Cucsa.280370 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.280370
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	B3 domain-containing protein
Location	scaffold02633 : 325774 .. 326007 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGATAAATGTAATGATATTGGATGATGTTCTTGAAGAAAGAATGCTGtGTTTGAAGAAGTGGAAAATTGGGAGTGGATATGTTTACTGTTTGATGACAAAATGGAATTTGATGGTTGAAGAAAGGGGATTCAAAGGTGGAGAGGAGATTCAAGTTTGGAGCTTCAGAAAAGATGATGAATATGAAGCTCATCGTCTTTGCTTTGCATTGGTTAAATTAGCAACTTGCTGA

mRNA sequence

ATGGGGATAAATGTAATGATATTGGATGATGTTCTTGAAGAAAGAATGCTGTGTTTGAAGAAGTGGAAAATTGGGAGTGGATATGTTTACTGTTTGATGACAAAATGGAATTTGATGGTTGAAGAAAGGGGATTCAAAGGTGGAGAGGAGATTCAAGTTTGGAGCTTCAGAAAAGATGATGAATATGAAGCTCATCGTCTTTGCTTTGCATTGGTTAAATTAGCAACTTGCTGA

Coding sequence (CDS)

ATGGGGATAAATGTAATGATATTGGATGATGTTCTTGAAGAAAGAATGCTGtGTTTGAAGAAGTGGAAAATTGGGAGTGGATATGTTTACTGTTTGATGACAAAATGGAATTTGATGGTTGAAGAAAGGGGATTCAAAGGTGGAGAGGAGATTCAAGTTTGGAGCTTCAGAAAAGATGATGAATATGAAGCTCATCGTCTTTGCTTTGCATTGGTTAAATTAGCAACTTGCTGA

Protein sequence

MGINVMILDDVLEERMLCLKKWKIGSGYVYCLMTKWNLMVEERGFKGGEEIQVWSFRKDDEYEAHRLCFALVKLATC*

Homology

[Close]

BLAST of Cucsa.280370 vs. TrEMBL
Match: A0A0A0KP87_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G544060 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 3.2e-35
Identity = 73/77 (94.81%), Postives = 73/77 (94.81%), Query Frame = 1


Query: 1   MGINVMILDDVLEERMLCLKKWKIGSGYVYCLMTKWNLMVEERGFKGGEEIQVWSFRKDD 60
           MGINVMILDDVLEERMLCLKKWKIGSGYVYCLMTKWNLMVEERG K GEEIQVWSFRKDD
Sbjct: 189 MGINVMILDDVLEERMLCLKKWKIGSGYVYCLMTKWNLMVEERGLKSGEEIQVWSFRKDD 248

Query: 61  EYEAHRLCFALVKLATC 78
           E EAHRLC ALVKLATC
Sbjct: 249 EDEAHRLCLALVKLATC 265

[Close]

BLAST of Cucsa.280370 vs. TrEMBL
Match: A0A0A0KPD7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G550750 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 6.1e-34
Identity = 71/77 (92.21%), Postives = 72/77 (93.51%), Query Frame = 1


Query: 1   MGINVMILDDVLEERMLCLKKWKIGSGYVYCLMTKWNLMVEERGFKGGEEIQVWSFRKDD 60
           MGINVM+LDDVLEERMLCLKKWKIGSG VYCLMTKWNLMVEERG K GEEIQVWSFRKDD
Sbjct: 59  MGINVMLLDDVLEERMLCLKKWKIGSGEVYCLMTKWNLMVEERGLKSGEEIQVWSFRKDD 118

Query: 61  EYEAHRLCFALVKLATC 78
           E EAHRLC ALVKLATC
Sbjct: 119 EDEAHRLCLALVKLATC 135

[Close]

BLAST of Cucsa.280370 vs. TrEMBL
Match: A0A0A0KUX9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G570410 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 4.3e-32
Identity = 68/73 (93.15%), Postives = 68/73 (93.15%), Query Frame = 1


Query: 1   MGINVMILDDVLEERMLCLKKWKIGSGYVYCLMTKWNLMVEERGFKGGEEIQVWSFRKDD 60
           MGINVM LDDVLEERMLCLKKWKIGSGYVYCLMTKWNLMVEERG K GEEIQVWSFRKDD
Sbjct: 173 MGINVMTLDDVLEERMLCLKKWKIGSGYVYCLMTKWNLMVEERGLKSGEEIQVWSFRKDD 232

Query: 61  EYEAHRLCFALVK 74
           E EAHRLCFAL K
Sbjct: 233 EDEAHRLCFALEK 245

[Close]

BLAST of Cucsa.280370 vs. TrEMBL
Match: A0A0A0KPF2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G563790 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 2.8e-31
Identity = 66/76 (86.84%), Postives = 69/76 (90.79%), Query Frame = 1


Query: 2   GINVMILDDVLEERMLCLKKWKIGSGYVYCLMTKWNLMVEERGFKGGEEIQVWSFRKDDE 61
           GINVM+LDDVLEERM+CLKKWKIGSG VYCLMT WN MVE+RG K GEEIQVWSFRKDDE
Sbjct: 29  GINVMVLDDVLEERMVCLKKWKIGSGEVYCLMTHWNSMVEKRGLKSGEEIQVWSFRKDDE 88

Query: 62  YEAHRLCFALVKLATC 78
            EAHRLC ALVKLATC
Sbjct: 89  DEAHRLCLALVKLATC 104

[Close]

BLAST of Cucsa.280370 vs. TrEMBL
Match: A0A0A0KSY8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G570420 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 4.8e-31
Identity = 65/72 (90.28%), Postives = 68/72 (94.44%), Query Frame = 1


Query: 2   GINVMILDDVLEERMLCLKKWKIGSGYVYCLMTKWNLMVEERGFKGGEEIQVWSFRKDDE 61
           GINVMILDD LEER+LCLKKWKIGSG VYCLMT+WNLMVE+RGFK GEEIQVWSFRKDDE
Sbjct: 193 GINVMILDDALEERILCLKKWKIGSGEVYCLMTQWNLMVEKRGFKSGEEIQVWSFRKDDE 252

Query: 62  YEAHRLCFALVK 74
           YEAHRLCFAL K
Sbjct: 253 YEAHRLCFALEK 264

[Close]

BLAST of Cucsa.280370 vs. TAIR10
Match: AT2G31420.1 (AT2G31420.1 Domain of unknown function (DUF313) )

HSP 1 Score: 50.4 bits (119), Expect = 5.6e-07
Identity = 24/76 (31.58%), Postives = 43/76 (56.58%), Query Frame = 1


Query: 2   GINVMILDDVLEERMLCLKKWKIGSGYVYCLMTKWNLMVEERGFKGGEEIQVWSFRKDDE 61
           G+ V ++D   ++ ++ LKKW   + + Y L   WN +++++ FK  + I++WSFR    
Sbjct: 129 GLKVFLVDPESDKHVVYLKKWNGNTVWKYVLSHGWNNVIDKKIFKVNDVIEIWSFRDG-- 188

Query: 62  YEAHRLCFALVKLATC 78
             + +LCFAL     C
Sbjct: 189 --SGKLCFALSSPTRC 200

[Close]

BLAST of Cucsa.280370 vs. NCBI nr
Match: gi|659072862|ref|XP_008467133.1| (PREDICTED: B3 domain-containing protein At2g31420-like [Cucumis melo])

HSP 1 Score: 158.3 bits (399), Expect = 5.4e-36
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 1


Query: 2   GINVMILDDVLEERMLCLKKWKIGSGYVYCLMTKWNLMVEERGFKGGEEIQVWSFRKDDE 61
           GINVM+LDDVLEERMLCLKKWKIGSG VYCLMT+WNLMVEERGFKGGEEIQVWSFRKDDE
Sbjct: 112 GINVMMLDDVLEERMLCLKKWKIGSGEVYCLMTRWNLMVEERGFKGGEEIQVWSFRKDDE 171

Query: 62  YEAHRLCFALVKLATC 78
           YEAHRLCFALVKLATC
Sbjct: 172 YEAHRLCFALVKLATC 187

[Close]

BLAST of Cucsa.280370 vs. NCBI nr
Match: gi|778703844|ref|XP_011655441.1| (PREDICTED: B3 domain-containing protein At2g31420-like [Cucumis sativus])

HSP 1 Score: 155.2 bits (391), Expect = 4.6e-35
Identity = 73/77 (94.81%), Postives = 73/77 (94.81%), Query Frame = 1


Query: 1   MGINVMILDDVLEERMLCLKKWKIGSGYVYCLMTKWNLMVEERGFKGGEEIQVWSFRKDD 60
           MGINVMILDDVLEERMLCLKKWKIGSGYVYCLMTKWNLMVEERG K GEEIQVWSFRKDD
Sbjct: 189 MGINVMILDDVLEERMLCLKKWKIGSGYVYCLMTKWNLMVEERGLKSGEEIQVWSFRKDD 248

Query: 61  EYEAHRLCFALVKLATC 78
           E EAHRLC ALVKLATC
Sbjct: 249 EDEAHRLCLALVKLATC 265

[Close]

BLAST of Cucsa.280370 vs. NCBI nr
Match: gi|778708608|ref|XP_011656245.1| (PREDICTED: B3 domain-containing protein At2g31420-like [Cucumis sativus])

HSP 1 Score: 151.0 bits (380), Expect = 8.7e-34
Identity = 71/77 (92.21%), Postives = 72/77 (93.51%), Query Frame = 1


Query: 1   MGINVMILDDVLEERMLCLKKWKIGSGYVYCLMTKWNLMVEERGFKGGEEIQVWSFRKDD 60
           MGINVM+LDDVLEERMLCLKKWKIGSG VYCLMTKWNLMVEERG K GEEIQVWSFRKDD
Sbjct: 59  MGINVMLLDDVLEERMLCLKKWKIGSGEVYCLMTKWNLMVEERGLKSGEEIQVWSFRKDD 118

Query: 61  EYEAHRLCFALVKLATC 78
           E EAHRLC ALVKLATC
Sbjct: 119 EDEAHRLCLALVKLATC 135

[Close]

BLAST of Cucsa.280370 vs. NCBI nr
Match: gi|700196319|gb|KGN51496.1| (hypothetical protein Csa_5G570410 [Cucumis sativus])

HSP 1 Score: 144.8 bits (364), Expect = 6.2e-32
Identity = 68/73 (93.15%), Postives = 68/73 (93.15%), Query Frame = 1


Query: 1   MGINVMILDDVLEERMLCLKKWKIGSGYVYCLMTKWNLMVEERGFKGGEEIQVWSFRKDD 60
           MGINVM LDDVLEERMLCLKKWKIGSGYVYCLMTKWNLMVEERG K GEEIQVWSFRKDD
Sbjct: 173 MGINVMTLDDVLEERMLCLKKWKIGSGYVYCLMTKWNLMVEERGLKSGEEIQVWSFRKDD 232

Query: 61  EYEAHRLCFALVK 74
           E EAHRLCFAL K
Sbjct: 233 EDEAHRLCFALEK 245

[Close]

BLAST of Cucsa.280370 vs. NCBI nr
Match: gi|659133729|ref|XP_008466876.1| (PREDICTED: B3 domain-containing protein At2g31420-like [Cucumis melo])

HSP 1 Score: 144.1 bits (362), Expect = 1.1e-31
Identity = 67/71 (94.37%), Postives = 69/71 (97.18%), Query Frame = 1


Query: 6  MILDDVLEERMLCLKKWKIGSGYVYCLMTKWNLMVEERGFKGGEEIQVWSFRKDDEYEAH 65
          MILDDVLEERMLCLKKWKIGSG VYCLMTKWNLMVE+RGF+ GEEIQVWSFRKDDEYEAH
Sbjct: 1  MILDDVLEERMLCLKKWKIGSGEVYCLMTKWNLMVEKRGFESGEEIQVWSFRKDDEYEAH 60

Query: 66 RLCFALVKLAT 77
          RLCFALVKLAT
Sbjct: 61 RLCFALVKLAT 71

The following BLAST results are available for this feature:

BLAST of Cucsa.280370 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KP87_CUCSA	3.2e-35	94.81	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G544060 PE=4 SV=1	[more]
A0A0A0KPD7_CUCSA	6.1e-34	92.21	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G550750 PE=4 SV=1	[more]
A0A0A0KUX9_CUCSA	4.3e-32	93.15	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G570410 PE=4 SV=1	[more]
A0A0A0KPF2_CUCSA	2.8e-31	86.84	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G563790 PE=4 SV=1	[more]
A0A0A0KSY8_CUCSA	4.8e-31	90.28	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G570420 PE=4 SV=1	[more]

BLAST of Cucsa.280370 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G31420.1	5.6e-07	31.58	Domain of unknown function (DUF313)	[more]

BLAST of Cucsa.280370 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659072862\|ref\|XP_008467133.1\|	5.4e-36	96.05	PREDICTED: B3 domain-containing protein At2g31420-like [Cucumis melo]	[more]
gi\|778703844\|ref\|XP_011655441.1\|	4.6e-35	94.81	PREDICTED: B3 domain-containing protein At2g31420-like [Cucumis sativus]	[more]
gi\|778708608\|ref\|XP_011656245.1\|	8.7e-34	92.21	PREDICTED: B3 domain-containing protein At2g31420-like [Cucumis sativus]	[more]
gi\|700196319\|gb\|KGN51496.1\|	6.2e-32	93.15	hypothetical protein Csa_5G570410 [Cucumis sativus]	[more]
gi\|659133729\|ref\|XP_008466876.1\|	1.1e-31	94.37	PREDICTED: B3 domain-containing protein At2g31420-like [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.280370.1	Cucsa.280370.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31541	FAMILY NOT NAMED	coord: 1..74 score: 8.3
None	No IPR available	PANTHER	PTHR31541:SF22	SUBFAMILY NOT NAMED	coord: 1..74 score: 8.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.280370	Cla003924	Watermelon (97103) v1	cgywmB512
Cucsa.280370	Csa5G570410	Cucumber (Chinese Long) v2	cgycuB398
Cucsa.280370	MELO3C005306	Melon (DHL92) v3.5.1	cgymeB467
Cucsa.280370	ClCG01G006230	Watermelon (Charleston Gray)	cgywcgB484
Cucsa.280370	CSPI05G19580	Wild cucumber (PI 183967)	cgycpiB421
Cucsa.280370	CmaCh04G021310	Cucurbita maxima (Rimu)	cgycmaB0780
Cucsa.280370	CmoCh04G022270	Cucurbita moschata (Rifu)	cgycmoB0775
Cucsa.280370	Lsi09G006580	Bottle gourd (USVL1VR-Ls)	cgylsiB452
Cucsa.280370	Cp4.1LG01g18450	Cucurbita pepo (Zucchini)	cgycpeB0737
Cucsa.280370	MELO3C005306.2	Melon (DHL92) v3.6.1	cgymedB463
Cucsa.280370	CsaV3_5G028430	Cucumber (Chinese Long) v3	cgycucB428
Cucsa.280370	Cla97C01G006540	Watermelon (97103) v2	cgywmbB485
Cucsa.280370	Bhi12G000783	Wax gourd	cgywgoB564

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.280370	Silver-seed gourd	carcgyB0230
Cucsa.280370	Silver-seed gourd	carcgyB0495
Cucsa.280370	Cucurbita maxima (Rimu)	cgycmaB0775
Cucsa.280370	Cucurbita moschata (Rifu)	cgycmoB0771
Cucsa.280370	Cucurbita moschata (Rifu)	cgycmoB0777
Cucsa.280370	Cucurbita pepo (Zucchini)	cgycpeB0735