Cucsa.248980 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.248980
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Ribosomal protein S21 family protein
Location	scaffold02208 : 153609 .. 155002 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACTCGTTGGCGCGGAACATTTCGTGCTCCATCAGATCTTCGATTCCCACCAATTGTCTACAGCACCAGCAATGGAGGGGGATCCGAGTGAAGGTGTTGAGAGGGGGTCTAGAGCGGGCACTGACAGTTCTGCAAAGGAAGATGCAATCGAGTGGAATCGAGCGACTGATTAAGCGTGAACAAGTTCATCATATCAAGAATTCCGAGAAACGGGTTTTGGCCAGAAAGACTTTAGAGCGCAAAATTCAATCCAAGGACCTCGCTCGCAAACTCAAAGCCATCCTTATAAAGAAAGTCAGGTATATATGTATATATATATATATATAACTCTTTTCTTTCAACAGTAAGCTTTTGAATAGTGATGCAAGCGTTCGAATGGATTCTGCATAGTGGCCTGATCATACGGTTCTTCTAGCTTTGCTTATAACCTGCTTGCTAATTTTAGCGACTAGGGATTGCATAGTACCTGAAGTGTATACTTAGTGTTATCAAATGCAACAAGTTTCTGCCCGTTGAACTATTGGAAAATTAGACTTCCTGCCTAAAGCATCAACAACTCTATTTATTGCCAGCACGATATCTATAGTTCAGAGTAAAGTTTAAATGTTGAACGTTTCATGTATTCTACTGAGATTCTTTTAGGAATTGTTGAGTTGGTGATACTAGCAATCTGTAAAAATCACAAGCTTTCTGTTCTTATCAATTTAGTGATTAACCGAGCTTTCATTGAGAAGAAATTAAAGAATACATGATCATATTGAAAAGTGGGAAAACTATAAGACGGTTCTCTTCCAAGAGAAATAAAACTTGAGGACAAATAGTATAGCGATTTGTAATTGAAGCCTACCGGGATGCATAGAATCTAACGAAGAACAAGACTTCACTTAGGTAACTCTTGAGCCCTCAAAAAATTATATTTTTCTTCTCATCCCATGACCCCTTAAAATGGCATTGCCACAAAAAAACTTCCCTTCTTACGAGTTACAAAAGGGAGGATGTAGACAAAATTCCTCCATTATCTCCCTTGAGCCCTGTTGCCTGGCTAAAGCTAGTTTTTTTTTTTCTGTGACAAGAAACAGAAACATGTATTCTTAGAAGAACAAAACTAAAGCTAGATCAAACTCCTCTAACTGATTCCAGACTGCATATGCAAAATCACCTGTCTGGCTTAGATTTTCTTTTGATTAAAGACGATGGAACTAAGATTATGATTTCTTAAAAAATTATTTCCTCACATCGTTAGCTCAAAGCAGTTGTATCTTTCAAGCGCTACGGGGAGGTTGCTTCTCGTTCTTCTAATTAAGCCGCTCCTTGTTTTCTCAAGTCAAGAGGAAAAATTGTTTTGGACTGAACTTGAACAAAACTCACTCACATTTCTCTTGAGCCCTTAA

mRNA sequence

ATGAACTCGTTGGCGCGGAACATTTCGTGCTCCATCAGATCTTCGATTCCCACCAATTGTCTACAGCACCAGCAATGGAGGGGGATCCGAGTGAAGGTGTTGAGAGGGGGTCTAGAGCGGGCACTGACAGTTCTGCAAAGGAAGATGCAATCGAGTGGAATCGAGCGACTGATTAAGCGTGAACAAGTTCATCATATCAAGAATTCCGAGAAACGGGTTTTGGCCAGAAAGACTTTAGAGCGCAAAATTCAATCCAAGGACCTCGCTCGCAAACTCAAAGCCATCCTTATAAAGAAAGTCAGCTCAAAGCAGTTGTATCTTTCAAGCGCTACGGGGAGGTTGCTTCTCGTTCTTCTAATTAAGCCGCTCCTTGTTTTCTCAAGTCAAGAGGAAAAATTGTTTTGGACTGAACTTGAACAAAACTCACTCACATTTCTCTTGAGCCCTTAA

Coding sequence (CDS)

ATGAACTCGTTGGCGCGGAACATTTCGTGCTCCATCAGATCTTCGATTCCCACCAATTGTCTACAGCACCAGCAATGGAGGGGGATCCGAGTGAAGGTGTTGAGAGGGGGTCTAGAGCGGGCACTGACAGTTCTGCAAAGGAAGATGCAATCGAGTGGAATCGAGCGACTGATTAAGCGTGAACAAGTTCATCATATCAAGAATTCCGAGAAACGGGTTTTGGCCAGAAAGACTTTAGAGCGCAAAATTCAATCCAAGGACCTCGCTCGCAAACTCAAAGCCATCCTTATAAAGAAAGTCAGCTCAAAGCAGTTGTATCTTTCAAGCGCTACGGGGAGGTTGCTTCTCGTTCTTCTAATTAAGCCGCTCCTTGTTTTCTCAAGTCAAGAGGAAAAATTGTTTTGGACTGAACTTGAACAAAACTCACTCACATTTCTCTTGAGCCCTTAA

Protein sequence

MNSLARNISCSIRSSIPTNCLQHQQWRGIRVKVLRGGLERALTVLQRKMQSSGIERLIKREQVHHIKNSEKRVLARKTLERKIQSKDLARKLKAILIKKVSSKQLYLSSATGRLLLVLLIKPLLVFSSQEEKLFWTELEQNSLTFLLSP*

Homology

[Close]

BLAST of Cucsa.248980 vs. TrEMBL
Match: A0A0A0LCD1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G689780 PE=4 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 1.2e-46
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 1


Query: 1   MNSLARNISCSIRSSIPTNCLQHQQWRGIRVKVLRGGLERALTVLQRKMQSSGIERLIKR 60
           MNSLARNISCSIRSSIPTNCLQHQQWRGIRVKVLRGGLERALTVLQRKMQSSGIERLIKR
Sbjct: 1   MNSLARNISCSIRSSIPTNCLQHQQWRGIRVKVLRGGLERALTVLQRKMQSSGIERLIKR 60

Query: 61  EQVHHIKNSEKRVLARKTLERKIQSKDLARKLKAILIKKV 101
           EQVHHIKNSEKRVLARKTLERKIQSKDLARKLKAILIKKV
Sbjct: 61  EQVHHIKNSEKRVLARKTLERKIQSKDLARKLKAILIKKV 100

[Close]

BLAST of Cucsa.248980 vs. TrEMBL
Match: B9SVN0_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0794120 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 2.7e-30
Identity = 76/110 (69.09%), Postives = 87/110 (79.09%), Query Frame = 1


Query: 1   MNSLARNISCSI------RSSIPTNCLQHQQWRGIRVKVLRGGLERALTVLQRKMQSSGI 60
           MN++AR + C+I        S+     Q QQWRGIRVKV  G LERALTV+QRKMQSSGI
Sbjct: 1   MNTIARQV-CAIFKVTNFNDSLSQELYQIQQWRGIRVKVFDGNLERALTVMQRKMQSSGI 60

Query: 61  ERLIKREQVHHIKNSEKRVLARKTLERKIQSKDLARKLKAILIKKVSSKQ 105
           ERLIKREQ+HHIKNSEKRVLARK L+ KIQS++LARKLK+ILIKKVS  Q
Sbjct: 61  ERLIKREQIHHIKNSEKRVLARKRLQHKIQSQELARKLKSILIKKVSQNQ 109

[Close]

BLAST of Cucsa.248980 vs. TrEMBL
Match: D7TR92_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0185g00140 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 1.5e-28
Identity = 74/103 (71.84%), Postives = 84/103 (81.55%), Query Frame = 1


Query: 1   MNSLARNISCSIRS-SIPTNCL--QHQQWRGIRVKVLRGGLERALTVLQRKMQSSGIERL 60
           M+S+ R++S   R  S+  N L  + QQWRGIRVKV  G LE AL V+QRKMQSSGIERL
Sbjct: 1   MSSIVRHVSTIFRCPSLVPNSLSCELQQWRGIRVKVFNGNLESALVVMQRKMQSSGIERL 60

Query: 61  IKREQVHHIKNSEKRVLARKTLERKIQSKDLARKLKAILIKKV 101
           IKREQ HHIKNSEKRVLARK LER+I+S+DLARKLKAILIKKV
Sbjct: 61  IKREQTHHIKNSEKRVLARKNLERRIRSQDLARKLKAILIKKV 103

[Close]

BLAST of Cucsa.248980 vs. TrEMBL
Match: A0A059D823_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B03269 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 1.2e-27
Identity = 73/104 (70.19%), Postives = 81/104 (77.88%), Query Frame = 1


Query: 1   MNSLARNISCSIRSSIPTNC----LQHQQWRGIRVKVLRGGLERALTVLQRKMQSSGIER 60
           MN LAR  S  ++     +C    L HQQ RGIRVKVL G LE+AL  +QR MQSSGIER
Sbjct: 1   MNHLARRASSILQRPSWASCGGGGLNHQQSRGIRVKVLNGNLEQALGFMQRTMQSSGIER 60

Query: 61  LIKREQVHHIKNSEKRVLARKTLERKIQSKDLARKLKAILIKKV 101
           LIKREQ HH+KNSEKRVLARK LERKI+S+DLARKLKAILIKKV
Sbjct: 61  LIKREQTHHLKNSEKRVLARKLLERKIRSQDLARKLKAILIKKV 104

[Close]

BLAST of Cucsa.248980 vs. TrEMBL
Match: A0A061E7U8_THECC (Ribosomal protein S21 family protein isoform 1 OS=Theobroma cacao GN=TCM_010596 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 2.1e-27
Identity = 69/107 (64.49%), Postives = 85/107 (79.44%), Query Frame = 1


Query: 1   MNSLARNISCSIRS-------SIPTNCLQHQQWRGIRVKVLRGGLERALTVLQRKMQSSG 60
           MN++AR +S +I +       S+  +  Q QQWRGIRVKV  G LERAL ++QRKMQSSG
Sbjct: 1   MNAIARRVSATIFAPASQGVNSLGRDPSQIQQWRGIRVKVRNGNLERALVLMQRKMQSSG 60

Query: 61  IERLIKREQVHHIKNSEKRVLARKTLERKIQSKDLARKLKAILIKKV 101
           IERLIK+EQ HH+KNSEKR+LARK LERKI+S++LARKL+ ILIKKV
Sbjct: 61  IERLIKQEQTHHVKNSEKRILARKNLERKIRSQELARKLQTILIKKV 107

[Close]

BLAST of Cucsa.248980 vs. TAIR10
Match: AT3G26360.1 (AT3G26360.1 Ribosomal protein S21 family protein)

HSP 1 Score: 112.5 bits (280), Expect = 2.3e-25
Identity = 61/100 (61.00%), Postives = 78/100 (78.00%), Query Frame = 1


Query: 1   MNSLARNISCSIRSSIPTNCLQHQQWRGIRVKVLRGGLERALTVLQRKMQSSGIERLIKR 60
           MN++A+ ++  +    P+   Q QQ RGIRVKV    L++ALT+LQ+KMQSSG+ERLIK 
Sbjct: 1   MNTIAKRVTGLVTR--PSLNQQLQQERGIRVKVFSNDLDKALTILQKKMQSSGMERLIKG 60

Query: 61  EQVHHIKNSEKRVLARKTLERKIQSKDLARKLKAILIKKV 101
            Q HHIKNSEK+VLARK LER+I+S D ARKL++ILIKKV
Sbjct: 61  TQTHHIKNSEKKVLARKNLERRIKSIDFARKLQSILIKKV 98

[Close]

BLAST of Cucsa.248980 vs. NCBI nr
Match: gi|449464006|ref|XP_004149720.1| (PREDICTED: uncharacterized protein LOC101216913 [Cucumis sativus])

HSP 1 Score: 194.1 bits (492), Expect = 1.7e-46
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 1


Query: 1   MNSLARNISCSIRSSIPTNCLQHQQWRGIRVKVLRGGLERALTVLQRKMQSSGIERLIKR 60
           MNSLARNISCSIRSSIPTNCLQHQQWRGIRVKVLRGGLERALTVLQRKMQSSGIERLIKR
Sbjct: 1   MNSLARNISCSIRSSIPTNCLQHQQWRGIRVKVLRGGLERALTVLQRKMQSSGIERLIKR 60

Query: 61  EQVHHIKNSEKRVLARKTLERKIQSKDLARKLKAILIKKV 101
           EQVHHIKNSEKRVLARKTLERKIQSKDLARKLKAILIKKV
Sbjct: 61  EQVHHIKNSEKRVLARKTLERKIQSKDLARKLKAILIKKV 100

[Close]

BLAST of Cucsa.248980 vs. NCBI nr
Match: gi|659123737|ref|XP_008461813.1| (PREDICTED: uncharacterized protein LOC103500324 [Cucumis melo])

HSP 1 Score: 181.4 bits (459), Expect = 1.2e-42
Identity = 93/100 (93.00%), Postives = 98/100 (98.00%), Query Frame = 1


Query: 1   MNSLARNISCSIRSSIPTNCLQHQQWRGIRVKVLRGGLERALTVLQRKMQSSGIERLIKR 60
           MNSLARNISCSIRSSI TNCLQ+QQWRGIRVKVL+GGLERALTVLQRKMQSSGIERLIKR
Sbjct: 1   MNSLARNISCSIRSSIHTNCLQYQQWRGIRVKVLKGGLERALTVLQRKMQSSGIERLIKR 60

Query: 61  EQVHHIKNSEKRVLARKTLERKIQSKDLARKLKAILIKKV 101
           EQ+HHIKNSEKRVLARKTLERKI+S+DLARKLK ILIKKV
Sbjct: 61  EQIHHIKNSEKRVLARKTLERKIRSQDLARKLKDILIKKV 100

[Close]

BLAST of Cucsa.248980 vs. NCBI nr
Match: gi|223530465|gb|EEF32349.1| (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 139.8 bits (351), Expect = 3.9e-30
Identity = 76/110 (69.09%), Postives = 87/110 (79.09%), Query Frame = 1


Query: 1   MNSLARNISCSI------RSSIPTNCLQHQQWRGIRVKVLRGGLERALTVLQRKMQSSGI 60
           MN++AR + C+I        S+     Q QQWRGIRVKV  G LERALTV+QRKMQSSGI
Sbjct: 1   MNTIARQV-CAIFKVTNFNDSLSQELYQIQQWRGIRVKVFDGNLERALTVMQRKMQSSGI 60

Query: 61  ERLIKREQVHHIKNSEKRVLARKTLERKIQSKDLARKLKAILIKKVSSKQ 105
           ERLIKREQ+HHIKNSEKRVLARK L+ KIQS++LARKLK+ILIKKVS  Q
Sbjct: 61  ERLIKREQIHHIKNSEKRVLARKRLQHKIQSQELARKLKSILIKKVSQNQ 109

[Close]

BLAST of Cucsa.248980 vs. NCBI nr
Match: gi|1000945125|ref|XP_015581402.1| (PREDICTED: uncharacterized protein LOC8283469 [Ricinus communis])

HSP 1 Score: 136.3 bits (342), Expect = 4.3e-29
Identity = 74/106 (69.81%), Postives = 85/106 (80.19%), Query Frame = 1


Query: 1   MNSLARNISCSI------RSSIPTNCLQHQQWRGIRVKVLRGGLERALTVLQRKMQSSGI 60
           MN++AR + C+I        S+     Q QQWRGIRVKV  G LERALTV+QRKMQSSGI
Sbjct: 1   MNTIARQV-CAIFKVTNFNDSLSQELYQIQQWRGIRVKVFDGNLERALTVMQRKMQSSGI 60

Query: 61  ERLIKREQVHHIKNSEKRVLARKTLERKIQSKDLARKLKAILIKKV 101
           ERLIKREQ+HHIKNSEKRVLARK L+ KIQS++LARKLK+ILIKKV
Sbjct: 61  ERLIKREQIHHIKNSEKRVLARKRLQHKIQSQELARKLKSILIKKV 105

[Close]

BLAST of Cucsa.248980 vs. NCBI nr
Match: gi|731396728|ref|XP_010652624.1| (PREDICTED: uncharacterized protein LOC100855184 [Vitis vinifera])

HSP 1 Score: 134.0 bits (336), Expect = 2.1e-28
Identity = 74/103 (71.84%), Postives = 84/103 (81.55%), Query Frame = 1


Query: 1   MNSLARNISCSIRS-SIPTNCL--QHQQWRGIRVKVLRGGLERALTVLQRKMQSSGIERL 60
           M+S+ R++S   R  S+  N L  + QQWRGIRVKV  G LE AL V+QRKMQSSGIERL
Sbjct: 1   MSSIVRHVSTIFRCPSLVPNSLSCELQQWRGIRVKVFNGNLESALVVMQRKMQSSGIERL 60

Query: 61  IKREQVHHIKNSEKRVLARKTLERKIQSKDLARKLKAILIKKV 101
           IKREQ HHIKNSEKRVLARK LER+I+S+DLARKLKAILIKKV
Sbjct: 61  IKREQTHHIKNSEKRVLARKNLERRIRSQDLARKLKAILIKKV 103

The following BLAST results are available for this feature:

BLAST of Cucsa.248980 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LCD1_CUCSA	1.2e-46	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G689780 PE=4 SV=1	[more]
B9SVN0_RICCO	2.7e-30	69.09	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0794120 PE=4 SV=1	[more]
D7TR92_VITVI	1.5e-28	71.84	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0185g00140 PE=4 SV=...	[more]
A0A059D823_EUCGR	1.2e-27	70.19	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B03269 PE=4 SV=1	[more]
A0A061E7U8_THECC	2.1e-27	64.49	Ribosomal protein S21 family protein isoform 1 OS=Theobroma cacao GN=TCM_010596 ...	[more]

BLAST of Cucsa.248980 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G26360.1	2.3e-25	61.00	Ribosomal protein S21 family protein	[more]

BLAST of Cucsa.248980 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449464006\|ref\|XP_004149720.1\|	1.7e-46	100.00	PREDICTED: uncharacterized protein LOC101216913 [Cucumis sativus]	[more]
gi\|659123737\|ref\|XP_008461813.1\|	1.2e-42	93.00	PREDICTED: uncharacterized protein LOC103500324 [Cucumis melo]	[more]
gi\|223530465\|gb\|EEF32349.1\|	3.9e-30	69.09	conserved hypothetical protein [Ricinus communis]	[more]
gi\|1000945125\|ref\|XP_015581402.1\|	4.3e-29	69.81	PREDICTED: uncharacterized protein LOC8283469 [Ricinus communis]	[more]
gi\|731396728\|ref\|XP_010652624.1\|	2.1e-28	71.84	PREDICTED: uncharacterized protein LOC100855184 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001911	Ribosomal_S21

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.248980.1	Cucsa.248980.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001911	Ribosomal protein S21	PFAM	PF01165	Ribosomal_S21	coord: 31..83 score: 4.4
None	No IPR available	PANTHER	PTHR37228	FAMILY NOT NAMED	coord: 2..103 score: 7.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.248980	Cla017279	Watermelon (97103) v1	cgywmB466
Cucsa.248980	Csa3G689780	Cucumber (Chinese Long) v2	cgycuB356
Cucsa.248980	ClCG10G012250	Watermelon (Charleston Gray)	cgywcgB436
Cucsa.248980	CSPI03G29580	Wild cucumber (PI 183967)	cgycpiB372
Cucsa.248980	CmaCh14G009910	Cucurbita maxima (Rimu)	cgycmaB0692
Cucsa.248980	Cp4.1LG03g04690	Cucurbita pepo (Zucchini)	cgycpeB0660
Cucsa.248980	MELO3C030920.2	Melon (DHL92) v3.6.1	cgymedB415
Cucsa.248980	CsaV3_3G032030	Cucumber (Chinese Long) v3	cgycucB378
Cucsa.248980	Cla97C10G195080	Watermelon (97103) v2	cgywmbB438
Cucsa.248980	Bhi11G001169	Wax gourd	cgywgoB497
Cucsa.248980	Carg11212	Silver-seed gourd	carcgyB0933

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.248980	Cucurbita maxima (Rimu)	cgycmaB0693
Cucsa.248980	Cucurbita moschata (Rifu)	cgycmoB0692
Cucsa.248980	Cucurbita moschata (Rifu)	cgycmoB0693
Cucsa.248980	Melon (DHL92) v3.5.1	cgymeB420
Cucsa.248980	Cucurbita pepo (Zucchini)	cgycpeB0659
Cucsa.248980	Bottle gourd (USVL1VR-Ls)	cgylsiB407
Cucsa.248980	Silver-seed gourd	carcgyB0864