Cucsa.286430 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.286430
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
Description60S ribosomal protein L27A
Locationscaffold02653 : 2483280 .. 2484077 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCATTCCATCTCCTCCGAGCAGCCGAAACCCTAGGGTGTGTGTGTGTGAGAGAGAGGGAGAGATCCGCCATGACGACTCGTTTCAAGAAGAACAGGAAGAAGAGAGGACATGTCAGTGCTGGACATGGTAGAATCGGCAAACACCGAAAGCATCCTGGTGGTCGGGGAAACGCTGGAGGTATGCACCACCACAGGATTCTCTTCGATAAGTATCATCCTGGTTATTTCGGTAAAGTTGGTATGCGTTATTTCCACAAGCTTCGCAACAAGTTCTATTGCCCGATTGTAAACGTCGACAAGATCTGGTCATTGATCCCTCAAGAAGTGAAGGATAAAGCCTCCAAAGACAACGTTCCATTGGTCGATGTTACGCAGTTCGGATATTTCAAGGTTTTGGGCAAGGGTGTCTTACCGGAGAATCAGCCTATTGTGGTGAAGGCCAAGCTTGTGTCCAAGATCGCCGAGAAGAAGATTAAGGAGGCTGGCGGCGCGGTGGTTCTTACAGCTTAGGTTTGAGTTTCTCTTCGTTATAGAGATTTTTGTTCTTGGTGAATTTTCATTTTTGTCTGTTTGAACTTATTGAACTTCTTTTTTCTTATATAATTTAAAGCTTTTTATGGGTCCATATTCTAATATCTGGTGCTACGTTCAAGCTCTGTTCTTACTCAATTAGTGTTTAATTCTTAGACTATGCAAGAGGAATACATGGTTGATTGAACTATTAAGCGTAGTGCAATAAGAAAGTGTACTAAAACTTTGATGGCACCATATTTCTTTCAACATTGATTCGATGGAGTC

mRNA sequence

TCATTCCATCTCCTCCGAGCAGCCGAAACCCTAGGGTGTGTGTGTGTGAGAGAGAGGGAGAGATCCGCCATGACGACTCGTTTCAAGAAGAACAGGAAGAAGAGAGGACATGTCAGTGCTGGACATGGTAGAATCGGCAAACACCGAAAGCATCCTGGTGGTCGGGGAAACGCTGGAGGTATGCACCACCACAGGATTCTCTTCGATAAGTATCATCCTGGTTATTTCGGTAAAGTTGGTATGCGTTATTTCCACAAGCTTCGCAACAAGTTCTATTGCCCGATTGTAAACGTCGACAAGATCTGGTCATTGATCCCTCAAGAAGTGAAGGATAAAGCCTCCAAAGACAACGTTCCATTGGTCGATGTTACGCAGTTCGGATATTTCAAGGTTTTGGGCAAGGGTGTCTTACCGGAGAATCAGCCTATTGTGGTGAAGGCCAAGCTTGTGTCCAAGATCGCCGAGAAGAAGATTAAGGAGGCTGGCGGCGCGGTGGTTCTTACAGCTTAGGTTTGAGTTTCTCTTCGTTATAGAGATTTTTGTTCTTGGTGAATTTTCATTTTTGTCTGTTTGAACTTATTGAACTTCTTTTTTCTTATATAATTTAAAGCTTTTTATGGGTCCATATTCTAATATCTGGTGCTACGTTCAAGCTCTGTTCTTACTCAATTAGTGTTTAATTCTTAGACTATGCAAGAGGAATACATGGTTGATTGAACTATTAAGCGTAGTGCAATAAGAAAGTGTACTAAAACTTTGATGGCACCATATTTCTTTCAACATTGATTCGATGGAGTC

Coding sequence (CDS)

ATGACGACTCGTTTCAAGAAGAACAGGAAGAAGAGAGGACATGTCAGTGCTGGACATGGTAGAATCGGCAAACACCGAAAGCATCCTGGTGGTCGGGGAAACGCTGGAGGTATGCACCACCACAGGATTCTCTTCGATAAGTATCATCCTGGTTATTTCGGTAAAGTTGGTATGCGTTATTTCCACAAGCTTCGCAACAAGTTCTATTGCCCGATTGTAAACGTCGACAAGATCTGGTCATTGATCCCTCAAGAAGTGAAGGATAAAGCCTCCAAAGACAACGTTCCATTGGTCGATGTTACGCAGTTCGGATATTTCAAGGTTTTGGGCAAGGGTGTCTTACCGGAGAATCAGCCTATTGTGGTGAAGGCCAAGCTTGTGTCCAAGATCGCCGAGAAGAAGATTAAGGAGGCTGGCGGCGCGGTGGTTCTTACAGCTTAG

Protein sequence

MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPIVVKAKLVSKIAEKKIKEAGGAVVLTA*
Homology
[Close]
BLAST of Cucsa.286430 vs. Swiss-Prot
Match: R27A3_ARATH (60S ribosomal protein L27a-3 OS=Arabidopsis thaliana GN=RPL27AC PE=2 SV=2)

HSP 1 Score: 282.0 bits (720), Expect = 3.9e-75
Identity = 129/146 (88.36%), Postives = 141/146 (96.58%), Query Frame = 1 

Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI 120
           FHKLRNKF+CPIVN+DK+WSL+P++VK K++KDNVPL+DVTQ G+FKVLGKG LPEN+P 
Sbjct: 61  FHKLRNKFFCPIVNLDKLWSLVPEDVKAKSTKDNVPLIDVTQHGFFKVLGKGHLPENKPF 120

Query: 121 VVKAKLVSKIAEKKIKEAGGAVVLTA 147
           VVKAKL+SK AEKKIKEAGGAVVLTA
Sbjct: 121 VVKAKLISKTAEKKIKEAGGAVVLTA 146

[Close]
BLAST of Cucsa.286430 vs. Swiss-Prot
Match: R27A2_ARATH (60S ribosomal protein L27a-2 OS=Arabidopsis thaliana GN=RPL27AB PE=2 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 1.6e-73
Identity = 127/146 (86.99%), Postives = 138/146 (94.52%), Query Frame = 1 

Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           M T  KKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MATALKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI 120
           FHKLRNKF+CPIVN+DK+WSL+P++VK K+SKDNVPL+DVTQ G+FKVLGKG LPEN+P 
Sbjct: 61  FHKLRNKFFCPIVNLDKLWSLVPEDVKAKSSKDNVPLIDVTQHGFFKVLGKGHLPENKPF 120

Query: 121 VVKAKLVSKIAEKKIKEAGGAVVLTA 147
           VVKAKL+SK AEKKIKEAGGAVVLTA
Sbjct: 121 VVKAKLISKTAEKKIKEAGGAVVLTA 146

[Close]
BLAST of Cucsa.286430 vs. Swiss-Prot
Match: RL27A_DICDI (60S ribosomal protein L27a OS=Dictyostelium discoideum GN=rpl27a PE=3 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 5.4e-53
Identity = 96/149 (64.43%), Postives = 120/149 (80.54%), Query Frame = 1 

Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           M TRF K+RK RG V AG+GR+GKHRKHPGGRGNAGG+ HHRI FDKYHPGYFGK+GMR+
Sbjct: 1   MPTRFSKHRKSRGDVCAGYGRVGKHRKHPGGRGNAGGLTHHRINFDKYHPGYFGKLGMRH 60

Query: 61  FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDN---VPLVDVTQFGYFKVLGKGVLPEN 120
           FH LRN+++CP V+++KIW+L+P+ V+   +  N    P+VDVTQ G+FKVLG G+LP  
Sbjct: 61  FHLLRNQYHCPTVSLEKIWTLVPESVRKSLAAKNDGTAPVVDVTQKGFFKVLGHGILP-T 120

Query: 121 QPIVVKAKLVSKIAEKKIKEAGGAVVLTA 147
           QPI+VKA+  SK+AEKKIK  GGA +L A
Sbjct: 121 QPIIVKARYFSKVAEKKIKAVGGACILVA 148

[Close]
BLAST of Cucsa.286430 vs. Swiss-Prot
Match: RL27A_OSCTI (60S ribosomal protein L27a OS=Oscheius tipulae GN=rpl-27a PE=3 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 1.2e-52
Identity = 96/146 (65.75%), Postives = 112/146 (76.71%), Query Frame = 1 

Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           M    +K RK RGHVS GHGRIGKHRKHPGGRGNAGG HHHRI  DKYHPGYFGKVGMR 
Sbjct: 1   MAHSLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGQHHHRINRDKYHPGYFGKVGMRV 60

Query: 61  FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI 120
           FH  +N  YCP VNVD++W+L+P+E K K S +  P++D  + GYFKVLGKG+LP+ QP+
Sbjct: 61  FHLNKNHHYCPTVNVDRLWALVPEEQKTKVSAEKAPVIDCVKAGYFKVLGKGLLPK-QPL 120

Query: 121 VVKAKLVSKIAEKKIKEAGGAVVLTA 147
           +VKAK  S  AE KIK AGGA +L A
Sbjct: 121 IVKAKFFSHEAENKIKAAGGACILVA 145

[Close]
BLAST of Cucsa.286430 vs. Swiss-Prot
Match: RL27A_MOUSE (60S ribosomal protein L27a OS=Mus musculus GN=Rpl27a PE=1 SV=5)

HSP 1 Score: 206.1 bits (523), Expect = 2.7e-52
Identity = 95/149 (63.76%), Postives = 119/149 (79.87%), Query Frame = 1 

Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           M +R +K RK RGHVS GHGRIGKHRKHPGGRGNAGGMHHHRI FDKYHPGYFGKVGMR+
Sbjct: 1   MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRH 60

Query: 61  FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDN---VPLVDVTQFGYFKVLGKGVLPEN 120
           +H  RN+ +CP VN+DK+W+L+ ++ +  A+K+     P++DV + GY+KVLGKG LP+ 
Sbjct: 61  YHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGVAPIIDVVRSGYYKVLGKGKLPK- 120

Query: 121 QPIVVKAKLVSKIAEKKIKEAGGAVVLTA 147
           QP++VKAK  S+ AE+KIK  GGA VL A
Sbjct: 121 QPVIVKAKFFSRRAEEKIKGVGGACVLVA 148

[Close]
BLAST of Cucsa.286430 vs. TrEMBL
Match: A0A0A0KQ56_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G598710 PE=3 SV=1)

HSP 1 Score: 306.2 bits (783), Expect = 2.1e-80
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 1 

Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI 120
           FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI
Sbjct: 61  FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI 120

Query: 121 VVKAKLVSKIAEKKIKEAGGAVVLTA 147
           VVKAKLVSKIAEKKIKEAGGAVVLTA
Sbjct: 121 VVKAKLVSKIAEKKIKEAGGAVVLTA 146

[Close]
BLAST of Cucsa.286430 vs. TrEMBL
Match: W9RTX6_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_000089 PE=3 SV=1)

HSP 1 Score: 302.0 bits (772), Expect = 4.0e-79
Identity = 139/146 (95.21%), Postives = 146/146 (100.00%), Query Frame = 1 

Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI 120
           FHKLRNKFYCPIVN+DK+WS++PQ+VKDKASKDNVPL+DVTQFGYFKVLGKGVLPENQP+
Sbjct: 61  FHKLRNKFYCPIVNIDKLWSMVPQDVKDKASKDNVPLIDVTQFGYFKVLGKGVLPENQPV 120

Query: 121 VVKAKLVSKIAEKKIKEAGGAVVLTA 147
           VVKAKLVSKIAEKKIKEAGGAVVLTA
Sbjct: 121 VVKAKLVSKIAEKKIKEAGGAVVLTA 146

[Close]
BLAST of Cucsa.286430 vs. TrEMBL
Match: A0A067KGS0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11415 PE=3 SV=1)

HSP 1 Score: 301.2 bits (770), Expect = 6.8e-79
Identity = 142/146 (97.26%), Postives = 144/146 (98.63%), Query Frame = 1 

Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI 120
           FHKLRNKFYCPIVN+DK+WSLIPQEVKDKASKDN PLVDVTQFGYFKVLGKGVLPENQPI
Sbjct: 61  FHKLRNKFYCPIVNIDKLWSLIPQEVKDKASKDNAPLVDVTQFGYFKVLGKGVLPENQPI 120

Query: 121 VVKAKLVSKIAEKKIKEAGGAVVLTA 147
           VVKAKLVSKIAEKKIKE GGAVVLTA
Sbjct: 121 VVKAKLVSKIAEKKIKENGGAVVLTA 146

[Close]
BLAST of Cucsa.286430 vs. TrEMBL
Match: A0A067K4E2_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17812 PE=3 SV=1)

HSP 1 Score: 300.4 bits (768), Expect = 1.2e-78
Identity = 140/146 (95.89%), Postives = 144/146 (98.63%), Query Frame = 1 

Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI 120
           FHKLRNKFYCPIVN+DK+WSLIPQE KDKASKDNVPL+DVTQFGYFKVLGKGVLPENQPI
Sbjct: 61  FHKLRNKFYCPIVNIDKLWSLIPQEAKDKASKDNVPLLDVTQFGYFKVLGKGVLPENQPI 120

Query: 121 VVKAKLVSKIAEKKIKEAGGAVVLTA 147
            VKAKLVSKIAEKKIKEAGGAV+LTA
Sbjct: 121 AVKAKLVSKIAEKKIKEAGGAVILTA 146

[Close]
BLAST of Cucsa.286430 vs. TrEMBL
Match: A0A0A0LQZ7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G046840 PE=3 SV=1)

HSP 1 Score: 300.1 bits (767), Expect = 1.5e-78
Identity = 139/146 (95.21%), Postives = 145/146 (99.32%), Query Frame = 1 

Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI 120
           FHKLRNKFYCPIVNVDK+WSL+PQEVKDKASKDNVPL+DVTQFGYFKVLGKGVLPEN+P+
Sbjct: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFGYFKVLGKGVLPENKPV 120

Query: 121 VVKAKLVSKIAEKKIKEAGGAVVLTA 147
           VVKAKL+SKIAEKKIKE GGAVVLTA
Sbjct: 121 VVKAKLISKIAEKKIKENGGAVVLTA 146

[Close]
BLAST of Cucsa.286430 vs. TAIR10
Match: AT1G70600.1 (AT1G70600.1 Ribosomal protein L18e/L15 superfamily protein)

HSP 1 Score: 282.0 bits (720), Expect = 2.2e-76
Identity = 129/146 (88.36%), Postives = 141/146 (96.58%), Query Frame = 1 

Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI 120
           FHKLRNKF+CPIVN+DK+WSL+P++VK K++KDNVPL+DVTQ G+FKVLGKG LPEN+P 
Sbjct: 61  FHKLRNKFFCPIVNLDKLWSLVPEDVKAKSTKDNVPLIDVTQHGFFKVLGKGHLPENKPF 120

Query: 121 VVKAKLVSKIAEKKIKEAGGAVVLTA 147
           VVKAKL+SK AEKKIKEAGGAVVLTA
Sbjct: 121 VVKAKLISKTAEKKIKEAGGAVVLTA 146

[Close]
BLAST of Cucsa.286430 vs. TAIR10
Match: AT1G23290.1 (AT1G23290.1 Ribosomal protein L18e/L15 superfamily protein)

HSP 1 Score: 276.6 bits (706), Expect = 9.1e-75
Identity = 127/146 (86.99%), Postives = 138/146 (94.52%), Query Frame = 1 

Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           M T  KKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MATALKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI 120
           FHKLRNKF+CPIVN+DK+WSL+P++VK K+SKDNVPL+DVTQ G+FKVLGKG LPEN+P 
Sbjct: 61  FHKLRNKFFCPIVNLDKLWSLVPEDVKAKSSKDNVPLIDVTQHGFFKVLGKGHLPENKPF 120

Query: 121 VVKAKLVSKIAEKKIKEAGGAVVLTA 147
           VVKAKL+SK AEKKIKEAGGAVVLTA
Sbjct: 121 VVKAKLISKTAEKKIKEAGGAVVLTA 146

[Close]
BLAST of Cucsa.286430 vs. TAIR10
Match: AT1G12960.1 (AT1G12960.1 Ribosomal protein L18e/L15 superfamily protein)

HSP 1 Score: 138.3 bits (347), Expect = 3.9e-33
Identity = 79/145 (54.48%), Postives = 84/145 (57.93%), Query Frame = 1 

Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTT  KK R  R HVS GHGR GKHRK PG RGNAG                   VGMRY
Sbjct: 1   MTTSRKKTRNLREHVSVGHGRFGKHRKLPGSRGNAG-------------------VGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI 120
           FHKLRNKFYC IVN+DK+WS+                          VLGKG LPEN+P+
Sbjct: 61  FHKLRNKFYCQIVNLDKLWSM--------------------------VLGKGFLPENKPV 100

Query: 121 VVKAKLVSKIAEKKIKEAGGAVVLT 146
           VVKAKLVS   EKKIKEAG AVVLT
Sbjct: 121 VVKAKLVSNTDEKKIKEAGSAVVLT 100

[Close]
BLAST of Cucsa.286430 vs. NCBI nr
Match: gi|449434971|ref|XP_004135269.1| (PREDICTED: 60S ribosomal protein L27a-3 [Cucumis sativus])

HSP 1 Score: 306.2 bits (783), Expect = 3.0e-80
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 1 

Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI 120
           FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI
Sbjct: 61  FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI 120

Query: 121 VVKAKLVSKIAEKKIKEAGGAVVLTA 147
           VVKAKLVSKIAEKKIKEAGGAVVLTA
Sbjct: 121 VVKAKLVSKIAEKKIKEAGGAVVLTA 146

[Close]
BLAST of Cucsa.286430 vs. NCBI nr
Match: gi|703122062|ref|XP_010102488.1| (hypothetical protein L484_014543 [Morus notabilis])

HSP 1 Score: 302.0 bits (772), Expect = 5.8e-79
Identity = 139/146 (95.21%), Postives = 146/146 (100.00%), Query Frame = 1 

Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI 120
           FHKLRNKFYCPIVN+DK+WS++PQ+VKDKASKDNVPL+DVTQFGYFKVLGKGVLPENQP+
Sbjct: 61  FHKLRNKFYCPIVNIDKLWSMVPQDVKDKASKDNVPLIDVTQFGYFKVLGKGVLPENQPV 120

Query: 121 VVKAKLVSKIAEKKIKEAGGAVVLTA 147
           VVKAKLVSKIAEKKIKEAGGAVVLTA
Sbjct: 121 VVKAKLVSKIAEKKIKEAGGAVVLTA 146

[Close]
BLAST of Cucsa.286430 vs. NCBI nr
Match: gi|659067312|ref|XP_008438796.1| (PREDICTED: 60S ribosomal protein L27a-3-like [Cucumis melo])

HSP 1 Score: 301.6 bits (771), Expect = 7.5e-79
Identity = 140/146 (95.89%), Postives = 145/146 (99.32%), Query Frame = 1 

Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI 120
           FHKLRNKFYCPIVNVDK+WSL+PQEVKDKASKDNVPL+DVTQFGYFKVLGKGVLPENQP+
Sbjct: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFGYFKVLGKGVLPENQPV 120

Query: 121 VVKAKLVSKIAEKKIKEAGGAVVLTA 147
           VVKAKL+SKIAEKKIKE GGAVVLTA
Sbjct: 121 VVKAKLISKIAEKKIKENGGAVVLTA 146

[Close]
BLAST of Cucsa.286430 vs. NCBI nr
Match: gi|802650546|ref|XP_012079990.1| (PREDICTED: 60S ribosomal protein L27a-3-like [Jatropha curcas])

HSP 1 Score: 301.2 bits (770), Expect = 9.8e-79
Identity = 142/146 (97.26%), Postives = 144/146 (98.63%), Query Frame = 1 

Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI 120
           FHKLRNKFYCPIVN+DK+WSLIPQEVKDKASKDN PLVDVTQFGYFKVLGKGVLPENQPI
Sbjct: 61  FHKLRNKFYCPIVNIDKLWSLIPQEVKDKASKDNAPLVDVTQFGYFKVLGKGVLPENQPI 120

Query: 121 VVKAKLVSKIAEKKIKEAGGAVVLTA 147
           VVKAKLVSKIAEKKIKE GGAVVLTA
Sbjct: 121 VVKAKLVSKIAEKKIKENGGAVVLTA 146

[Close]
BLAST of Cucsa.286430 vs. NCBI nr
Match: gi|802722472|ref|XP_012085480.1| (PREDICTED: 60S ribosomal protein L27a-3 [Jatropha curcas])

HSP 1 Score: 300.4 bits (768), Expect = 1.7e-78
Identity = 140/146 (95.89%), Postives = 144/146 (98.63%), Query Frame = 1 

Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI 120
           FHKLRNKFYCPIVN+DK+WSLIPQE KDKASKDNVPL+DVTQFGYFKVLGKGVLPENQPI
Sbjct: 61  FHKLRNKFYCPIVNIDKLWSLIPQEAKDKASKDNVPLLDVTQFGYFKVLGKGVLPENQPI 120

Query: 121 VVKAKLVSKIAEKKIKEAGGAVVLTA 147
            VKAKLVSKIAEKKIKEAGGAV+LTA
Sbjct: 121 AVKAKLVSKIAEKKIKEAGGAVILTA 146

The following BLAST results are available for this feature:
BLAST of Cucsa.286430 vs. Swiss-Prot
Match NameE-valueIdentityDescription
R27A3_ARATH3.9e-7588.3660S ribosomal protein L27a-3 OS=Arabidopsis thaliana GN=RPL27AC PE=2 SV=2[more]
R27A2_ARATH1.6e-7386.9960S ribosomal protein L27a-2 OS=Arabidopsis thaliana GN=RPL27AB PE=2 SV=1[more]
RL27A_DICDI5.4e-5364.4360S ribosomal protein L27a OS=Dictyostelium discoideum GN=rpl27a PE=3 SV=1[more]
RL27A_OSCTI1.2e-5265.7560S ribosomal protein L27a OS=Oscheius tipulae GN=rpl-27a PE=3 SV=1[more]
RL27A_MOUSE2.7e-5263.7660S ribosomal protein L27a OS=Mus musculus GN=Rpl27a PE=1 SV=5[more]
BLAST of Cucsa.286430 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KQ56_CUCSA2.1e-80100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G598710 PE=3 SV=1[more]
W9RTX6_9ROSA4.0e-7995.21Uncharacterized protein OS=Morus notabilis GN=L484_000089 PE=3 SV=1[more]
A0A067KGS0_JATCU6.8e-7997.26Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11415 PE=3 SV=1[more]
A0A067K4E2_JATCU1.2e-7895.89Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17812 PE=3 SV=1[more]
A0A0A0LQZ7_CUCSA1.5e-7895.21Uncharacterized protein OS=Cucumis sativus GN=Csa_1G046840 PE=3 SV=1[more]
BLAST of Cucsa.286430 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G70600.12.2e-7688.36 Ribosomal protein L18e/L15 superfamily protein[more]
AT1G23290.19.1e-7586.99 Ribosomal protein L18e/L15 superfamily protein[more]
AT1G12960.13.9e-3354.48 Ribosomal protein L18e/L15 superfamily protein[more]
BLAST of Cucsa.286430 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449434971|ref|XP_004135269.1|3.0e-80100.00PREDICTED: 60S ribosomal protein L27a-3 [Cucumis sativus][more]
gi|703122062|ref|XP_010102488.1|5.8e-7995.21hypothetical protein L484_014543 [Morus notabilis][more]
gi|659067312|ref|XP_008438796.1|7.5e-7995.89PREDICTED: 60S ribosomal protein L27a-3-like [Cucumis melo][more]
gi|802650546|ref|XP_012079990.1|9.8e-7997.26PREDICTED: 60S ribosomal protein L27a-3-like [Jatropha curcas][more]
gi|802722472|ref|XP_012085480.1|1.7e-7895.89PREDICTED: 60S ribosomal protein L27a-3 [Jatropha curcas][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001196Ribosomal_L15_CS
IPR021131Ribosomal_L18e/L15P
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0015934large ribosomal subunit
GO:0005622intracellular
GO:0005840ribosome
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0015934 large ribosomal subunit
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.286430.1Cucsa.286430.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001196Ribosomal protein L15, conserved sitePROSITEPS00475RIBOSOMAL_L15coord: 107..139
scor
IPR021131Ribosomal protein L18e/L15PPFAMPF00828Ribosomal_L27Acoord: 28..143
score: 3.2
IPR021131Ribosomal protein L18e/L15PunknownSSF52080Ribosomal proteins L15p and L18ecoord: 6..145
score: 3.14
NoneNo IPR availableGENE3DG3DSA:3.100.10.10coord: 26..144
score: 4.4
NoneNo IPR availablePANTHERPTHR1172160S RIBOSOMAL PROTEIN L27Acoord: 1..146
score: 1.4E
NoneNo IPR availablePANTHERPTHR11721:SF6SUBFAMILY NOT NAMEDcoord: 1..146
score: 1.4E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.286430Cla010049Watermelon (97103) v1cgywmB524
Cucsa.286430Csa5G598710Cucumber (Chinese Long) v2cgycuB410
Cucsa.286430MELO3C002294Melon (DHL92) v3.5.1cgymeB477
Cucsa.286430MELO3C011956Melon (DHL92) v3.5.1cgymeB474
Cucsa.286430ClCG05G025700Watermelon (Charleston Gray)cgywcgB498
Cucsa.286430ClCG01G013450Watermelon (Charleston Gray)cgywcgB493
Cucsa.286430CSPI01G08770Wild cucumber (PI 183967)cgycpiB425
Cucsa.286430CSPI05G22320Wild cucumber (PI 183967)cgycpiB432
Cucsa.286430CmaCh18G007730Cucurbita maxima (Rimu)cgycmaB0799
Cucsa.286430CmaCh18G001880Cucurbita maxima (Rimu)cgycmaB0798
Cucsa.286430CmoCh18G007780Cucurbita moschata (Rifu)cgycmoB0790
Cucsa.286430CmoCh04G018520Cucurbita moschata (Rifu)cgycmoB0794
Cucsa.286430Lsi04G005850Bottle gourd (USVL1VR-Ls)cgylsiB465
Cucsa.286430Lsi02G004080Bottle gourd (USVL1VR-Ls)cgylsiB459
Cucsa.286430Cp4.1LG09g05190Cucurbita pepo (Zucchini)cgycpeB0744
Cucsa.286430Cp4.1LG01g15560Cucurbita pepo (Zucchini)cgycpeB0751
Cucsa.286430MELO3C011956.2Melon (DHL92) v3.6.1cgymedB471
Cucsa.286430MELO3C002294.2Melon (DHL92) v3.6.1cgymedB474
Cucsa.286430CsaV3_1G008800Cucumber (Chinese Long) v3cgycucB433
Cucsa.286430CsaV3_5G031180Cucumber (Chinese Long) v3cgycucB441
Cucsa.286430Cla97C05G107920Watermelon (97103) v2cgywmbB498
Cucsa.286430Bhi07G001428Wax gourdcgywgoB581
Cucsa.286430Bhi08G001344Wax gourdcgywgoB578
Cucsa.286430Carg14315Silver-seed gourdcarcgyB0288
Cucsa.286430Carg14492Silver-seed gourdcarcgyB0815
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cucsa.286430Cucsa.098720Cucumber (Gy14) v1cgycgyB039
The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.286430Melon (DHL92) v3.6.1cgymedB477
Cucsa.286430Silver-seed gourdcarcgyB0575
Cucsa.286430Silver-seed gourdcarcgyB0698
Cucsa.286430Cucumber (Chinese Long) v3cgycucB437
Cucsa.286430Watermelon (97103) v2cgywmbB501
Cucsa.286430Wax gourdcgywgoB576
Cucsa.286430Cucumber (Gy14) v1cgycgyB139
Cucsa.286430Cucurbita maxima (Rimu)cgycmaB0808
Cucsa.286430Cucurbita maxima (Rimu)cgycmaB0791
Cucsa.286430Cucurbita maxima (Rimu)cgycmaB0802
Cucsa.286430Cucurbita moschata (Rifu)cgycmoB0786
Cucsa.286430Cucurbita moschata (Rifu)cgycmoB0801
Cucsa.286430Wild cucumber (PI 183967)cgycpiB429
Cucsa.286430Cucumber (Chinese Long) v2cgycuB407
Cucsa.286430Melon (DHL92) v3.5.1cgymeB479
Cucsa.286430Watermelon (Charleston Gray)cgywcgB501
Cucsa.286430Cucurbita pepo (Zucchini)cgycpeB0746
Cucsa.286430Cucurbita pepo (Zucchini)cgycpeB0764
Cucsa.286430Bottle gourd (USVL1VR-Ls)cgylsiB468