGACTAGAAAGGTTCCTTTTTTACCTTGAACATGCATTGGTGGAATTAGTTCTATTTCTATGTTCAAATGTATAAAGCACATGGGTTATTTCTTTGGTGAAGAAACCAATGATTTTCGTTAGATTTGATGACAGTTATTGAAGTGCATAAGTAAATGCTTTGTTTTCCAGTGATATATTTATATTAAAGAACTTTCATGTTgaaattgatacgtctgagacgggaggggaggctt

Coding sequence (CDS)

ATGGCGACAGCTTCCCCATCAGGTCGAAGCAACAGGGATGGAACAGCAAAAGCCATGGTTGCCGACCACATTTCTCAGTCTGTACGATCCACGTCAAATCTCCTTCATCTAATGCAGCAATCGTCTTCAGCTCAGGCTCAGTTAACAAAGTTGCCAAAGAATCTTTTGGCGAAAGCATCTACTATGAAAAATACTGGGAAAATCTTAGAGCAGATGCCGCAAGTGGTTTCATCATTAGATGCATATGTTGAGAAGGGACTAGAAAGGTTCCTTTTTTACCTTGAACATGCATTGGTGGAATTAGTTCTATTTCTATGTTCAAATGTATAA

Protein sequence

MATASPSGRSNRDGTAKAMVADHISQSVRSTSNLLHLMQQSSSAQAQLTKLPKNLLAKASTMKNTGKILEQMPQVVSSLDAYVEKGLERFLFYLEHALVELVLFLCSNV*
BLAST of Cucsa.313450 vs. Swiss-Prot
Match: TOM2B_ARATH (Tobamovirus multiplication protein 2B OS=Arabidopsis thaliana GN=TOM2B PE=2 SV=2)

HSP 1 Score: 138.7 bits (348), Expect = 4.7e-32
Identity = 77/115 (66.96%), Postives = 91/115 (79.13%), Query Frame = 1

Query: 1   MATASPSGR--SNRDGTAKAMVADHISQSVRSTSNLLHLMQQSSSAQAQLTKLPKNLLAK 60
           MATAS + R  S  D TAKA+VAD ISQ+V ST+NLLHLM+QSSS+QAQL KLPKNLLAK
Sbjct: 1   MATASENSRGISGGDRTAKAVVADQISQAVNSTANLLHLMRQSSSSQAQLAKLPKNLLAK 60

Query: 61  ASTMKNTGKILEQMPQVVSSLDAYVEKGLESIPRLQTVVQLLTNMESSQLKSLSQ 114
           AS  K TG+ L Q+PQV+SSLDA++E GL S   L TV QLL NMES+QL++L Q
Sbjct: 61  ASLTKATGQALAQLPQVISSLDAHIESGLHSGVHLNTVTQLLENMESTQLRALRQ 115

BLAST of Cucsa.313450 vs. TrEMBL
Match: A0A0A0LI80_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G904110 PE=4 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 1.2e-63
Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 1

Query: 1   MATASPSGRSNRDGTAKAMVADHISQSVRSTSNLLHLMQQSSSAQAQLTKLPKNLLAKAS 60
           MATASPSGRSNRDGTAKAMVADHISQSVRSTSNLLHLMQQSSSAQAQLTKLPKNLLAKAS
Sbjct: 1   MATASPSGRSNRDGTAKAMVADHISQSVRSTSNLLHLMQQSSSAQAQLTKLPKNLLAKAS 60

Query: 61  TMKNTGKILEQMPQVVSSLDAYVEKGLESIPRLQTVVQLLTNMESSQLKSLSQFQHPQEE 120
           TMKNTGKILEQMPQVVSSLDAYVEKGLESIPRLQTVVQLLTNMESSQLKSLSQFQHPQEE
Sbjct: 61  TMKNTGKILEQMPQVVSSLDAYVEKGLESIPRLQTVVQLLTNMESSQLKSLSQFQHPQEE 120

Query: 121 SESLPQPKDVD 132
           SESLPQPKDVD
Sbjct: 121 SESLPQPKDVD 131

BLAST of Cucsa.313450 vs. TrEMBL
Match: V4VCD3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033051mg PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 2.0e-37
Identity = 86/126 (68.25%), Postives = 104/126 (82.54%), Query Frame = 1

Query: 3   TASPSGRSN-RDGTAKAMVADHISQSVRSTSNLLHLMQQSSSAQAQLTKLPKNLLAKAST 62
           TA+ SG S+ R+GTAKAMV D ISQ+++STSNLLHLMQQSS +Q QLTKLPKNLLAK + 
Sbjct: 5   TAAASGSSSSREGTAKAMVFDQISQTIQSTSNLLHLMQQSSPSQVQLTKLPKNLLAKTTM 64

Query: 63  MKNTGKILEQMPQVVSSLDAYVEKGLESIPRLQTVVQLLTNMESSQLKSLSQFQHPQEES 122
           +KNTG++LEQMPQV+SSLDA+VE GL+S+P L+TV QLL NMES QL SLSQ   P++E 
Sbjct: 65  IKNTGQVLEQMPQVISSLDAHVENGLQSVPHLRTVSQLLANMESCQLSSLSQAHLPEKEP 124

Query: 123 ESLPQP 128
           E   QP
Sbjct: 125 EMGKQP 130

BLAST of Cucsa.313450 vs. TrEMBL
Match: U5GN76_POPTR (Tobamovirus multiplication protein 2B OS=Populus trichocarpa GN=POPTR_0001s02840g PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 4.5e-37
Identity = 81/128 (63.28%), Postives = 106/128 (82.81%), Query Frame = 1

Query: 2   ATASPSGRSNRDGTAKAMVADHISQSVRSTSNLLHLMQQSSSAQAQLTKLPKNLLAKAST 61
           + +S    S R+GTAK++VAD ISQ+V+STSNLLHLMQQSS +QA+L KLPKNLLAKAST
Sbjct: 18  SASSGGSASAREGTAKSVVADQISQAVQSTSNLLHLMQQSSPSQAKLMKLPKNLLAKAST 77

Query: 62  MKNTGKILEQMPQVVSSLDAYVEKGLESIPRLQTVVQLLTNMESSQLKSLSQFQHPQEES 121
           +KNTG++L+QMP+V+SSLDA+++ GL+S+P L+T +QLL NMES QL +LSQ Q  Q+ES
Sbjct: 78  IKNTGQVLDQMPKVISSLDAHMDSGLQSVPHLRTAIQLLANMESCQLNTLSQAQFSQQES 137

Query: 122 ESLPQPKD 130
           E   QP +
Sbjct: 138 EPSSQPPE 145

BLAST of Cucsa.313450 vs. TrEMBL
Match: A0A0K9RR13_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_038950 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 8.4e-36
Identity = 83/122 (68.03%), Postives = 98/122 (80.33%), Query Frame = 1

Query: 1   MATASPSGRSNRDGTAKAMVADHISQSVRSTSNLLHLMQQSSSAQAQLTKLPKNLLAKAS 60
           MAT    GRS R+ TAK  VAD ISQS++STSNLL LMQQSS +QA L KLPKNLLAK  
Sbjct: 1   MATVGGRGRSTRESTAKTAVADQISQSIQSTSNLLQLMQQSSPSQAHLAKLPKNLLAKTD 60

Query: 61  TMKNTGKILEQMPQVVSSLDAYVEKGLESIPRLQTVVQLLTNMESSQLKSLSQFQHPQEE 120
           T+KNTG++L+Q+P V+SSLDAY+E GL SIP L+TV QLLTNMESSQLKS SQ  +P E+
Sbjct: 61  TIKNTGQVLQQLPLVISSLDAYMENGLHSIPHLKTVTQLLTNMESSQLKSSSQ-PNPSEQ 120

Query: 121 SE 123
           S+
Sbjct: 121 SQ 121

BLAST of Cucsa.313450 vs. TrEMBL
Match: M5WB21_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013291mg PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 7.1e-35
Identity = 81/124 (65.32%), Postives = 101/124 (81.45%), Query Frame = 1

Query: 4   ASPSGRSNRDGTAKAMVADHISQSVRSTSNLLHLMQQSSSAQAQLTKLPKNLLAKASTMK 63
           +S +G S+R  TAKA+V+D ISQ++ STSNLLHLMQQSS +QAQL +LPKNLL K ST+K
Sbjct: 3   SSTAGGSSRGNTAKALVSDQISQAILSTSNLLHLMQQSSPSQAQLIRLPKNLLVKTSTIK 62

Query: 64  NTGKILEQMPQVVSSLDAYVEKGLESIPRLQTVVQLLTNMESSQLKSLSQFQHPQEESES 123
           +TG++LEQMP+VVSSLDA++E GL+S+P LQTV+QLL NMES QL SLSQ +   EE E 
Sbjct: 63  HTGQLLEQMPRVVSSLDAHMESGLQSVPHLQTVIQLLENMESCQLSSLSQAKVLPEEHEV 122

Query: 124 LPQP 128
             QP
Sbjct: 123 ENQP 126

BLAST of Cucsa.313450 vs. TAIR10
Match: AT1G32370.2 (AT1G32370.2 tobamovirus multiplication 2B)

HSP 1 Score: 138.7 bits (348), Expect = 2.7e-33
Identity = 77/115 (66.96%), Postives = 91/115 (79.13%), Query Frame = 1

Query: 1   MATASPSGR--SNRDGTAKAMVADHISQSVRSTSNLLHLMQQSSSAQAQLTKLPKNLLAK 60
           MATAS + R  S  D TAKA+VAD ISQ+V ST+NLLHLM+QSSS+QAQL KLPKNLLAK
Sbjct: 1   MATASENSRGISGGDRTAKAVVADQISQAVNSTANLLHLMRQSSSSQAQLAKLPKNLLAK 60

Query: 61  ASTMKNTGKILEQMPQVVSSLDAYVEKGLESIPRLQTVVQLLTNMESSQLKSLSQ 114
           AS  K TG+ L Q+PQV+SSLDA++E GL S   L TV QLL NMES+QL++L Q
Sbjct: 61  ASLTKATGQALAQLPQVISSLDAHIESGLHSGVHLNTVTQLLENMESTQLRALRQ 115

BLAST of Cucsa.313450 vs. NCBI nr
Match: gi|778688029|ref|XP_011652663.1| (PREDICTED: tobamovirus multiplication protein 2B [Cucumis sativus])

HSP 1 Score: 250.4 bits (638), Expect = 1.8e-63
Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 1

Query: 1   MATASPSGRSNRDGTAKAMVADHISQSVRSTSNLLHLMQQSSSAQAQLTKLPKNLLAKAS 60
           MATASPSGRSNRDGTAKAMVADHISQSVRSTSNLLHLMQQSSSAQAQLTKLPKNLLAKAS
Sbjct: 1   MATASPSGRSNRDGTAKAMVADHISQSVRSTSNLLHLMQQSSSAQAQLTKLPKNLLAKAS 60

Query: 61  TMKNTGKILEQMPQVVSSLDAYVEKGLESIPRLQTVVQLLTNMESSQLKSLSQFQHPQEE 120
           TMKNTGKILEQMPQVVSSLDAYVEKGLESIPRLQTVVQLLTNMESSQLKSLSQFQHPQEE
Sbjct: 61  TMKNTGKILEQMPQVVSSLDAYVEKGLESIPRLQTVVQLLTNMESSQLKSLSQFQHPQEE 120

Query: 121 SESLPQPKDVD 132
           SESLPQPKDVD
Sbjct: 121 SESLPQPKDVD 131

BLAST of Cucsa.313450 vs. NCBI nr
Match: gi|659131950|ref|XP_008465939.1| (PREDICTED: tobamovirus multiplication protein 2B [Cucumis melo])

HSP 1 Score: 243.4 bits (620), Expect = 2.2e-61
Identity = 128/131 (97.71%), Postives = 129/131 (98.47%), Query Frame = 1

Query: 1   MATASPSGRSNRDGTAKAMVADHISQSVRSTSNLLHLMQQSSSAQAQLTKLPKNLLAKAS 60
           MATASPSGRSNRDGTAKAMVADHISQSVRSTSNLLHLMQQSSSAQAQL KLPKNLLAKAS
Sbjct: 1   MATASPSGRSNRDGTAKAMVADHISQSVRSTSNLLHLMQQSSSAQAQLRKLPKNLLAKAS 60

Query: 61  TMKNTGKILEQMPQVVSSLDAYVEKGLESIPRLQTVVQLLTNMESSQLKSLSQFQHPQEE 120
           TM+NTGKILEQMPQVVSSLDAYVEKGLESIPRLQTVVQLLTNMESSQLKSLSQFQHPQEE
Sbjct: 61  TMRNTGKILEQMPQVVSSLDAYVEKGLESIPRLQTVVQLLTNMESSQLKSLSQFQHPQEE 120

Query: 121 SESLPQPKDVD 132
           SESL QPKDVD
Sbjct: 121 SESLHQPKDVD 131

BLAST of Cucsa.313450 vs. NCBI nr
Match: gi|568864040|ref|XP_006485418.1| (PREDICTED: tobamovirus multiplication protein 2B isoform X1 [Citrus sinensis])

HSP 1 Score: 167.9 bits (424), Expect = 1.2e-38
Identity = 87/129 (67.44%), Postives = 108/129 (83.72%), Query Frame = 1

Query: 3   TASPSGRSN-RDGTAKAMVADHISQSVRSTSNLLHLMQQSSSAQAQLTKLPKNLLAKAST 62
           TA+ SG S+ R+GTAKAMV D ISQ+++STSNLLHLMQQSS +Q QLTKLPKNLLAK + 
Sbjct: 5   TAAASGSSSSREGTAKAMVFDQISQTIQSTSNLLHLMQQSSPSQVQLTKLPKNLLAKTTM 64

Query: 63  MKNTGKILEQMPQVVSSLDAYVEKGLESIPRLQTVVQLLTNMESSQLKSLSQFQHPQEES 122
           +KNTG++LEQMPQV+SSLDA+VE GL+S+P L+TV QLL NMES QL SLSQ   P++ES
Sbjct: 65  IKNTGQVLEQMPQVISSLDAHVENGLQSVPHLRTVSQLLANMESCQLSSLSQAHLPEKES 124

Query: 123 ESLPQPKDV 131
           ++  QP +V
Sbjct: 125 QTAKQPPEV 133

BLAST of Cucsa.313450 vs. NCBI nr
Match: gi|802659512|ref|XP_012080851.1| (PREDICTED: tobamovirus multiplication protein 2B isoform X2 [Jatropha curcas])

HSP 1 Score: 164.1 bits (414), Expect = 1.7e-37
Identity = 91/143 (63.64%), Postives = 108/143 (75.52%), Query Frame = 1

Query: 1   MATASPSG-------------RSNRDGTAKAMVADHISQSVRSTSNLLHLMQQSSSAQAQ 60
           MAT+SPSG             RS R+ TAKAMVAD ISQ+V+STSNLL+LMQQSS++QAQ
Sbjct: 1   MATSSPSGGSGSGSGSGIPRSRSTREDTAKAMVADQISQAVQSTSNLLNLMQQSSASQAQ 60

Query: 61  LTKLPKNLLAKASTMKNTGKILEQMPQVVSSLDAYVEKGLESIPRLQTVVQLLTNMESSQ 120
           L KLPKNLLAKASTMKNTG+ LEQMPQV+SSLDA++E GLES+P L TV+QLL NME  Q
Sbjct: 61  LMKLPKNLLAKASTMKNTGQALEQMPQVISSLDAHMENGLESVPHLGTVIQLLENMERCQ 120

Query: 121 LKSLSQFQHPQEESESLPQPKDV 131
           L   S    PQ+E++   QP +V
Sbjct: 121 LNFPSHTHFPQKETKVSNQPPEV 143

BLAST of Cucsa.313450 vs. NCBI nr
Match: gi|1000949357|ref|XP_015579938.1| (PREDICTED: tobamovirus multiplication protein 2B [Ricinus communis])

HSP 1 Score: 164.1 bits (414), Expect = 1.7e-37
Identity = 85/120 (70.83%), Postives = 102/120 (85.00%), Query Frame = 1

Query: 11  NRDGTAKAMVADHISQSVRSTSNLLHLMQQSSSAQAQLTKLPKNLLAKASTMKNTGKILE 70
           +R+  AKA VA+HISQSV+STSNLL LMQQSSS+QAQLTKLPKNLLAKAS +KNTG++LE
Sbjct: 18  SREDAAKATVAEHISQSVQSTSNLLQLMQQSSSSQAQLTKLPKNLLAKASIIKNTGQVLE 77

Query: 71  QMPQVVSSLDAYVEKGLESIPRLQTVVQLLTNMESSQLKSLSQFQHPQEESESLPQPKDV 130
           QMP+V+SSLDA++E GL+S+P L+TV+QLL NMESSQL SLS    PQEESE   Q  +V
Sbjct: 78  QMPRVISSLDAHMENGLQSVPHLKTVIQLLENMESSQLNSLSHAYFPQEESERSNQTPEV 137

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TOM2B_ARATH4.7e-3266.96Tobamovirus multiplication protein 2B OS=Arabidopsis thaliana GN=TOM2B PE=2 SV=2[more]
Match NameE-valueIdentityDescription
A0A0A0LI80_CUCSA1.2e-63100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G904110 PE=4 SV=1[more]
V4VCD3_9ROSI2.0e-3768.25Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033051mg PE=4 SV=1[more]
U5GN76_POPTR4.5e-3763.28Tobamovirus multiplication protein 2B OS=Populus trichocarpa GN=POPTR_0001s02840... [more]
A0A0K9RR13_SPIOL8.4e-3668.03Uncharacterized protein OS=Spinacia oleracea GN=SOVF_038950 PE=4 SV=1[more]
M5WB21_PRUPE7.1e-3565.32Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013291mg PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G32370.22.7e-3366.96 tobamovirus multiplication 2B[more]
Match NameE-valueIdentityDescription
gi|778688029|ref|XP_011652663.1|1.8e-63100.00PREDICTED: tobamovirus multiplication protein 2B [Cucumis sativus][more]
gi|659131950|ref|XP_008465939.1|2.2e-6197.71PREDICTED: tobamovirus multiplication protein 2B [Cucumis melo][more]
gi|568864040|ref|XP_006485418.1|1.2e-3867.44PREDICTED: tobamovirus multiplication protein 2B isoform X1 [Citrus sinensis][more]
gi|802659512|ref|XP_012080851.1|1.7e-3763.64PREDICTED: tobamovirus multiplication protein 2B isoform X2 [Jatropha curcas][more]
gi|1000949357|ref|XP_015579938.1|1.7e-3770.83PREDICTED: tobamovirus multiplication protein 2B [Ricinus communis][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0046786 viral replication complex formation and maintenance
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.313450.2Cucsa.313450.2mRNA
Cucsa.313450.1Cucsa.313450.1mRNA


The following gene(s) are paralogous to this gene:

None