ClCG02G010060 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG02G010060
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	RNA binding protein-like protein
Location	CG_Chr02 : 16961577 .. 16963465 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTTGGTTAGCATGAAAAACACCCATTTCTCCAAAGTTCACAGTCAATTAATCGGCCTTTAAACGCACATTCTAAAATCACATCAATTGACGAGCTTTGTGATAGCAAAGTTTTAGTTCCCGTCGTCGAACTCGATCACGAGCAATAACAAATGATGAGCAACATGAACACCTTGATACTGCTTGGCAGAAAAGCACTCACCAATATCCAAACCCCAATTCTGAGCTTTCGTTACTTCTGTTCTCAAGCCTCCTCCTCCTCGGCTCCCTCTTCTTCTCCTTCTGCGCCAAACAATAAGCTCTTCGTCGCAGGTTCGTGTCTCTTCCTCAATCCAGTCCCACAGTTGCAGCACCCACAGTTGCAGCACCCACATGATTCAAATGGTATATACATTGAATTTGATCTTGTTTGTTCCTGTGGCTTTCAGGGTTGTCTTGGTCGATGGACGAGAGATCATTGAAAGATGCTTTTTCTTCGTTTGGGGAGGTTACTGAAGGTAATCGTGAATGCTGTGTTAAAGCATTTTGATGTATGAGTTGTAGTCTACGTGTTCGACGAAATGTCTAGTCTATTTCAGACCTCAATTCATCACGTGTACTTCTGGGTCGAAACTTTTGCTTCGTTGACATTCATAATTCCAAGGATTTTCTTTTAAAAACAAAATTTGTTTCATTAAAGTTTCCTGTTTTATGAGTTTTGTAACGAGAGACTTAGTGCCTGGTTGAAATTAGGAGAGCAAATGACTGTCAGATGAGTAGGATCAGGAGCATATTGTTTTGTAGCATTTTACTATCCTTCTGCAATTTTCTTGAAATGTTGAGACTGCAAAACAATGAGATATATAGAGATTGAAGTACAACGAATTTGAGAGGTGGGAAATTAGAATTTATATATGAGCTGAAAGGAATTTGATGTCCATTGGTAATCACTATAGAACTTCAACCACAAAATAGCTTATGGCCACGGAGGTCCTTTGATATAGTTAAAGATGAATGACCAGTGTGAAACTTCAGTGTTGATGTCCATTGTAAAGGAACTTTGATGTCCATTGGTGACCACTTTTGAAATTTCACCAGCAAATATCCTATGGATTCCATTTGATGTAGTTAGGATAAAATTCAATGACCACTGAAACTTCAGTGATCATCACTATACGAACTTTGATATCCAGTAGTGATCACTCTGAAACTTCATCAGTAAATTTCTTATTGAGTTGAGTTCTTATGTTAAGATTTGAATGGCTTATATGTTCTCTTGACAGTCAGGATAATGTATGATAAAGACTCAGGTCGATCCAGAGGCTTTGGGTTTGTGAACTTCACAAATGAAAATGATGCACAATGTGCAAAAGATGCAATGGATGGAAAGGCAAGTCGTTAATTAGTAAGAAATTATTTGACGGGGTTTAGTCTATCATCATAAATTACTCAAGAAAGTCATCGCATCACTTGCAGGCGTTATTAGGGCGACCATTGAGGATAAGCTTTGCCCTTGACAAGGTCCGTGGAGGACCTGTTGTCATTCCTCGACTTTCAAACGTCAACAACATGGTGGGCCAAAGGTCTTGAAGCTCTTGGTATTTCATCTACCTATAGGAATATGTAATCTCGAACTGTTCAATTCCTACTTCTTAGTTTAATTTTGCACGTTGACTTGGTTTTGCAGGTGTGGAAACCAATAGTATAAAGAACCTCAAGTTAGTATTGTTTACTAATGGCAGAAAAATGCAATATCAAATTTCTTGTTTGTACGCTCCTATATCCAAATATTTGGAAGAAATGAGGGATCAAAATGCTTGTAGAACTACTTACGATTTATTTTGTGTCCATGATAGATGTTCCCAATTTATTTGGCCAGAAATCTTGCTTTCCATCTTAGTAGTATCTTTG

mRNA sequence

CTTTGGTTAGCATGAAAAACACCCATTTCTCCAAAGTTCACAGTCAATTAATCGGCCTTTAAACGCACATTCTAAAATCACATCAATTGACGAGCTTTGTGATAGCAAAGTTTTAGTTCCCGTCGTCGAACTCGATCACGAGCAATAACAAATGATGAGCAACATGAACACCTTGATACTGCTTGGCAGAAAAGCACTCACCAATATCCAAACCCCAATTCTGAGCTTTCGTTACTTCTGTTCTCAAGCCTCCTCCTCCTCGGCTCCCTCTTCTTCTCCTTCTGCGCCAAACAATAAGCTCTTCGTCGCAGGGTTGTCTTGGTCGATGGACGAGAGATCATTGAAAGATGCTTTTTCTTCGTTTGGGGAGGTTACTGAAGTCAGGATAATGTATGATAAAGACTCAGGTCGATCCAGAGGCTTTGGGTTTGTGAACTTCACAAATGAAAATGATGCACAATGTGCAAAAGATGCAATGGATGGAAAGGCAAGTCGGCGACCATTGAGGATAAGCTTTGCCCTTGACAAGGTCCGTGGAGGACCTGTTGTCATTCCTCGACTTTCAAACGTCAACAACATGGTGGGCCAAAGGTGTGGAAACCAATAGTATAAAGAACCTCAAGTTAGTATTGTTTACTAATGGCAGAAAAATGCAATATCAAATTTCTTGTTTGTACGCTCCTATATCCAAATATTTGGAAGAAATGAGGGATCAAAATGCTTGTAGAACTACTTACGATTTATTTTGTGTCCATGATAGATGTTCCCAATTTATTTGGCCAGAAATCTTGCTTTCCATCTTAGTAGTATCTTTG

Coding sequence (CDS)

ATGATGAGCAACATGAACACCTTGATACTGCTTGGCAGAAAAGCACTCACCAATATCCAAACCCCAATTCTGAGCTTTCGTTACTTCTGTTCTCAAGCCTCCTCCTCCTCGGCTCCCTCTTCTTCTCCTTCTGCGCCAAACAATAAGCTCTTCGTCGCAGGGTTGTCTTGGTCGATGGACGAGAGATCATTGAAAGATGCTTTTTCTTCGTTTGGGGAGGTTACTGAAGTCAGGATAATGTATGATAAAGACTCAGGTCGATCCAGAGGCTTTGGGTTTGTGAACTTCACAAATGAAAATGATGCACAATGTGCAAAAGATGCAATGGATGGAAAGGCAAGTCGGCGACCATTGAGGATAAGCTTTGCCCTTGACAAGGTCCGTGGAGGACCTGTTGTCATTCCTCGACTTTCAAACGTCAACAACATGGTGGGCCAAAGGTGTGGAAACCAATAG

Protein sequence

MMSNMNTLILLGRKALTNIQTPILSFRYFCSQASSSSAPSSSPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNENDAQCAKDAMDGKASRRPLRISFALDKVRGGPVVIPRLSNVNNMVGQRCGNQ

Homology

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BLAST of ClCG02G010060 vs. Swiss-Prot
Match: RBG4_ARATH (Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis thaliana GN=RBG4 PE=2 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 3.2e-16
Identity = 42/81 (51.85%), Postives = 58/81 (71.60%), Query Frame = 1


Query: 47  NNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNENDAQCAK 106
           ++KLFV GLSW  D+ SLK AF+SFGEVTE  ++ D+++GRSRGFGFV+F+ E+ A  A 
Sbjct: 34  SSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAI 93

Query: 107 DAMDGK-ASRRPLRISFALDK 127
             MDGK  + R +R++ A ++
Sbjct: 94  KEMDGKELNGRQIRVNLATER 114

[Close]

BLAST of ClCG02G010060 vs. Swiss-Prot
Match: RBG3_ARATH (Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis thaliana GN=RBG3 PE=2 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 5.4e-16
Identity = 38/85 (44.71%), Postives = 61/85 (71.76%), Query Frame = 1


Query: 47  NNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNENDAQCAK 106
           ++KLF+ G+++SMDE SL++AF+ +GEV + R++ D+++GRSRGFGFV FT+   A  A 
Sbjct: 39  SSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAI 98

Query: 107 DAMDGK-ASRRPLRISFALDKVRGG 131
            A+DG+    R +++++A D+  GG
Sbjct: 99  QALDGRDLHGRVVKVNYANDRTSGG 123

[Close]

BLAST of ClCG02G010060 vs. Swiss-Prot
Match: RBG2_ARATH (Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana GN=RBG2 PE=1 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.6e-15
Identity = 39/81 (48.15%), Postives = 56/81 (69.14%), Query Frame = 1


Query: 47  NNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNENDAQCAK 106
           + KLF+ GLSW  D+ SL+DAF+ FG+V + +++ D+++GRSRGFGFVNF +E  A  A 
Sbjct: 34  STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 93

Query: 107 DAMDGK-ASRRPLRISFALDK 127
             MDGK  + R +R++ A D+
Sbjct: 94  SEMDGKELNGRHIRVNPANDR 114

[Close]

BLAST of ClCG02G010060 vs. Swiss-Prot
Match: RBM3_CAPHI (RNA-binding protein 3 OS=Capra hircus GN=RBM3 PE=2 SV=2)

HSP 1 Score: 78.6 bits (192), Expect = 6.6e-14
Identity = 40/87 (45.98%), Postives = 57/87 (65.52%), Query Frame = 1


Query: 44  SAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNENDAQ 103
           S+   KLFV GL+++ DER+L+D FSSFG ++EV ++ D+++ RSRGFGF+ FTN   A 
Sbjct: 2   SSEEGKLFVGGLNFNTDERALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHAS 61

Query: 104 CAKDAMDGKA-SRRPLRISFALDKVRG 130
            A  AM+G++   R +R+  A    RG
Sbjct: 62  NAMRAMNGESLDGRQIRVDHAGKSARG 88

[Close]

BLAST of ClCG02G010060 vs. Swiss-Prot
Match: RT19_ARATH (40S ribosomal protein S19, mitochondrial OS=Arabidopsis thaliana GN=RPS19 PE=1 SV=2)

HSP 1 Score: 77.8 bits (190), Expect = 1.1e-13
Identity = 38/66 (57.58%), Postives = 47/66 (71.21%), Query Frame = 1


Query: 47  NNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNENDAQCAK 106
           + KL++ GLS   DE SLKDAFSSF  VTE R+M +K +GRSRG+GFVNF +E+ A  A 
Sbjct: 30  STKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAI 89

Query: 107 DAMDGK 113
            AM+G+
Sbjct: 90  SAMNGQ 95

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BLAST of ClCG02G010060 vs. TrEMBL
Match: A0A0A0LQB7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G416100 PE=4 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 2.5e-60
Identity = 123/151 (81.46%), Postives = 132/151 (87.42%), Query Frame = 1


Query: 2   MSNMNTLILLGRKALTNIQTPILSFRYFCSQASSSSAPSSSPSAPNNKLFVAGLSWSMDE 61
           MSN NT +LL RKALTNIQTP L FR FCSQ++S   P SS  +PNNKLFVAGLSWSMDE
Sbjct: 1   MSNTNTFLLLARKALTNIQTPFLGFRCFCSQSTS---PLSSSPSPNNKLFVAGLSWSMDE 60

Query: 62  RSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNENDAQCAKDAMDGKA-SRRPLRI 121
           RSLKDAFSSFGEVTEVRI+YDKDSGRSRGFGFVNF N NDAQCAKDAMDGKA   RPLRI
Sbjct: 61  RSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANGNDAQCAKDAMDGKAVLGRPLRI 120

Query: 122 SFALDKVRGGPVVIPRLSNVNNMVGQRCGNQ 152
           SFALDKVRG PVV+PRLSN+NN+VG+R GNQ
Sbjct: 121 SFALDKVRGEPVVVPRLSNINNLVGRRYGNQ 148

[Close]

BLAST of ClCG02G010060 vs. TrEMBL
Match: W9QHY3_9ROSA (Glycine-rich RNA-binding protein 2 OS=Morus notabilis GN=L484_004070 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 3.4e-41
Identity = 99/149 (66.44%), Postives = 113/149 (75.84%), Query Frame = 1


Query: 1   MMSNMNTLIL-LGRKALTN-----IQTPILSFRYFCSQASSSSAPSSSPSAPNNKLFVAG 60
           M S  NTL+  L R+A +       Q P L  R FCS  S SS+PSSS +  NNKLFV G
Sbjct: 1   MSSMSNTLMSSLARRAASTTTIPVFQNPFLGLRCFCS--SPSSSPSSSSTTSNNKLFVGG 60

Query: 61  LSWSMDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNENDAQCAKDAMDGKA- 120
           LSWS+DE+SLKDAFSSFGEV+EVRI+YDKDSGRSRGFGFV+F  E DA  AKD+MDGKA 
Sbjct: 61  LSWSVDEKSLKDAFSSFGEVSEVRILYDKDSGRSRGFGFVHFLKEEDAVSAKDSMDGKAL 120

Query: 121 SRRPLRISFALDKVRGGPVVIPRLSNVNN 143
             RPLRISFAL+KVRG PVV+PRLSNV +
Sbjct: 121 LGRPLRISFALEKVRGVPVVVPRLSNVGD 147

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BLAST of ClCG02G010060 vs. TrEMBL
Match: D7TEC9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0059g01210 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 2.4e-39
Identity = 90/135 (66.67%), Postives = 106/135 (78.52%), Query Frame = 1


Query: 6   NTLILLGRKALTNIQTPILSFRYFCSQASSSSAPSSSPSAPNNKLFVAGLSWSMDERSLK 65
           N+L+ L R+ALT +Q P   +R FCS  S  + PS      N KLFVAGLSWS+DE+SLK
Sbjct: 3   NSLVSLARRALT-VQNPAADWRCFCSSPSFPTPPS------NTKLFVAGLSWSVDEKSLK 62

Query: 66  DAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNENDAQCAKDAMDGKA-SRRPLRISFAL 125
           DAFSSFG+VTEVRIMYDKDSGRSRGFGFV F+ E DA+ AKDAMDGKA   RPLR+S+AL
Sbjct: 63  DAFSSFGDVTEVRIMYDKDSGRSRGFGFVYFSKEVDARSAKDAMDGKAFLGRPLRVSYAL 122

Query: 126 DKVRGGPVVIPRLSN 140
           +KVRGGP+V+PR  N
Sbjct: 123 EKVRGGPIVVPRRLN 130

[Close]

BLAST of ClCG02G010060 vs. TrEMBL
Match: A0A061DMK3_THECC (RNA-binding family protein isoform 1 OS=Theobroma cacao GN=TCM_002154 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 9.3e-39
Identity = 84/118 (71.19%), Postives = 100/118 (84.75%), Query Frame = 1


Query: 25  SFRYFCSQASSSSAPSSSPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIMYDKD 84
           S+R++CS  SSS+ P      PN KLFVAGLSWS+DE+SLKDAFSSFG V+EVRIMYDKD
Sbjct: 24  SWRFYCSPTSSSTRPP-----PNGKLFVAGLSWSVDEKSLKDAFSSFGHVSEVRIMYDKD 83

Query: 85  SGRSRGFGFVNFTNENDAQCAKDAMDGKA-SRRPLRISFALDKVRGGPVVIPRLSNVN 142
           +GRSRGFGFV+F+ E++A+CAKDAMDGKA   RPLRISFAL+K+RG PVV+PRL N N
Sbjct: 84  TGRSRGFGFVHFSKEDEARCAKDAMDGKALLGRPLRISFALEKIRGAPVVVPRLPNGN 136

[Close]

BLAST of ClCG02G010060 vs. TrEMBL
Match: B9SH52_RICCO (Glycine-rich RNA-binding protein, putative OS=Ricinus communis GN=RCOM_1116940 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 1.6e-38
Identity = 86/118 (72.88%), Postives = 100/118 (84.75%), Query Frame = 1


Query: 27  RYFCSQASSSSAPSSSPSAP-NNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIMYDKDS 86
           R   S A  ++   +SPS P N+KLFVAGLSWS+DE+SLKDAFSSFGEV+EVRIMYDKDS
Sbjct: 3   RALISVAKRATTLHNSPSPPPNSKLFVAGLSWSVDEKSLKDAFSSFGEVSEVRIMYDKDS 62

Query: 87  GRSRGFGFVNFTNENDAQCAKDAMDGKA-SRRPLRISFALDKVRGGPVVIPRLSNVNN 143
           GRSRGFGFVNF+ EN+A CAKDAMDGKA   RPLRISFAL+KVRGGP+V+PRLS+  +
Sbjct: 63  GRSRGFGFVNFSKENEAVCAKDAMDGKALLGRPLRISFALEKVRGGPIVVPRLSSAGD 120

[Close]

BLAST of ClCG02G010060 vs. TAIR10
Match: AT3G08000.1 (AT3G08000.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 148.7 bits (374), Expect = 2.9e-36
Identity = 83/133 (62.41%), Postives = 95/133 (71.43%), Query Frame = 1


Query: 6   NTLILLGRKALTNIQTPILSFRYFCSQASSSSAPSSSPSAPNNKLFVAGLSWSMDERSLK 65
           N + LL R+     Q  I S  +F  Q  +SS+ S     P++KLF+ GLSWS+DE+SLK
Sbjct: 4   NGIELLVRRVSAIPQHSISSSFHFLPQFCTSSSAS-----PSSKLFIGGLSWSVDEQSLK 63

Query: 66  DAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNENDAQCAKDAMDGKA-SRRPLRISFAL 125
           DAFSSFGEV EVRI YDK SGRSRGFGFV+F  E DA  AKDAMDGK    RPLRISFAL
Sbjct: 64  DAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDAMDGKGLLGRPLRISFAL 123

Query: 126 DKVRGGPVVIPRL 138
           ++VRGGPVV+PRL
Sbjct: 124 ERVRGGPVVVPRL 131

[Close]

BLAST of ClCG02G010060 vs. TAIR10
Match: AT3G23830.1 (AT3G23830.1 glycine-rich RNA-binding protein 4)

HSP 1 Score: 86.3 bits (212), Expect = 1.8e-17
Identity = 42/81 (51.85%), Postives = 58/81 (71.60%), Query Frame = 1


Query: 47  NNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNENDAQCAK 106
           ++KLFV GLSW  D+ SLK AF+SFGEVTE  ++ D+++GRSRGFGFV+F+ E+ A  A 
Sbjct: 34  SSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAI 93

Query: 107 DAMDGK-ASRRPLRISFALDK 127
             MDGK  + R +R++ A ++
Sbjct: 94  KEMDGKELNGRQIRVNLATER 114

[Close]

BLAST of ClCG02G010060 vs. TAIR10
Match: AT5G61030.1 (AT5G61030.1 glycine-rich RNA-binding protein 3)

HSP 1 Score: 85.5 bits (210), Expect = 3.1e-17
Identity = 38/85 (44.71%), Postives = 61/85 (71.76%), Query Frame = 1


Query: 47  NNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNENDAQCAK 106
           ++KLF+ G+++SMDE SL++AF+ +GEV + R++ D+++GRSRGFGFV FT+   A  A 
Sbjct: 39  SSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAI 98

Query: 107 DAMDGK-ASRRPLRISFALDKVRGG 131
            A+DG+    R +++++A D+  GG
Sbjct: 99  QALDGRDLHGRVVKVNYANDRTSGG 123

[Close]

BLAST of ClCG02G010060 vs. TAIR10
Match: AT4G13850.1 (AT4G13850.1 glycine-rich RNA-binding protein 2)

HSP 1 Score: 84.0 bits (206), Expect = 8.9e-17
Identity = 39/81 (48.15%), Postives = 56/81 (69.14%), Query Frame = 1


Query: 47  NNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNENDAQCAK 106
           + KLF+ GLSW  D+ SL+DAF+ FG+V + +++ D+++GRSRGFGFVNF +E  A  A 
Sbjct: 34  STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 93

Query: 107 DAMDGK-ASRRPLRISFALDK 127
             MDGK  + R +R++ A D+
Sbjct: 94  SEMDGKELNGRHIRVNPANDR 114

[Close]

BLAST of ClCG02G010060 vs. TAIR10
Match: AT5G47320.1 (AT5G47320.1 ribosomal protein S19)

HSP 1 Score: 77.8 bits (190), Expect = 6.4e-15
Identity = 38/66 (57.58%), Postives = 47/66 (71.21%), Query Frame = 1


Query: 47  NNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNENDAQCAK 106
           + KL++ GLS   DE SLKDAFSSF  VTE R+M +K +GRSRG+GFVNF +E+ A  A 
Sbjct: 30  STKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAI 89

Query: 107 DAMDGK 113
            AM+G+
Sbjct: 90  SAMNGQ 95

[Close]

BLAST of ClCG02G010060 vs. NCBI nr
Match: gi|659111830|ref|XP_008455929.1| (PREDICTED: glycine-rich RNA-binding protein 3, mitochondrial [Cucumis melo])

HSP 1 Score: 244.6 bits (623), Expect = 1.1e-61
Identity = 125/148 (84.46%), Postives = 137/148 (92.57%), Query Frame = 1


Query: 1   MMSNMNTLILLGRKALTNIQTPILSFRYFCSQASSSSAPSSSPSAPNNKLFVAGLSWSMD 60
           MMSN NTL+LL RKALTNIQTPIL+FR FCSQ  S+SA SSSPSAP+NKLFVAGLSWSMD
Sbjct: 18  MMSNTNTLLLLARKALTNIQTPILTFRCFCSQ--STSALSSSPSAPSNKLFVAGLSWSMD 77

Query: 61  ERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNENDAQCAKDAMDGKA-SRRPLR 120
           ERSLKDAFSSFGEVTEVRI+YDKDSGRSRGFGFV+F NENDAQCAKDAMDGKA   RPL+
Sbjct: 78  ERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVDFANENDAQCAKDAMDGKAVLGRPLK 137

Query: 121 ISFALDKVRGGPVVIPRLSNVNNMVGQR 148
           ISFAL+KVRGGPV +PRLSN+NN+VG+R
Sbjct: 138 ISFALEKVRGGPVAVPRLSNINNLVGRR 163

[Close]

BLAST of ClCG02G010060 vs. NCBI nr
Match: gi|700208100|gb|KGN63219.1| (hypothetical protein Csa_2G416100 [Cucumis sativus])

HSP 1 Score: 239.6 bits (610), Expect = 3.6e-60
Identity = 123/151 (81.46%), Postives = 132/151 (87.42%), Query Frame = 1


Query: 2   MSNMNTLILLGRKALTNIQTPILSFRYFCSQASSSSAPSSSPSAPNNKLFVAGLSWSMDE 61
           MSN NT +LL RKALTNIQTP L FR FCSQ++S   P SS  +PNNKLFVAGLSWSMDE
Sbjct: 1   MSNTNTFLLLARKALTNIQTPFLGFRCFCSQSTS---PLSSSPSPNNKLFVAGLSWSMDE 60

Query: 62  RSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNENDAQCAKDAMDGKA-SRRPLRI 121
           RSLKDAFSSFGEVTEVRI+YDKDSGRSRGFGFVNF N NDAQCAKDAMDGKA   RPLRI
Sbjct: 61  RSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANGNDAQCAKDAMDGKAVLGRPLRI 120

Query: 122 SFALDKVRGGPVVIPRLSNVNNMVGQRCGNQ 152
           SFALDKVRG PVV+PRLSN+NN+VG+R GNQ
Sbjct: 121 SFALDKVRGEPVVVPRLSNINNLVGRRYGNQ 148

[Close]

BLAST of ClCG02G010060 vs. NCBI nr
Match: gi|449468384|ref|XP_004151901.1| (PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial-like [Cucumis sativus])

HSP 1 Score: 233.8 bits (595), Expect = 2.0e-58
Identity = 120/147 (81.63%), Postives = 129/147 (87.76%), Query Frame = 1


Query: 2   MSNMNTLILLGRKALTNIQTPILSFRYFCSQASSSSAPSSSPSAPNNKLFVAGLSWSMDE 61
           MSN NT +LL RKALTNIQTP L FR FCSQ++S   P SS  +PNNKLFVAGLSWSMDE
Sbjct: 1   MSNTNTFLLLARKALTNIQTPFLGFRCFCSQSTS---PLSSSPSPNNKLFVAGLSWSMDE 60

Query: 62  RSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNENDAQCAKDAMDGKA-SRRPLRI 121
           RSLKDAFSSFGEVTEVRI+YDKDSGRSRGFGFVNF N NDAQCAKDAMDGKA   RPLRI
Sbjct: 61  RSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANGNDAQCAKDAMDGKAVLGRPLRI 120

Query: 122 SFALDKVRGGPVVIPRLSNVNNMVGQR 148
           SFALDKVRG PVV+PRLSN+NN+VG+R
Sbjct: 121 SFALDKVRGEPVVVPRLSNINNLVGRR 144

[Close]

BLAST of ClCG02G010060 vs. NCBI nr
Match: gi|1009158381|ref|XP_015897259.1| (PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial [Ziziphus jujuba])

HSP 1 Score: 181.8 bits (460), Expect = 8.9e-43
Identity = 95/134 (70.90%), Postives = 110/134 (82.09%), Query Frame = 1


Query: 10  LLGRKALTNIQTPILSFRYFCSQASSSSAPSSSPSAPNNKLFVAGLSWSMDERSLKDAFS 69
           ++ R+A T I  P LS+R + S  SSSS PS      N+KLFV GLSWS+DE+SLKDAFS
Sbjct: 8   IIFRRASTTIHNPTLSWRCYFSPPSSSSPPS------NSKLFVGGLSWSVDEKSLKDAFS 67

Query: 70  SFGEVTEVRIMYDKDSGRSRGFGFVNFTNENDAQCAKDAMDGKA-SRRPLRISFALDKVR 129
           SFGEVTEVRI+YDKDSGRSRGFGFV+F+ ENDA+CAKDAMDGKA   RPLRISFA DKVR
Sbjct: 68  SFGEVTEVRILYDKDSGRSRGFGFVHFSMENDAKCAKDAMDGKAFLGRPLRISFAFDKVR 127

Query: 130 GGPVVIPRLSNVNN 143
           GGPVVIPRL+N+ +
Sbjct: 128 GGPVVIPRLTNIED 135

[Close]

BLAST of ClCG02G010060 vs. NCBI nr
Match: gi|658013638|ref|XP_008342125.1| (PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial-like [Malus domestica])

HSP 1 Score: 176.4 bits (446), Expect = 3.7e-41
Identity = 93/139 (66.91%), Postives = 111/139 (79.86%), Query Frame = 1


Query: 2   MSNMNTLILLGRKALTNI--QTPILSFRYFCSQASSSSAPSSSPSAPNNKLFVAGLSWSM 61
           M N     LL R+A T I  Q P LS R+FC+  SSSS+ SS P  PNN+LFV GLSWS+
Sbjct: 4   MRNNTLWTLLARRASTTITIQNPTLSRRFFCAPPSSSSSSSSPP--PNNRLFVGGLSWSV 63

Query: 62  DERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNENDAQCAKDAMDGKA-SRRPL 121
           DE+SLKDAFSSFGEVTEV+I+YD+DSGRSRGFGFVNF+ E++AQ AKDAMDGKA   RPL
Sbjct: 64  DEKSLKDAFSSFGEVTEVKIVYDRDSGRSRGFGFVNFSKEDEAQVAKDAMDGKALLGRPL 123

Query: 122 RISFALDKVRGGPVVIPRL 138
           R++ A++KVRGGP V+PRL
Sbjct: 124 RVTSAVEKVRGGPAVVPRL 140

The following BLAST results are available for this feature:

BLAST of ClCG02G010060 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RBG4_ARATH	3.2e-16	51.85	Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis thaliana GN=RBG...	[more]
RBG3_ARATH	5.4e-16	44.71	Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis thaliana GN=RBG...	[more]
RBG2_ARATH	1.6e-15	48.15	Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana GN=RBG...	[more]
RBM3_CAPHI	6.6e-14	45.98	RNA-binding protein 3 OS=Capra hircus GN=RBM3 PE=2 SV=2	[more]
RT19_ARATH	1.1e-13	57.58	40S ribosomal protein S19, mitochondrial OS=Arabidopsis thaliana GN=RPS19 PE=1 S...	[more]

BLAST of ClCG02G010060 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQB7_CUCSA	2.5e-60	81.46	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G416100 PE=4 SV=1	[more]
W9QHY3_9ROSA	3.4e-41	66.44	Glycine-rich RNA-binding protein 2 OS=Morus notabilis GN=L484_004070 PE=4 SV=1	[more]
D7TEC9_VITVI	2.4e-39	66.67	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0059g01210 PE=4 SV=...	[more]
A0A061DMK3_THECC	9.3e-39	71.19	RNA-binding family protein isoform 1 OS=Theobroma cacao GN=TCM_002154 PE=4 SV=1	[more]
B9SH52_RICCO	1.6e-38	72.88	Glycine-rich RNA-binding protein, putative OS=Ricinus communis GN=RCOM_1116940 P...	[more]

BLAST of ClCG02G010060 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G08000.1	2.9e-36	62.41	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G23830.1	1.8e-17	51.85	glycine-rich RNA-binding protein 4	[more]
AT5G61030.1	3.1e-17	44.71	glycine-rich RNA-binding protein 3	[more]
AT4G13850.1	8.9e-17	48.15	glycine-rich RNA-binding protein 2	[more]
AT5G47320.1	6.4e-15	57.58	ribosomal protein S19	[more]

BLAST of ClCG02G010060 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659111830\|ref\|XP_008455929.1\|	1.1e-61	84.46	PREDICTED: glycine-rich RNA-binding protein 3, mitochondrial [Cucumis melo]	[more]
gi\|700208100\|gb\|KGN63219.1\|	3.6e-60	81.46	hypothetical protein Csa_2G416100 [Cucumis sativus]	[more]
gi\|449468384\|ref\|XP_004151901.1\|	2.0e-58	81.63	PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial-like [Cucumis sativ...	[more]
gi\|1009158381\|ref\|XP_015897259.1\|	8.9e-43	70.90	PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial [Ziziphus jujuba]	[more]
gi\|658013638\|ref\|XP_008342125.1\|	3.7e-41	66.91	PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial-like [Malus domesti...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0000166	nucleotide binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG02G010060.1	ClCG02G010060.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 50..112 score: 3.0
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 49..121 score: 1.2
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 48..125 score: 19
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 31..128 score: 1.9
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 31..131 score: 7.12
None	No IPR available	PANTHER	PTHR24012	FAMILY NOT NAMED	coord: 47..126 score: 2.1E-24coord: 1..6 score: 2.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG02G010060	Csa2G416100	Cucumber (Chinese Long) v2	cuwcgB130
ClCG02G010060	MELO3C019305	Melon (DHL92) v3.5.1	mewcgB099
ClCG02G010060	Cla001596	Watermelon (97103) v1	wcgwmB213
ClCG02G010060	Cla97C02G036190	Watermelon (97103) v2	wcgwmbB138
ClCG02G010060	Bhi10G001083	Wax gourd	wcgwgoB307
ClCG02G010060	CSPI02G26140	Wild cucumber (PI 183967)	cpiwcgB135
ClCG02G010060	Cucsa.309370	Cucumber (Gy14) v1	cgywcgB533
ClCG02G010060	CmaCh20G005920	Cucurbita maxima (Rimu)	cmawcgB501
ClCG02G010060	CmoCh20G006450	Cucurbita moschata (Rifu)	cmowcgB487
ClCG02G010060	Lsi10G000990	Bottle gourd (USVL1VR-Ls)	lsiwcgB061
ClCG02G010060	CsGy2G025740	Cucumber (Gy14) v2	cgybwcgB124
ClCG02G010060	MELO3C019305.2	Melon (DHL92) v3.6.1	medwcgB096
ClCG02G010060	Carg03117	Silver-seed gourd	carwcgB0330
ClCG02G010060	CsaV3_2G034630	Cucumber (Chinese Long) v3	cucwcgB142

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG02G010060	Bottle gourd (USVL1VR-Ls)	lsiwcgB053
ClCG02G010060	Wax gourd	wcgwgoB297