Cucsa.309370 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.309370
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Glycine-rich RNA-binding protein, putative
Location	scaffold02980 : 103388 .. 104943 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCCTTCCAGGCTTGTCTTGGTCCATGGACGAGAGATCATTGAAAGATGCCTTTTCTTCCTTTGGGGAGGTCACTGAAGGTAATCGTGCATGCTGAGCTTAACCCTTTGATTTACGAGTTGTAGTCTACGTGTTCGATGAAATGTCTAGTCGATTTCAGACCTCAGTTCAACACGTGTGCTTCTGGGTCGAAACATTTTGCTTCCTTGACATTCATGATTCCAAGGTTTTTCTTTTAAAACCAAATCTTGTTTCATTGAAGTTTCTTATTTTATAATTCTTGTAACGAGAATGAAAATGAGTTTTGAGATGTTTAGGATTTAGGAGCGTTTTGTTTTGTAGCGTTTTACTATGCTTTTGTGATTTTCTTGGAATATTGAGACAACAAAACAATGAGAAATATAGAGATTGAAGTAATAAAGAATTTGAGAGGTGGGAAACTAGAATTTATATATGAGTTCAAAGAAATTGATGTCCATTGGTAATCACTCTGGAACTTCACCAACAAAATAGCTTATGAGGATGGAGTTCATTTGATAAAGTTTAGATGAAATTGCATGACCATTTTGAAACTTCAGTGGTGATCACTAGTCTATAGGAACATTAATGTCCTGTGTCGATTGGTGATTAAAGATCAGTCTTAAAGACTGAAACTTTGACAGCAAAATAACTTATGGTGGAGATTGAGTTCACTTGATCAATAAGATGAAACTGAATGGTCAATGTGAAACTCTCGTGGTGATCACTAAAGGAACTTTGATGCCCATTGGTGATCACTCTGAAAACGTCACCAGCAAATATCCTATGGGTTTCATTTGGTACAGTTGGGATAAAATCCAATGACCACTGAAACTCCAGTGATCATCACTTTACAAATTTTGATATCCAGTGGTGATCACTCTGAAACTTCATCAGAATTGCTTATTGAGTTGAGGTCTTATGTTAAGATTTGAATAGCTTATGTGTTTTCTTGACAGTTAGGATAGTGTATGATAAAGACTCAGGTCGATCCAGAGGTTTCGGATTTGTGAACTTCGCAAATGGAAATGATGCCCAGTGTGCAAAAGATGCAATGGACGGAAAGGCAAGTCATTAATTTATAAGAAGTAGTTTGATAAGGTTTAGTCTGTCAATCATAAATTACTCAAAATGAAAGTCATCACGTTACTTGCAGGCAGTATTAGGGCGGCCATTGAGAATAAGCTTTGCCCTTGACAAGGTCCGTGGAGAACCTGTTGTCGTTCCTCGACTTTCAAACATCAACAACCTTGTGGGTCGAAGGTCTTAAAGCTCTTGGTGTTCCATCTACATGTTGCATGAATCTCTAATCTTGAACTGTTCAATTCCTACTTCTAAATCTGATTTAGATCCTTGACTTGGTTTTCCAGGTATGGAAACCAACAGTATGAAGGAACCTCAAGTTAGTATTGTTTGATAATCGCAGAGAAATATGATATCAATTTCTTTATTTGTATGCTCCTATATCCAAATATTTGGAAGAGACGAGGGAACAAAATTCCTGTAGCAGTAATCATGATTTATTTTTTATCAAGTCAT

mRNA sequence

TTCCTTCCAGGCTTGTCTTGGTCCATGGACGAGAGATCATTGAAAGATGCCTTTTCTTCCTTTGGGGAGGTCACTGAAGTTAGGATAGTGTATGATAAAGACTCAGGTCGATCCAGAGGTTTCGGATTTGTGAACTTCGCAAATGGAAATGATGCCCAGTGTGCAAAAGATGCAATGGACGGAAAGGCAGTATTAGGGCGGCCATTGAGAATAAGCTTTGCCCTTGACAAGGTCCGTGGAGAACCTGTTGTCGTTCCTCGACTTTCAAACATCAACAACCTTGTGGGTCGAAGGTCTTAAAGCTCTTGGTGTTCCATCTACATGTTGCATGAATCTCTAATCTTGAACTGTTCAATTCCTACTTCTAAATCTGATTTAGATCCTTGACTTGGTTTTCCAGGTATGGAAACCAACAGTATGAAGGAACCTCAAGTTAGTATTGTTTGATAATCGCAGAGAAATATGATATCAATTTCTTTATTTGTATGCTCCTATATCCAAATATTTGGAAGAGACGAGGGAACAAAATTCCTGTAGCAGTAATCATGATTTATTTTTTATCAAGTCAT

Coding sequence (CDS)

ATGGACGAGAGATCATTGAAAGATGCCTTTTCTTCCTTTGGGGAGGTCACTGAAGTTAGGATAGTGTATGATAAAGACTCAGGTCGATCCAGAGGTTTCGGATTTGTGAACTTCGCAAATGGAAATGATGCCCAGTGTGCAAAAGATGCAATGGACGGAAAGGCAGTATTAGGGCGGCCATTGAGAATAAGCTTTGCCCTTGACAAGGTCCGTGGAGAACCTGTTGTCGTTCCTCGACTTTCAAACATCAACAACCTTGTGGGTCGAAGGTCTTAA

Protein sequence

MDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANGNDAQCAKDAMDGKAVLGRPLRISFALDKVRGEPVVVPRLSNINNLVGRRS*

Homology

[Close]

BLAST of Cucsa.309370 vs. Swiss-Prot
Match: RBG3_ARATH (Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis thaliana GN=RBG3 PE=2 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 3.4e-13
Identity = 32/72 (44.44%), Postives = 52/72 (72.22%), Query Frame = 1


Query: 1   MDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANGNDAQCAKDAMDGKAVLGRP 60
           MDE SL++AF+ +GEV + R++ D+++GRSRGFGFV F +   A  A  A+DG+ + GR 
Sbjct: 51  MDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQALDGRDLHGRV 110

Query: 61  LRISFALDKVRG 73
           +++++A D+  G
Sbjct: 111 VKVNYANDRTSG 122

[Close]

BLAST of Cucsa.309370 vs. Swiss-Prot
Match: RBG4_ARATH (Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis thaliana GN=RBG4 PE=2 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.3e-12
Identity = 34/68 (50.00%), Postives = 50/68 (73.53%), Query Frame = 1


Query: 2   DERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANGNDAQCAKDAMDGKAVLGRPL 61
           D+ SLK AF+SFGEVTE  ++ D+++GRSRGFGFV+F+  + A  A   MDGK + GR +
Sbjct: 47  DDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQI 106

Query: 62  RISFALDK 70
           R++ A ++
Sbjct: 107 RVNLATER 114

[Close]

BLAST of Cucsa.309370 vs. Swiss-Prot
Match: RBG2_ARATH (Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana GN=RBG2 PE=1 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 6.5e-12
Identity = 32/68 (47.06%), Postives = 49/68 (72.06%), Query Frame = 1


Query: 2   DERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANGNDAQCAKDAMDGKAVLGRPL 61
           D+ SL+DAF+ FG+V + +++ D+++GRSRGFGFVNF +   A  A   MDGK + GR +
Sbjct: 47  DDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHI 106

Query: 62  RISFALDK 70
           R++ A D+
Sbjct: 107 RVNPANDR 114

[Close]

BLAST of Cucsa.309370 vs. Swiss-Prot
Match: RBM3_CAPHI (RNA-binding protein 3 OS=Capra hircus GN=RBM3 PE=2 SV=2)

HSP 1 Score: 70.5 bits (171), Expect = 1.1e-11
Identity = 34/71 (47.89%), Postives = 49/71 (69.01%), Query Frame = 1


Query: 2  DERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANGNDAQCAKDAMDGKAVLGRPL 61
          DER+L+D FSSFG ++EV +V D+++ RSRGFGF+ F N   A  A  AM+G+++ GR +
Sbjct: 18 DERALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMRAMNGESLDGRQI 77

Query: 62 RISFALDKVRG 73
          R+  A    RG
Sbjct: 78 RVDHAGKSARG 88

[Close]

BLAST of Cucsa.309370 vs. Swiss-Prot
Match: RBM3_HUMAN (RNA-binding protein 3 OS=Homo sapiens GN=RBM3 PE=1 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.9e-11
Identity = 33/71 (46.48%), Postives = 49/71 (69.01%), Query Frame = 1


Query: 2  DERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANGNDAQCAKDAMDGKAVLGRPL 61
          DE++L+D FSSFG ++EV +V D+++ RSRGFGF+ F N   A  A  AM+G+++ GR +
Sbjct: 18 DEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAMNGESLDGRQI 77

Query: 62 RISFALDKVRG 73
          R+  A    RG
Sbjct: 78 RVDHAGKSARG 88

[Close]

BLAST of Cucsa.309370 vs. TrEMBL
Match: A0A0A0LQB7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G416100 PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 6.5e-43
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 1


Query: 1   MDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANGNDAQCAKDAMDGKAVLGRP 60
           MDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANGNDAQCAKDAMDGKAVLGRP
Sbjct: 55  MDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANGNDAQCAKDAMDGKAVLGRP 114

Query: 61  LRISFALDKVRGEPVVVPRLSNINNLVGRR 91
           LRISFALDKVRGEPVVVPRLSNINNLVGRR
Sbjct: 115 LRISFALDKVRGEPVVVPRLSNINNLVGRR 144

[Close]

BLAST of Cucsa.309370 vs. TrEMBL
Match: B9SH52_RICCO (Glycine-rich RNA-binding protein, putative OS=Ricinus communis GN=RCOM_1116940 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 3.3e-31
Identity = 69/91 (75.82%), Postives = 81/91 (89.01%), Query Frame = 1


Query: 1   MDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANGNDAQCAKDAMDGKAVLGRP 60
           +DE+SLKDAFSSFGEV+EVRI+YDKDSGRSRGFGFVNF+  N+A CAKDAMDGKA+LGRP
Sbjct: 36  VDEKSLKDAFSSFGEVSEVRIMYDKDSGRSRGFGFVNFSKENEAVCAKDAMDGKALLGRP 95

Query: 61  LRISFALDKVRGEPVVVPRLSNINNLVGRRS 92
           LRISFAL+KVRG P+VVPRLS+  +   R +
Sbjct: 96  LRISFALEKVRGGPIVVPRLSSAGDNSNRNA 126

[Close]

BLAST of Cucsa.309370 vs. TrEMBL
Match: V7CFE3_PHAVU (Uncharacterized protein (Fragment) OS=Phaseolus vulgaris GN=PHAVU_003G2503000g PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 7.4e-31
Identity = 68/86 (79.07%), Postives = 80/86 (93.02%), Query Frame = 1


Query: 1  MDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANGNDAQCAKDAMDGKAVLGRP 60
          +DE+SLKDAFSSFG+VTEVRIVYDKDSGRSRGFGF+ F+N +DA+CAK+AMDGKA+LGRP
Sbjct: 5  VDEKSLKDAFSSFGDVTEVRIVYDKDSGRSRGFGFIIFSNEDDAKCAKEAMDGKALLGRP 64

Query: 61 LRISFALDKVRGEPVVVPRLSNINNL 87
          LRIS AL+K RG PVVVPRLS+I +L
Sbjct: 65 LRISIALEKARGVPVVVPRLSDIGHL 90

[Close]

BLAST of Cucsa.309370 vs. TrEMBL
Match: A0A0S3R4L5_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G338600 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 1.3e-30
Identity = 68/86 (79.07%), Postives = 80/86 (93.02%), Query Frame = 1


Query: 1   MDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANGNDAQCAKDAMDGKAVLGRP 60
           +DE+SLKDAFSSFG+VTEVRIVYDKDSGRSRGFGFV F+N +DA+CAK+AMDGKA+LGRP
Sbjct: 49  VDEKSLKDAFSSFGDVTEVRIVYDKDSGRSRGFGFVIFSNEDDAKCAKEAMDGKALLGRP 108

Query: 61  LRISFALDKVRGEPVVVPRLSNINNL 87
           LRI+ AL+K RG PVVVPRLS+I +L
Sbjct: 109 LRINIALEKARGVPVVVPRLSDIGHL 134

[Close]

BLAST of Cucsa.309370 vs. TrEMBL
Match: A0A0L9T5H6_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan123s000600 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 1.3e-30
Identity = 68/86 (79.07%), Postives = 80/86 (93.02%), Query Frame = 1


Query: 1   MDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANGNDAQCAKDAMDGKAVLGRP 60
           +DE+SLKDAFSSFG+VTEVRIVYDKDSGRSRGFGFV F+N +DA+CAK+AMDGKA+LGRP
Sbjct: 49  VDEKSLKDAFSSFGDVTEVRIVYDKDSGRSRGFGFVIFSNEDDAKCAKEAMDGKALLGRP 108

Query: 61  LRISFALDKVRGEPVVVPRLSNINNL 87
           LRI+ AL+K RG PVVVPRLS+I +L
Sbjct: 109 LRINIALEKARGVPVVVPRLSDIGHL 134

[Close]

BLAST of Cucsa.309370 vs. TAIR10
Match: AT3G08000.1 (AT3G08000.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 128.3 bits (321), Expect = 2.5e-30
Identity = 64/80 (80.00%), Postives = 70/80 (87.50%), Query Frame = 1


Query: 1   MDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANGNDAQCAKDAMDGKAVLGRP 60
           +DE+SLKDAFSSFGEV EVRI YDK SGRSRGFGFV+FA   DA  AKDAMDGK +LGRP
Sbjct: 52  VDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDAMDGKGLLGRP 111

Query: 61  LRISFALDKVRGEPVVVPRL 81
           LRISFAL++VRG PVVVPRL
Sbjct: 112 LRISFALERVRGGPVVVPRL 131

[Close]

BLAST of Cucsa.309370 vs. TAIR10
Match: AT5G61030.1 (AT5G61030.1 glycine-rich RNA-binding protein 3)

HSP 1 Score: 75.5 bits (184), Expect = 1.9e-14
Identity = 32/72 (44.44%), Postives = 52/72 (72.22%), Query Frame = 1


Query: 1   MDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANGNDAQCAKDAMDGKAVLGRP 60
           MDE SL++AF+ +GEV + R++ D+++GRSRGFGFV F +   A  A  A+DG+ + GR 
Sbjct: 51  MDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQALDGRDLHGRV 110

Query: 61  LRISFALDKVRG 73
           +++++A D+  G
Sbjct: 111 VKVNYANDRTSG 122

[Close]

BLAST of Cucsa.309370 vs. TAIR10
Match: AT3G23830.1 (AT3G23830.1 glycine-rich RNA-binding protein 4)

HSP 1 Score: 73.6 bits (179), Expect = 7.3e-14
Identity = 34/68 (50.00%), Postives = 50/68 (73.53%), Query Frame = 1


Query: 2   DERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANGNDAQCAKDAMDGKAVLGRPL 61
           D+ SLK AF+SFGEVTE  ++ D+++GRSRGFGFV+F+  + A  A   MDGK + GR +
Sbjct: 47  DDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQI 106

Query: 62  RISFALDK 70
           R++ A ++
Sbjct: 107 RVNLATER 114

[Close]

BLAST of Cucsa.309370 vs. TAIR10
Match: AT4G13850.1 (AT4G13850.1 glycine-rich RNA-binding protein 2)

HSP 1 Score: 71.2 bits (173), Expect = 3.6e-13
Identity = 32/68 (47.06%), Postives = 49/68 (72.06%), Query Frame = 1


Query: 2   DERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANGNDAQCAKDAMDGKAVLGRPL 61
           D+ SL+DAF+ FG+V + +++ D+++GRSRGFGFVNF +   A  A   MDGK + GR +
Sbjct: 47  DDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHI 106

Query: 62  RISFALDK 70
           R++ A D+
Sbjct: 107 RVNPANDR 114

[Close]

BLAST of Cucsa.309370 vs. TAIR10
Match: AT5G47320.1 (AT5G47320.1 ribosomal protein S19)

HSP 1 Score: 67.8 bits (164), Expect = 4.0e-12
Identity = 34/67 (50.75%), Postives = 47/67 (70.15%), Query Frame = 1


Query: 2   DERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANGNDAQCAKDAMDGKAVLGRPL 61
           DE SLKDAFSSF  VTE R++ +K +GRSRG+GFVNF + + A  A  AM+G+ + G  +
Sbjct: 43  DEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISAMNGQELNGFNI 102

Query: 62  RISFALD 69
            ++ A D
Sbjct: 103 SVNVAKD 109

[Close]

BLAST of Cucsa.309370 vs. NCBI nr
Match: gi|449468384|ref|XP_004151901.1| (PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial-like [Cucumis sativus])

HSP 1 Score: 182.6 bits (462), Expect = 3.2e-43
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 1


Query: 1   MDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANGNDAQCAKDAMDGKAVLGRP 60
           MDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANGNDAQCAKDAMDGKAVLGRP
Sbjct: 55  MDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANGNDAQCAKDAMDGKAVLGRP 114

Query: 61  LRISFALDKVRGEPVVVPRLSNINNLVGRRS 92
           LRISFALDKVRGEPVVVPRLSNINNLVGRRS
Sbjct: 115 LRISFALDKVRGEPVVVPRLSNINNLVGRRS 145

[Close]

BLAST of Cucsa.309370 vs. NCBI nr
Match: gi|700208100|gb|KGN63219.1| (hypothetical protein Csa_2G416100 [Cucumis sativus])

HSP 1 Score: 181.0 bits (458), Expect = 9.3e-43
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 1


Query: 1   MDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANGNDAQCAKDAMDGKAVLGRP 60
           MDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANGNDAQCAKDAMDGKAVLGRP
Sbjct: 55  MDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANGNDAQCAKDAMDGKAVLGRP 114

Query: 61  LRISFALDKVRGEPVVVPRLSNINNLVGRR 91
           LRISFALDKVRGEPVVVPRLSNINNLVGRR
Sbjct: 115 LRISFALDKVRGEPVVVPRLSNINNLVGRR 144

[Close]

BLAST of Cucsa.309370 vs. NCBI nr
Match: gi|659111830|ref|XP_008455929.1| (PREDICTED: glycine-rich RNA-binding protein 3, mitochondrial [Cucumis melo])

HSP 1 Score: 170.6 bits (431), Expect = 1.3e-39
Identity = 85/91 (93.41%), Postives = 88/91 (96.70%), Query Frame = 1


Query: 1   MDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANGNDAQCAKDAMDGKAVLGRP 60
           MDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFV+FAN NDAQCAKDAMDGKAVLGRP
Sbjct: 74  MDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVDFANENDAQCAKDAMDGKAVLGRP 133

Query: 61  LRISFALDKVRGEPVVVPRLSNINNLVGRRS 92
           L+ISFAL+KVRG PV VPRLSNINNLVGRRS
Sbjct: 134 LKISFALEKVRGGPVAVPRLSNINNLVGRRS 164

[Close]

BLAST of Cucsa.309370 vs. NCBI nr
Match: gi|1009158381|ref|XP_015897259.1| (PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial [Ziziphus jujuba])

HSP 1 Score: 145.2 bits (365), Expect = 5.6e-32
Identity = 70/85 (82.35%), Postives = 79/85 (92.94%), Query Frame = 1


Query: 1   MDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANGNDAQCAKDAMDGKAVLGRP 60
           +DE+SLKDAFSSFGEVTEVRI+YDKDSGRSRGFGFV+F+  NDA+CAKDAMDGKA LGRP
Sbjct: 51  VDEKSLKDAFSSFGEVTEVRILYDKDSGRSRGFGFVHFSMENDAKCAKDAMDGKAFLGRP 110

Query: 61  LRISFALDKVRGEPVVVPRLSNINN 86
           LRISFA DKVRG PVV+PRL+NI +
Sbjct: 111 LRISFAFDKVRGGPVVIPRLTNIED 135

[Close]

BLAST of Cucsa.309370 vs. NCBI nr
Match: gi|720087471|ref|XP_010244158.1| (PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial [Nelumbo nucifera])

HSP 1 Score: 143.3 bits (360), Expect = 2.1e-31
Identity = 68/85 (80.00%), Postives = 80/85 (94.12%), Query Frame = 1


Query: 1   MDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANGNDAQCAKDAMDGKAVLGRP 60
           +DE+SLKDAFSSFGEVTEVRI+YD+D+GRSRGFGFV+F+  +DA+CAKDAMDGKA LGRP
Sbjct: 49  VDEKSLKDAFSSFGEVTEVRIMYDRDTGRSRGFGFVHFSKDDDARCAKDAMDGKAFLGRP 108

Query: 61  LRISFALDKVRGEPVVVPRLSNINN 86
           LRISFAL+KVRG PVVVPRLS++ N
Sbjct: 109 LRISFALEKVRGGPVVVPRLSSVEN 133

The following BLAST results are available for this feature:

BLAST of Cucsa.309370 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RBG3_ARATH	3.4e-13	44.44	Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis thaliana GN=RBG...	[more]
RBG4_ARATH	1.3e-12	50.00	Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis thaliana GN=RBG...	[more]
RBG2_ARATH	6.5e-12	47.06	Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana GN=RBG...	[more]
RBM3_CAPHI	1.1e-11	47.89	RNA-binding protein 3 OS=Capra hircus GN=RBM3 PE=2 SV=2	[more]
RBM3_HUMAN	1.9e-11	46.48	RNA-binding protein 3 OS=Homo sapiens GN=RBM3 PE=1 SV=1	[more]

BLAST of Cucsa.309370 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQB7_CUCSA	6.5e-43	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G416100 PE=4 SV=1	[more]
B9SH52_RICCO	3.3e-31	75.82	Glycine-rich RNA-binding protein, putative OS=Ricinus communis GN=RCOM_1116940 P...	[more]
V7CFE3_PHAVU	7.4e-31	79.07	Uncharacterized protein (Fragment) OS=Phaseolus vulgaris GN=PHAVU_003G2503000g P...	[more]
A0A0S3R4L5_PHAAN	1.3e-30	79.07	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G338600 PE=...	[more]
A0A0L9T5H6_PHAAN	1.3e-30	79.07	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan123s000600 PE=4 SV=1	[more]

BLAST of Cucsa.309370 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G08000.1	2.5e-30	80.00	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G61030.1	1.9e-14	44.44	glycine-rich RNA-binding protein 3	[more]
AT3G23830.1	7.3e-14	50.00	glycine-rich RNA-binding protein 4	[more]
AT4G13850.1	3.6e-13	47.06	glycine-rich RNA-binding protein 2	[more]
AT5G47320.1	4.0e-12	50.75	ribosomal protein S19	[more]

BLAST of Cucsa.309370 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449468384\|ref\|XP_004151901.1\|	3.2e-43	100.00	PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial-like [Cucumis sativ...	[more]
gi\|700208100\|gb\|KGN63219.1\|	9.3e-43	100.00	hypothetical protein Csa_2G416100 [Cucumis sativus]	[more]
gi\|659111830\|ref\|XP_008455929.1\|	1.3e-39	93.41	PREDICTED: glycine-rich RNA-binding protein 3, mitochondrial [Cucumis melo]	[more]
gi\|1009158381\|ref\|XP_015897259.1\|	5.6e-32	82.35	PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial [Ziziphus jujuba]	[more]
gi\|720087471\|ref\|XP_010244158.1\|	2.1e-31	80.00	PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial [Nelumbo nucifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0000166	nucleotide binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.309370.1	Cucsa.309370.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 1..62 score: 4.4
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 1..64 score: 5.7
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 1..68 score: 1
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 1..70 score: 3.0
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 1..73 score: 5.91
None	No IPR available	PANTHER	PTHR24012	FAMILY NOT NAMED	coord: 1..69 score: 2.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.309370	Csa2G416100	Cucumber (Chinese Long) v2	cgycuB443
Cucsa.309370	MELO3C019305	Melon (DHL92) v3.5.1	cgymeB511
Cucsa.309370	ClCG02G010060	Watermelon (Charleston Gray)	cgywcgB533
Cucsa.309370	CSPI02G26140	Wild cucumber (PI 183967)	cgycpiB466
Cucsa.309370	MELO3C019305.2	Melon (DHL92) v3.6.1	cgymedB510
Cucsa.309370	CsaV3_2G034630	Cucumber (Chinese Long) v3	cgycucB481
Cucsa.309370	Cla97C02G036190	Watermelon (97103) v2	cgywmbB536
Cucsa.309370	Bhi10G001083	Wax gourd	cgywgoB621

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.309370	Silver-seed gourd	carcgyB0036
Cucsa.309370	Silver-seed gourd	carcgyB0401
Cucsa.309370	Cucurbita maxima (Rimu)	cgycmaB0852
Cucsa.309370	Cucurbita maxima (Rimu)	cgycmaB0853
Cucsa.309370	Cucurbita moschata (Rifu)	cgycmoB0850
Cucsa.309370	Cucurbita moschata (Rifu)	cgycmoB0851
Cucsa.309370	Cucurbita pepo (Zucchini)	cgycpeB0808
Cucsa.309370	Cucurbita pepo (Zucchini)	cgycpeB0809
Cucsa.309370	Bottle gourd (USVL1VR-Ls)	cgylsiB499