CmoCh04G018520 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G018520
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Rib L27aB, component of cytosolic 80S ribosome and 60S large subunit
Location	Cmo_Chr04 : 9306955 .. 9307395 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGACTCGATTCAAGAAGAACAGGAAGAAGAGAGGACATGTCAGCGCCGGTCACGGTAGAATCGGCAAACACCGAAAGCATCCTGGAGGTCGGGGAAACGCCGGAGGTATGCACCACCATCGGATTCTCTTCGATAAGTATCACCCTGGTTATTTTGGTAAAGTTGGTATGCGTTACTTCCATAAGCTTCGCAACAAGTTCTATTGCCCGATTGTCAATGTTGACAAGATCTGGTCCTTGATCCCTCAAGAAGTGAAGGATAAGGCCTCCAAAGACAACGTTCCATTAGTCGATGTCACGCAGTTCGGTTATTTCAAGGTTTTGGGCAAGGGTGTGTTGCCGGAGAATCAGCCTATTGTGGTGAAGGCCAAGCTTGTATCCAAGATCGCCGAGAAGAAGATTAAGGAGGCCGGTGGCGCGGTGGTTCTTACAGCTTAG

mRNA sequence

ATGACGACTCGATTCAAGAAGAACAGGAAGAAGAGAGGACATGTCAGCGCCGGTCACGGTAGAATCGGCAAACACCGAAAGCATCCTGGAGGTCGGGGAAACGCCGGAGGTATGCACCACCATCGGATTCTCTTCGATAAGTATCACCCTGGTTATTTTGGTAAAGTTGGTATGCGTTACTTCCATAAGCTTCGCAACAAGTTCTATTGCCCGATTGTCAATGTTGACAAGATCTGGTCCTTGATCCCTCAAGAAGTGAAGGATAAGGCCTCCAAAGACAACGTTCCATTAGTCGATGTCACGCAGTTCGGTTATTTCAAGGTTTTGGGCAAGGGTGTGTTGCCGGAGAATCAGCCTATTGTGGTGAAGGCCAAGCTTGTATCCAAGATCGCCGAGAAGAAGATTAAGGAGGCCGGTGGCGCGGTGGTTCTTACAGCTTAG

Coding sequence (CDS)

ATGACGACTCGATTCAAGAAGAACAGGAAGAAGAGAGGACATGTCAGCGCCGGTCACGGTAGAATCGGCAAACACCGAAAGCATCCTGGAGGTCGGGGAAACGCCGGAGGTATGCACCACCATCGGATTCTCTTCGATAAGTATCACCCTGGTTATTTTGGTAAAGTTGGTATGCGTTACTTCCATAAGCTTCGCAACAAGTTCTATTGCCCGATTGTCAATGTTGACAAGATCTGGTCCTTGATCCCTCAAGAAGTGAAGGATAAGGCCTCCAAAGACAACGTTCCATTAGTCGATGTCACGCAGTTCGGTTATTTCAAGGTTTTGGGCAAGGGTGTGTTGCCGGAGAATCAGCCTATTGTGGTGAAGGCCAAGCTTGTATCCAAGATCGCCGAGAAGAAGATTAAGGAGGCCGGTGGCGCGGTGGTTCTTACAGCTTAG

Homology

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BLAST of CmoCh04G018520 vs. Swiss-Prot
Match: R27A3_ARATH (60S ribosomal protein L27a-3 OS=Arabidopsis thaliana GN=RPL27AC PE=2 SV=2)

HSP 1 Score: 271.9 bits (694), Expect = 4.0e-72
Identity = 129/146 (88.36%), Postives = 141/146 (96.58%), Query Frame = 1


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI 120
           FHKLRNKF+CPIVN+DK+WSL+P++VK K++KDNVPL+DVTQ G+FKVLGKG LPEN+P 
Sbjct: 61  FHKLRNKFFCPIVNLDKLWSLVPEDVKAKSTKDNVPLIDVTQHGFFKVLGKGHLPENKPF 120

Query: 121 VVKAKLVSKIAEKKIKEAGGAVVLTA 147
           VVKAKL+SK AEKKIKEAGGAVVLTA
Sbjct: 121 VVKAKLISKTAEKKIKEAGGAVVLTA 146

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BLAST of CmoCh04G018520 vs. Swiss-Prot
Match: R27A2_ARATH (60S ribosomal protein L27a-2 OS=Arabidopsis thaliana GN=RPL27AB PE=2 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 1.7e-70
Identity = 127/146 (86.99%), Postives = 138/146 (94.52%), Query Frame = 1


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           M T  KKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MATALKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI 120
           FHKLRNKF+CPIVN+DK+WSL+P++VK K+SKDNVPL+DVTQ G+FKVLGKG LPEN+P 
Sbjct: 61  FHKLRNKFFCPIVNLDKLWSLVPEDVKAKSSKDNVPLIDVTQHGFFKVLGKGHLPENKPF 120

Query: 121 VVKAKLVSKIAEKKIKEAGGAVVLTA 147
           VVKAKL+SK AEKKIKEAGGAVVLTA
Sbjct: 121 VVKAKLISKTAEKKIKEAGGAVVLTA 146

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BLAST of CmoCh04G018520 vs. Swiss-Prot
Match: RL27A_DICDI (60S ribosomal protein L27a OS=Dictyostelium discoideum GN=rpl27a PE=3 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 5.6e-50
Identity = 96/149 (64.43%), Postives = 120/149 (80.54%), Query Frame = 1


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           M TRF K+RK RG V AG+GR+GKHRKHPGGRGNAGG+ HHRI FDKYHPGYFGK+GMR+
Sbjct: 1   MPTRFSKHRKSRGDVCAGYGRVGKHRKHPGGRGNAGGLTHHRINFDKYHPGYFGKLGMRH 60

Query: 61  FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDN---VPLVDVTQFGYFKVLGKGVLPEN 120
           FH LRN+++CP V+++KIW+L+P+ V+   +  N    P+VDVTQ G+FKVLG G+LP  
Sbjct: 61  FHLLRNQYHCPTVSLEKIWTLVPESVRKSLAAKNDGTAPVVDVTQKGFFKVLGHGILP-T 120

Query: 121 QPIVVKAKLVSKIAEKKIKEAGGAVVLTA 147
           QPI+VKA+  SK+AEKKIK  GGA +L A
Sbjct: 121 QPIIVKARYFSKVAEKKIKAVGGACILVA 148

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BLAST of CmoCh04G018520 vs. Swiss-Prot
Match: RL27A_OSCTI (60S ribosomal protein L27a OS=Oscheius tipulae GN=rpl-27a PE=3 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 1.6e-49
Identity = 96/146 (65.75%), Postives = 112/146 (76.71%), Query Frame = 1


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           M    +K RK RGHVS GHGRIGKHRKHPGGRGNAGG HHHRI  DKYHPGYFGKVGMR 
Sbjct: 1   MAHSLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGQHHHRINRDKYHPGYFGKVGMRV 60

Query: 61  FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI 120
           FH  +N  YCP VNVD++W+L+P+E K K S +  P++D  + GYFKVLGKG+LP+ QP+
Sbjct: 61  FHLNKNHHYCPTVNVDRLWALVPEEQKTKVSAEKAPVIDCVKAGYFKVLGKGLLPK-QPL 120

Query: 121 VVKAKLVSKIAEKKIKEAGGAVVLTA 147
           +VKAK  S  AE KIK AGGA +L A
Sbjct: 121 IVKAKFFSHEAENKIKAAGGACILVA 145

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BLAST of CmoCh04G018520 vs. Swiss-Prot
Match: RL27A_MOUSE (60S ribosomal protein L27a OS=Mus musculus GN=Rpl27a PE=1 SV=5)

HSP 1 Score: 195.7 bits (496), Expect = 3.6e-49
Identity = 95/149 (63.76%), Postives = 119/149 (79.87%), Query Frame = 1


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           M +R +K RK RGHVS GHGRIGKHRKHPGGRGNAGGMHHHRI FDKYHPGYFGKVGMR+
Sbjct: 1   MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRH 60

Query: 61  FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDN---VPLVDVTQFGYFKVLGKGVLPEN 120
           +H  RN+ +CP VN+DK+W+L+ ++ +  A+K+     P++DV + GY+KVLGKG LP+ 
Sbjct: 61  YHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGVAPIIDVVRSGYYKVLGKGKLPK- 120

Query: 121 QPIVVKAKLVSKIAEKKIKEAGGAVVLTA 147
           QP++VKAK  S+ AE+KIK  GGA VL A
Sbjct: 121 QPVIVKAKFFSRRAEEKIKGVGGACVLVA 148

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BLAST of CmoCh04G018520 vs. TrEMBL
Match: A0A0A0KQ56_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G598710 PE=3 SV=1)

HSP 1 Score: 296.2 bits (757), Expect = 2.2e-77
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 1


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI 120
           FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI
Sbjct: 61  FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI 120

Query: 121 VVKAKLVSKIAEKKIKEAGGAVVLTA 147
           VVKAKLVSKIAEKKIKEAGGAVVLTA
Sbjct: 121 VVKAKLVSKIAEKKIKEAGGAVVLTA 146

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BLAST of CmoCh04G018520 vs. TrEMBL
Match: W9RTX6_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_000089 PE=3 SV=1)

HSP 1 Score: 292.0 bits (746), Expect = 4.1e-76
Identity = 139/146 (95.21%), Postives = 146/146 (100.00%), Query Frame = 1


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI 120
           FHKLRNKFYCPIVN+DK+WS++PQ+VKDKASKDNVPL+DVTQFGYFKVLGKGVLPENQP+
Sbjct: 61  FHKLRNKFYCPIVNIDKLWSMVPQDVKDKASKDNVPLIDVTQFGYFKVLGKGVLPENQPV 120

Query: 121 VVKAKLVSKIAEKKIKEAGGAVVLTA 147
           VVKAKLVSKIAEKKIKEAGGAVVLTA
Sbjct: 121 VVKAKLVSKIAEKKIKEAGGAVVLTA 146

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BLAST of CmoCh04G018520 vs. TrEMBL
Match: A0A067KGS0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11415 PE=3 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 7.0e-76
Identity = 142/146 (97.26%), Postives = 144/146 (98.63%), Query Frame = 1


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI 120
           FHKLRNKFYCPIVN+DK+WSLIPQEVKDKASKDN PLVDVTQFGYFKVLGKGVLPENQPI
Sbjct: 61  FHKLRNKFYCPIVNIDKLWSLIPQEVKDKASKDNAPLVDVTQFGYFKVLGKGVLPENQPI 120

Query: 121 VVKAKLVSKIAEKKIKEAGGAVVLTA 147
           VVKAKLVSKIAEKKIKE GGAVVLTA
Sbjct: 121 VVKAKLVSKIAEKKIKENGGAVVLTA 146

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BLAST of CmoCh04G018520 vs. TrEMBL
Match: A0A067K4E2_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17812 PE=3 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 1.2e-75
Identity = 140/146 (95.89%), Postives = 144/146 (98.63%), Query Frame = 1


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI 120
           FHKLRNKFYCPIVN+DK+WSLIPQE KDKASKDNVPL+DVTQFGYFKVLGKGVLPENQPI
Sbjct: 61  FHKLRNKFYCPIVNIDKLWSLIPQEAKDKASKDNVPLLDVTQFGYFKVLGKGVLPENQPI 120

Query: 121 VVKAKLVSKIAEKKIKEAGGAVVLTA 147
            VKAKLVSKIAEKKIKEAGGAV+LTA
Sbjct: 121 AVKAKLVSKIAEKKIKEAGGAVILTA 146

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BLAST of CmoCh04G018520 vs. TrEMBL
Match: A0A0A0LQZ7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G046840 PE=3 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 1.6e-75
Identity = 139/146 (95.21%), Postives = 145/146 (99.32%), Query Frame = 1


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI 120
           FHKLRNKFYCPIVNVDK+WSL+PQEVKDKASKDNVPL+DVTQFGYFKVLGKGVLPEN+P+
Sbjct: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFGYFKVLGKGVLPENKPV 120

Query: 121 VVKAKLVSKIAEKKIKEAGGAVVLTA 147
           VVKAKL+SKIAEKKIKE GGAVVLTA
Sbjct: 121 VVKAKLISKIAEKKIKENGGAVVLTA 146

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BLAST of CmoCh04G018520 vs. TAIR10
Match: AT1G70600.1 (AT1G70600.1 Ribosomal protein L18e/L15 superfamily protein)

HSP 1 Score: 271.9 bits (694), Expect = 2.2e-73
Identity = 129/146 (88.36%), Postives = 141/146 (96.58%), Query Frame = 1


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI 120
           FHKLRNKF+CPIVN+DK+WSL+P++VK K++KDNVPL+DVTQ G+FKVLGKG LPEN+P 
Sbjct: 61  FHKLRNKFFCPIVNLDKLWSLVPEDVKAKSTKDNVPLIDVTQHGFFKVLGKGHLPENKPF 120

Query: 121 VVKAKLVSKIAEKKIKEAGGAVVLTA 147
           VVKAKL+SK AEKKIKEAGGAVVLTA
Sbjct: 121 VVKAKLISKTAEKKIKEAGGAVVLTA 146

[Close]

BLAST of CmoCh04G018520 vs. TAIR10
Match: AT1G23290.1 (AT1G23290.1 Ribosomal protein L18e/L15 superfamily protein)

HSP 1 Score: 266.5 bits (680), Expect = 9.4e-72
Identity = 127/146 (86.99%), Postives = 138/146 (94.52%), Query Frame = 1


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           M T  KKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MATALKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI 120
           FHKLRNKF+CPIVN+DK+WSL+P++VK K+SKDNVPL+DVTQ G+FKVLGKG LPEN+P 
Sbjct: 61  FHKLRNKFFCPIVNLDKLWSLVPEDVKAKSSKDNVPLIDVTQHGFFKVLGKGHLPENKPF 120

Query: 121 VVKAKLVSKIAEKKIKEAGGAVVLTA 147
           VVKAKL+SK AEKKIKEAGGAVVLTA
Sbjct: 121 VVKAKLISKTAEKKIKEAGGAVVLTA 146

[Close]

BLAST of CmoCh04G018520 vs. TAIR10
Match: AT1G12960.1 (AT1G12960.1 Ribosomal protein L18e/L15 superfamily protein)

HSP 1 Score: 129.4 bits (324), Expect = 1.8e-30
Identity = 79/145 (54.48%), Postives = 84/145 (57.93%), Query Frame = 1


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTT  KK R  R HVS GHGR GKHRK PG RGNAG                   VGMRY
Sbjct: 1   MTTSRKKTRNLREHVSVGHGRFGKHRKLPGSRGNAG-------------------VGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI 120
           FHKLRNKFYC IVN+DK+WS+                          VLGKG LPEN+P+
Sbjct: 61  FHKLRNKFYCQIVNLDKLWSM--------------------------VLGKGFLPENKPV 100

Query: 121 VVKAKLVSKIAEKKIKEAGGAVVLT 146
           VVKAKLVS   EKKIKEAG AVVLT
Sbjct: 121 VVKAKLVSNTDEKKIKEAGSAVVLT 100

[Close]

BLAST of CmoCh04G018520 vs. NCBI nr
Match: gi|449434971|ref|XP_004135269.1| (PREDICTED: 60S ribosomal protein L27a-3 [Cucumis sativus])

HSP 1 Score: 296.2 bits (757), Expect = 3.1e-77
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 1


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI 120
           FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI
Sbjct: 61  FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI 120

Query: 121 VVKAKLVSKIAEKKIKEAGGAVVLTA 147
           VVKAKLVSKIAEKKIKEAGGAVVLTA
Sbjct: 121 VVKAKLVSKIAEKKIKEAGGAVVLTA 146

[Close]

BLAST of CmoCh04G018520 vs. NCBI nr
Match: gi|703122062|ref|XP_010102488.1| (hypothetical protein L484_014543 [Morus notabilis])

HSP 1 Score: 292.0 bits (746), Expect = 5.9e-76
Identity = 139/146 (95.21%), Postives = 146/146 (100.00%), Query Frame = 1


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI 120
           FHKLRNKFYCPIVN+DK+WS++PQ+VKDKASKDNVPL+DVTQFGYFKVLGKGVLPENQP+
Sbjct: 61  FHKLRNKFYCPIVNIDKLWSMVPQDVKDKASKDNVPLIDVTQFGYFKVLGKGVLPENQPV 120

Query: 121 VVKAKLVSKIAEKKIKEAGGAVVLTA 147
           VVKAKLVSKIAEKKIKEAGGAVVLTA
Sbjct: 121 VVKAKLVSKIAEKKIKEAGGAVVLTA 146

[Close]

BLAST of CmoCh04G018520 vs. NCBI nr
Match: gi|659067312|ref|XP_008438796.1| (PREDICTED: 60S ribosomal protein L27a-3-like [Cucumis melo])

HSP 1 Score: 291.6 bits (745), Expect = 7.7e-76
Identity = 140/146 (95.89%), Postives = 145/146 (99.32%), Query Frame = 1


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI 120
           FHKLRNKFYCPIVNVDK+WSL+PQEVKDKASKDNVPL+DVTQFGYFKVLGKGVLPENQP+
Sbjct: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFGYFKVLGKGVLPENQPV 120

Query: 121 VVKAKLVSKIAEKKIKEAGGAVVLTA 147
           VVKAKL+SKIAEKKIKE GGAVVLTA
Sbjct: 121 VVKAKLISKIAEKKIKENGGAVVLTA 146

[Close]

BLAST of CmoCh04G018520 vs. NCBI nr
Match: gi|802650546|ref|XP_012079990.1| (PREDICTED: 60S ribosomal protein L27a-3-like [Jatropha curcas])

HSP 1 Score: 291.2 bits (744), Expect = 1.0e-75
Identity = 142/146 (97.26%), Postives = 144/146 (98.63%), Query Frame = 1


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI 120
           FHKLRNKFYCPIVN+DK+WSLIPQEVKDKASKDN PLVDVTQFGYFKVLGKGVLPENQPI
Sbjct: 61  FHKLRNKFYCPIVNIDKLWSLIPQEVKDKASKDNAPLVDVTQFGYFKVLGKGVLPENQPI 120

Query: 121 VVKAKLVSKIAEKKIKEAGGAVVLTA 147
           VVKAKLVSKIAEKKIKE GGAVVLTA
Sbjct: 121 VVKAKLVSKIAEKKIKENGGAVVLTA 146

[Close]

BLAST of CmoCh04G018520 vs. NCBI nr
Match: gi|802722472|ref|XP_012085480.1| (PREDICTED: 60S ribosomal protein L27a-3 [Jatropha curcas])

HSP 1 Score: 290.4 bits (742), Expect = 1.7e-75
Identity = 140/146 (95.89%), Postives = 144/146 (98.63%), Query Frame = 1


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI 120
           FHKLRNKFYCPIVN+DK+WSLIPQE KDKASKDNVPL+DVTQFGYFKVLGKGVLPENQPI
Sbjct: 61  FHKLRNKFYCPIVNIDKLWSLIPQEAKDKASKDNVPLLDVTQFGYFKVLGKGVLPENQPI 120

Query: 121 VVKAKLVSKIAEKKIKEAGGAVVLTA 147
            VKAKLVSKIAEKKIKEAGGAV+LTA
Sbjct: 121 AVKAKLVSKIAEKKIKEAGGAVILTA 146

The following BLAST results are available for this feature:

BLAST of CmoCh04G018520 vs. Swiss-Prot


Match Name	E-value	Identity	Description
R27A3_ARATH	4.0e-72	88.36	60S ribosomal protein L27a-3 OS=Arabidopsis thaliana GN=RPL27AC PE=2 SV=2	[more]
R27A2_ARATH	1.7e-70	86.99	60S ribosomal protein L27a-2 OS=Arabidopsis thaliana GN=RPL27AB PE=2 SV=1	[more]
RL27A_DICDI	5.6e-50	64.43	60S ribosomal protein L27a OS=Dictyostelium discoideum GN=rpl27a PE=3 SV=1	[more]
RL27A_OSCTI	1.6e-49	65.75	60S ribosomal protein L27a OS=Oscheius tipulae GN=rpl-27a PE=3 SV=1	[more]
RL27A_MOUSE	3.6e-49	63.76	60S ribosomal protein L27a OS=Mus musculus GN=Rpl27a PE=1 SV=5	[more]

BLAST of CmoCh04G018520 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KQ56_CUCSA	2.2e-77	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G598710 PE=3 SV=1	[more]
W9RTX6_9ROSA	4.1e-76	95.21	Uncharacterized protein OS=Morus notabilis GN=L484_000089 PE=3 SV=1	[more]
A0A067KGS0_JATCU	7.0e-76	97.26	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11415 PE=3 SV=1	[more]
A0A067K4E2_JATCU	1.2e-75	95.89	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17812 PE=3 SV=1	[more]
A0A0A0LQZ7_CUCSA	1.6e-75	95.21	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G046840 PE=3 SV=1	[more]

BLAST of CmoCh04G018520 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G70600.1	2.2e-73	88.36	Ribosomal protein L18e/L15 superfamily protein	[more]
AT1G23290.1	9.4e-72	86.99	Ribosomal protein L18e/L15 superfamily protein	[more]
AT1G12960.1	1.8e-30	54.48	Ribosomal protein L18e/L15 superfamily protein	[more]

BLAST of CmoCh04G018520 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449434971\|ref\|XP_004135269.1\|	3.1e-77	100.00	PREDICTED: 60S ribosomal protein L27a-3 [Cucumis sativus]	[more]
gi\|703122062\|ref\|XP_010102488.1\|	5.9e-76	95.21	hypothetical protein L484_014543 [Morus notabilis]	[more]
gi\|659067312\|ref\|XP_008438796.1\|	7.7e-76	95.89	PREDICTED: 60S ribosomal protein L27a-3-like [Cucumis melo]	[more]
gi\|802650546\|ref\|XP_012079990.1\|	1.0e-75	97.26	PREDICTED: 60S ribosomal protein L27a-3-like [Jatropha curcas]	[more]
gi\|802722472\|ref\|XP_012085480.1\|	1.7e-75	95.89	PREDICTED: 60S ribosomal protein L27a-3 [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001196	Ribosomal_L15_CS
IPR021131	Ribosomal_L18e/L15P

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Cellular Component**
Term	Definition
GO:0015934	large ribosomal subunit
GO:0005622	intracellular
GO:0005840	ribosome

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0015934	large ribosomal subunit
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G018520.1	CmoCh04G018520.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001196	Ribosomal protein L15, conserved site	PROSITE	PS00475	RIBOSOMAL_L15	coord: 107..139 scor
IPR021131	Ribosomal protein L18e/L15P	PFAM	PF00828	Ribosomal_L27A	coord: 28..143 score: 3.2
IPR021131	Ribosomal protein L18e/L15P	unknown	SSF52080	Ribosomal proteins L15p and L18e	coord: 6..145 score: 3.14
None	No IPR available	GENE3D	G3DSA:3.100.10.10		coord: 26..144 score: 4.4
None	No IPR available	PANTHER	PTHR11721	60S RIBOSOMAL PROTEIN L27A	coord: 1..146 score: 1.4E
None	No IPR available	PANTHER	PTHR11721:SF6	SUBFAMILY NOT NAMED	coord: 1..146 score: 1.4E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G018520	Cucsa.286430	Cucumber (Gy14) v1	cgycmoB0794
CmoCh04G018520	CmaCh18G007730	Cucurbita maxima (Rimu)	cmacmoB422
CmoCh04G018520	Cla010049	Watermelon (97103) v1	cmowmB694
CmoCh04G018520	Csa5G598710	Cucumber (Chinese Long) v2	cmocuB739
CmoCh04G018520	MELO3C011956	Melon (DHL92) v3.5.1	cmomeB632
CmoCh04G018520	ClCG05G025700	Watermelon (Charleston Gray)	cmowcgB655
CmoCh04G018520	CSPI05G22320	Wild cucumber (PI 183967)	cmocpiB748
CmoCh04G018520	Lsi04G005850	Bottle gourd (USVL1VR-Ls)	cmolsiB661
CmoCh04G018520	Cp4.1LG09g05190	Cucurbita pepo (Zucchini)	cmocpeB646
CmoCh04G018520	Cp4.1LG01g15560	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G018520	MELO3C011956.2	Melon (DHL92) v3.6.1	cmomedB721
CmoCh04G018520	CsaV3_5G031180	Cucumber (Chinese Long) v3	cmocucB0875
CmoCh04G018520	Cla97C05G107920	Watermelon (97103) v2	cmowmbB730
CmoCh04G018520	Bhi07G001428	Wax gourd	cmowgoB0890
CmoCh04G018520	CsGy5G021790	Cucumber (Gy14) v2	cgybcmoB653
CmoCh04G018520	Carg14492	Silver-seed gourd	carcmoB0985
CmoCh04G018520	Carg14315	Silver-seed gourd	carcmoB0343

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh04G018520	CmoCh18G007780	Cucurbita moschata (Rifu)	cmocmoB341

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G018520	Cucurbita pepo (Zucchini)	cmocpeB656
CmoCh04G018520	Bottle gourd (USVL1VR-Ls)	cmolsiB698
CmoCh04G018520	Cucumber (Gy14) v2	cgybcmoB232
CmoCh04G018520	Melon (DHL92) v3.6.1	cmomedB761
CmoCh04G018520	Silver-seed gourd	carcmoB0685
CmoCh04G018520	Silver-seed gourd	carcmoB0858
CmoCh04G018520	Cucumber (Chinese Long) v3	cmocucB0808
CmoCh04G018520	Watermelon (97103) v2	cmowmbB763
CmoCh04G018520	Wax gourd	cmowgoB0861
CmoCh04G018520	Cucurbita moschata (Rifu)	cmocmoB472
CmoCh04G018520	Cucumber (Gy14) v1	cgycmoB1092
CmoCh04G018520	Cucurbita maxima (Rimu)	cmacmoB189
CmoCh04G018520	Cucurbita maxima (Rimu)	cmacmoB728
CmoCh04G018520	Cucurbita maxima (Rimu)	cmacmoB785
CmoCh04G018520	Wild cucumber (PI 183967)	cmocpiB693
CmoCh04G018520	Cucumber (Chinese Long) v2	cmocuB682
CmoCh04G018520	Melon (DHL92) v3.5.1	cmomeB673
CmoCh04G018520	Watermelon (Charleston Gray)	cmowcgB683
CmoCh04G018520	Watermelon (97103) v1	cmowmB666