Cucsa.309370.1 (mRNA) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TTCCTTCCAGGCTTGTCTTGGTCCATGGACGAGAGATCATTGAAAGATGCCTTTTCTTCCTTTGGGGAGGTCACTGAAGGTAATCGTGCATGCTGAGCTTAACCCTTTGATTTACGAGTTGTAGTCTACGTGTTCGATGAAATGTCTAGTCGATTTCAGACCTCAGTTCAACACGTGTGCTTCTGGGTCGAAACATTTTGCTTCCTTGACATTCATGATTCCAAGGTTTTTCTTTTAAAACCAAATCTTGTTTCATTGAAGTTTCTTATTTTATAATTCTTGTAACGAGAATGAAAATGAGTTTTGAGATGTTTAGGATTTAGGAGCGTTTTGTTTTGTAGCGTTTTACTATGCTTTTGTGATTTTCTTGGAATATTGAGACAACAAAACAATGAGAAATATAGAGATTGAAGTAATAAAGAATTTGAGAGGTGGGAAACTAGAATTTATATATGAGTTCAAAGAAATTGATGTCCATTGGTAATCACTCTGGAACTTCACCAACAAAATAGCTTATGAGGATGGAGTTCATTTGATAAAGTTTAGATGAAATTGCATGACCATTTTGAAACTTCAGTGGTGATCACTAGTCTATAGGAACATTAATGTCCTGTGTCGATTGGTGATTAAAGATCAGTCTTAAAGACTGAAACTTTGACAGCAAAATAACTTATGGTGGAGATTGAGTTCACTTGATCAATAAGATGAAACTGAATGGTCAATGTGAAACTCTCGTGGTGATCACTAAAGGAACTTTGATGCCCATTGGTGATCACTCTGAAAACGTCACCAGCAAATATCCTATGGGTTTCATTTGGTACAGTTGGGATAAAATCCAATGACCACTGAAACTCCAGTGATCATCACTTTACAAATTTTGATATCCAGTGGTGATCACTCTGAAACTTCATCAGAATTGCTTATTGAGTTGAGGTCTTATGTTAAGATTTGAATAGCTTATGTGTTTTCTTGACAGTTAGGATAGTGTATGATAAAGACTCAGGTCGATCCAGAGGTTTCGGATTTGTGAACTTCGCAAATGGAAATGATGCCCAGTGTGCAAAAGATGCAATGGACGGAAAGGCAAGTCATTAATTTATAAGAAGTAGTTTGATAAGGTTTAGTCTGTCAATCATAAATTACTCAAAATGAAAGTCATCACGTTACTTGCAGGCAGTATTAGGGCGGCCATTGAGAATAAGCTTTGCCCTTGACAAGGTCCGTGGAGAACCTGTTGTCGTTCCTCGACTTTCAAACATCAACAACCTTGTGGGTCGAAGGTCTTAAAGCTCTTGGTGTTCCATCTACATGTTGCATGAATCTCTAATCTTGAACTGTTCAATTCCTACTTCTAAATCTGATTTAGATCCTTGACTTGGTTTTCCAGGTATGGAAACCAACAGTATGAAGGAACCTCAAGTTAGTATTGTTTGATAATCGCAGAGAAATATGATATCAATTTCTTTATTTGTATGCTCCTATATCCAAATATTTGGAAGAGACGAGGGAACAAAATTCCTGTAGCAGTAATCATGATTTATTTTTTATCAAGTCAT TTCCTTCCAGGCTTGTCTTGGTCCATGGACGAGAGATCATTGAAAGATGCCTTTTCTTCCTTTGGGGAGGTCACTGAAGTTAGGATAGTGTATGATAAAGACTCAGGTCGATCCAGAGGTTTCGGATTTGTGAACTTCGCAAATGGAAATGATGCCCAGTGTGCAAAAGATGCAATGGACGGAAAGGCAGTATTAGGGCGGCCATTGAGAATAAGCTTTGCCCTTGACAAGGTCCGTGGAGAACCTGTTGTCGTTCCTCGACTTTCAAACATCAACAACCTTGTGGGTCGAAGGTCTTAAAGCTCTTGGTGTTCCATCTACATGTTGCATGAATCTCTAATCTTGAACTGTTCAATTCCTACTTCTAAATCTGATTTAGATCCTTGACTTGGTTTTCCAGGTATGGAAACCAACAGTATGAAGGAACCTCAAGTTAGTATTGTTTGATAATCGCAGAGAAATATGATATCAATTTCTTTATTTGTATGCTCCTATATCCAAATATTTGGAAGAGACGAGGGAACAAAATTCCTGTAGCAGTAATCATGATTTATTTTTTATCAAGTCAT ATGGACGAGAGATCATTGAAAGATGCCTTTTCTTCCTTTGGGGAGGTCACTGAAGTTAGGATAGTGTATGATAAAGACTCAGGTCGATCCAGAGGTTTCGGATTTGTGAACTTCGCAAATGGAAATGATGCCCAGTGTGCAAAAGATGCAATGGACGGAAAGGCAGTATTAGGGCGGCCATTGAGAATAAGCTTTGCCCTTGACAAGGTCCGTGGAGAACCTGTTGTCGTTCCTCGACTTTCAAACATCAACAACCTTGTGGGTCGAAGGTCTTAA MDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANGNDAQCAKDAMDGKAVLGRPLRISFALDKVRGEPVVVPRLSNINNLVGRRS*
BLAST of Cucsa.309370.1 vs. Swiss-Prot
Match: RBG3_ARATH (Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis thaliana GN=RBG3 PE=2 SV=1) HSP 1 Score: 75.5 bits (184), Expect = 3.4e-13 Identity = 32/72 (44.44%), Postives = 52/72 (72.22%), Query Frame = 1
BLAST of Cucsa.309370.1 vs. Swiss-Prot
Match: RBG4_ARATH (Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis thaliana GN=RBG4 PE=2 SV=1) HSP 1 Score: 73.6 bits (179), Expect = 1.3e-12 Identity = 34/68 (50.00%), Postives = 50/68 (73.53%), Query Frame = 1
BLAST of Cucsa.309370.1 vs. Swiss-Prot
Match: RBG2_ARATH (Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana GN=RBG2 PE=1 SV=1) HSP 1 Score: 71.2 bits (173), Expect = 6.5e-12 Identity = 32/68 (47.06%), Postives = 49/68 (72.06%), Query Frame = 1
BLAST of Cucsa.309370.1 vs. Swiss-Prot
Match: RBM3_CAPHI (RNA-binding protein 3 OS=Capra hircus GN=RBM3 PE=2 SV=2) HSP 1 Score: 70.5 bits (171), Expect = 1.1e-11 Identity = 34/71 (47.89%), Postives = 49/71 (69.01%), Query Frame = 1
BLAST of Cucsa.309370.1 vs. Swiss-Prot
Match: RBM3_HUMAN (RNA-binding protein 3 OS=Homo sapiens GN=RBM3 PE=1 SV=1) HSP 1 Score: 69.7 bits (169), Expect = 1.9e-11 Identity = 33/71 (46.48%), Postives = 49/71 (69.01%), Query Frame = 1
BLAST of Cucsa.309370.1 vs. TrEMBL
Match: A0A0A0LQB7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G416100 PE=4 SV=1) HSP 1 Score: 181.0 bits (458), Expect = 6.5e-43 Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 1
BLAST of Cucsa.309370.1 vs. TrEMBL
Match: B9SH52_RICCO (Glycine-rich RNA-binding protein, putative OS=Ricinus communis GN=RCOM_1116940 PE=4 SV=1) HSP 1 Score: 142.1 bits (357), Expect = 3.3e-31 Identity = 69/91 (75.82%), Postives = 81/91 (89.01%), Query Frame = 1
BLAST of Cucsa.309370.1 vs. TrEMBL
Match: V7CFE3_PHAVU (Uncharacterized protein (Fragment) OS=Phaseolus vulgaris GN=PHAVU_003G2503000g PE=4 SV=1) HSP 1 Score: 141.0 bits (354), Expect = 7.4e-31 Identity = 68/86 (79.07%), Postives = 80/86 (93.02%), Query Frame = 1
BLAST of Cucsa.309370.1 vs. TrEMBL
Match: A0A0S3R4L5_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G338600 PE=4 SV=1) HSP 1 Score: 140.2 bits (352), Expect = 1.3e-30 Identity = 68/86 (79.07%), Postives = 80/86 (93.02%), Query Frame = 1
BLAST of Cucsa.309370.1 vs. TrEMBL
Match: A0A0L9T5H6_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan123s000600 PE=4 SV=1) HSP 1 Score: 140.2 bits (352), Expect = 1.3e-30 Identity = 68/86 (79.07%), Postives = 80/86 (93.02%), Query Frame = 1
BLAST of Cucsa.309370.1 vs. TAIR10
Match: AT3G08000.1 (AT3G08000.1 RNA-binding (RRM/RBD/RNP motifs) family protein) HSP 1 Score: 128.3 bits (321), Expect = 2.5e-30 Identity = 64/80 (80.00%), Postives = 70/80 (87.50%), Query Frame = 1
BLAST of Cucsa.309370.1 vs. TAIR10
Match: AT5G61030.1 (AT5G61030.1 glycine-rich RNA-binding protein 3) HSP 1 Score: 75.5 bits (184), Expect = 1.9e-14 Identity = 32/72 (44.44%), Postives = 52/72 (72.22%), Query Frame = 1
BLAST of Cucsa.309370.1 vs. TAIR10
Match: AT3G23830.1 (AT3G23830.1 glycine-rich RNA-binding protein 4) HSP 1 Score: 73.6 bits (179), Expect = 7.3e-14 Identity = 34/68 (50.00%), Postives = 50/68 (73.53%), Query Frame = 1
BLAST of Cucsa.309370.1 vs. TAIR10
Match: AT4G13850.1 (AT4G13850.1 glycine-rich RNA-binding protein 2) HSP 1 Score: 71.2 bits (173), Expect = 3.6e-13 Identity = 32/68 (47.06%), Postives = 49/68 (72.06%), Query Frame = 1
BLAST of Cucsa.309370.1 vs. TAIR10
Match: AT5G47320.1 (AT5G47320.1 ribosomal protein S19) HSP 1 Score: 67.8 bits (164), Expect = 4.0e-12 Identity = 34/67 (50.75%), Postives = 47/67 (70.15%), Query Frame = 1
BLAST of Cucsa.309370.1 vs. NCBI nr
Match: gi|449468384|ref|XP_004151901.1| (PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial-like [Cucumis sativus]) HSP 1 Score: 182.6 bits (462), Expect = 3.2e-43 Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 1
BLAST of Cucsa.309370.1 vs. NCBI nr
Match: gi|700208100|gb|KGN63219.1| (hypothetical protein Csa_2G416100 [Cucumis sativus]) HSP 1 Score: 181.0 bits (458), Expect = 9.3e-43 Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 1
BLAST of Cucsa.309370.1 vs. NCBI nr
Match: gi|659111830|ref|XP_008455929.1| (PREDICTED: glycine-rich RNA-binding protein 3, mitochondrial [Cucumis melo]) HSP 1 Score: 170.6 bits (431), Expect = 1.3e-39 Identity = 85/91 (93.41%), Postives = 88/91 (96.70%), Query Frame = 1
BLAST of Cucsa.309370.1 vs. NCBI nr
Match: gi|1009158381|ref|XP_015897259.1| (PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial [Ziziphus jujuba]) HSP 1 Score: 145.2 bits (365), Expect = 5.6e-32 Identity = 70/85 (82.35%), Postives = 79/85 (92.94%), Query Frame = 1
BLAST of Cucsa.309370.1 vs. NCBI nr
Match: gi|720087471|ref|XP_010244158.1| (PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial [Nelumbo nucifera]) HSP 1 Score: 143.3 bits (360), Expect = 2.1e-31 Identity = 68/85 (80.00%), Postives = 80/85 (94.12%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
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