Cp4.1LG03g04690 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG03g04690
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionRibosomal protein S21 family protein
LocationCp4.1LG03 : 5376218 .. 5376532 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATTCGTTGTCGCGAAACCTATCATGCTCCATCAGATCTTCGTTGCACACCAATTGCCTGCAGCACCTTCACTATCAGCAGCAGCAATGGAGGGGGATTAGAGTGAAGGTACTGAATGGAAATTTGGAGCGGGCACTGACATTTTTGCAAAGGAAGATGCGATCGAGCGGAATTGAGCGGCTGATTAAGCGTGAACAGACTCATCATATAAAGAATTCTGAGAAACGAGTTTTGGCCAGAAAGAATTTGGAGCGCAAAATTCGATCGCAGGACCTCGCTCGCAAGCTCAAAGCCATCCTTATAAAGAAAGTC

mRNA sequence

ATGAATTCATCTTCGTTGCACACCAATTGCCTGCAGCACCTTCACTATCAGCAGCAGCAATGGAGGGGGATTAGAGTGAAGGTACTGAATGGAAATTTGGAGCGGGCACTGACATTTTTGCAAAGGAAGATGCGATCGAGCGGAATTGAGCGGCTGATTAAGCGTGAACAGACTCATCATATAAAGAATTCTGAGAAACGAGTTTTGGCCAGAAAGAATTTGGAGCGCAAAATTCGATCGCAGGACCTCGCTCGCAAGCTCAAAGCCATCCTTATAAAGAAAGTC

Coding sequence (CDS)

ATGAATTCATCTTCGTTGCACACCAATTGCCTGCAGCACCTTCACTATCAGCAGCAGCAATGGAGGGGGATTAGAGTGAAGGTACTGAATGGAAATTTGGAGCGGGCACTGACATTTTTGCAAAGGAAGATGCGATCGAGCGGAATTGAGCGGCTGATTAAGCGTGAACAGACTCATCATATAAAGAATTCTGAGAAACGAGTTTTGGCCAGAAAGAATTTGGAGCGCAAAATTCGATCGCAGGACCTCGCTCGCAAGCTCAAAGCCATCCTTATAAAGAAAGTC

Protein sequence

MNSSSLHTNCLQHLHYQQQQWRGIRVKVLNGNLERALTFLQRKMRSSGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILIKKV
Homology
[Close]
BLAST of Cp4.1LG03g04690 vs. TrEMBL
Match: A0A0A0LCD1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G689780 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 1.4e-29
Identity = 77/92 (83.70%), Postives = 81/92 (88.04%), Query Frame = 1 

Query: 4   SSLHTNCLQHLHYQQQQWRGIRVKVLNGNLERALTFLQRKMRSSGIERLIKREQTHHIKN 63
           SS+ TNCLQH     QQWRGIRVKVL G LERALT LQRKM+SSGIERLIKREQ HHIKN
Sbjct: 14  SSIPTNCLQH-----QQWRGIRVKVLRGGLERALTVLQRKMQSSGIERLIKREQVHHIKN 73

Query: 64  SEKRVLARKNLERKIRSQDLARKLKAILIKKV 96
           SEKRVLARK LERKI+S+DLARKLKAILIKKV
Sbjct: 74  SEKRVLARKTLERKIQSKDLARKLKAILIKKV 100

[Close]
BLAST of Cp4.1LG03g04690 vs. TrEMBL
Match: M5WS80_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021674mg PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 2.1e-28
Identity = 69/81 (85.19%), Postives = 77/81 (95.06%), Query Frame = 1 

Query: 15  HYQQQQWRGIRVKVLNGNLERALTFLQRKMRSSGIERLIKREQTHHIKNSEKRVLARKNL 74
           H++Q+QWRGIRVKVLNGNLE ALTF+QRKM+SSGIER+IK EQTHHIKNSEKRVLARKNL
Sbjct: 27  HHRQEQWRGIRVKVLNGNLESALTFMQRKMQSSGIERMIKHEQTHHIKNSEKRVLARKNL 86

Query: 75  ERKIRSQDLARKLKAILIKKV 96
           ER+I+SQDLARKLK IL KKV
Sbjct: 87  ERRIKSQDLARKLKVILSKKV 107

[Close]
BLAST of Cp4.1LG03g04690 vs. TrEMBL
Match: A0A067GR75_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g033045mg PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 3.5e-28
Identity = 70/80 (87.50%), Postives = 77/80 (96.25%), Query Frame = 1 

Query: 16  YQQQQWRGIRVKVLNGNLERALTFLQRKMRSSGIERLIKREQTHHIKNSEKRVLARKNLE 75
           +Q QQWRGIRVKV NGNLE+AL+++QRKM+SSGIERLIKREQ HHIKNSEKRVLARKNLE
Sbjct: 30  HQVQQWRGIRVKVFNGNLEQALSWMQRKMQSSGIERLIKREQRHHIKNSEKRVLARKNLE 89

Query: 76  RKIRSQDLARKLKAILIKKV 96
           RKIRSQDLARKLKAIL+KKV
Sbjct: 90  RKIRSQDLARKLKAILVKKV 109

[Close]
BLAST of Cp4.1LG03g04690 vs. TrEMBL
Match: A0A067H3F1_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g033045mg PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 3.5e-28
Identity = 70/80 (87.50%), Postives = 77/80 (96.25%), Query Frame = 1 

Query: 16  YQQQQWRGIRVKVLNGNLERALTFLQRKMRSSGIERLIKREQTHHIKNSEKRVLARKNLE 75
           +Q QQWRGIRVKV NGNLE+AL+++QRKM+SSGIERLIKREQ HHIKNSEKRVLARKNLE
Sbjct: 30  HQVQQWRGIRVKVFNGNLEQALSWMQRKMQSSGIERLIKREQRHHIKNSEKRVLARKNLE 89

Query: 76  RKIRSQDLARKLKAILIKKV 96
           RKIRSQDLARKLKAIL+KKV
Sbjct: 90  RKIRSQDLARKLKAILVKKV 109

[Close]
BLAST of Cp4.1LG03g04690 vs. TrEMBL
Match: V4TNP5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033123mg PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 3.5e-28
Identity = 70/80 (87.50%), Postives = 77/80 (96.25%), Query Frame = 1 

Query: 16  YQQQQWRGIRVKVLNGNLERALTFLQRKMRSSGIERLIKREQTHHIKNSEKRVLARKNLE 75
           +Q QQWRGIRVKV NGNLE+AL+++QRKM+SSGIERLIKREQ HHIKNSEKRVLARKNLE
Sbjct: 30  HQVQQWRGIRVKVFNGNLEQALSWMQRKMQSSGIERLIKREQRHHIKNSEKRVLARKNLE 89

Query: 76  RKIRSQDLARKLKAILIKKV 96
           RKIRSQDLARKLKAIL+KKV
Sbjct: 90  RKIRSQDLARKLKAILVKKV 109

[Close]
BLAST of Cp4.1LG03g04690 vs. TAIR10
Match: AT3G26360.1 (AT3G26360.1 Ribosomal protein S21 family protein)

HSP 1 Score: 106.7 bits (265), Expect = 8.1e-24
Identity = 59/82 (71.95%), Postives = 72/82 (87.80%), Query Frame = 1 

Query: 14 LHYQQQQWRGIRVKVLNGNLERALTFLQRKMRSSGIERLIKREQTHHIKNSEKRVLARKN 73
          L+ Q QQ RGIRVKV + +L++ALT LQ+KM+SSG+ERLIK  QTHHIKNSEK+VLARKN
Sbjct: 17 LNQQLQQERGIRVKVFSNDLDKALTILQKKMQSSGMERLIKGTQTHHIKNSEKKVLARKN 76

Query: 74 LERKIRSQDLARKLKAILIKKV 96
          LER+I+S D ARKL++ILIKKV
Sbjct: 77 LERRIKSIDFARKLQSILIKKV 98

[Close]
BLAST of Cp4.1LG03g04690 vs. NCBI nr
Match: gi|659123737|ref|XP_008461813.1| (PREDICTED: uncharacterized protein LOC103500324 [Cucumis melo])

HSP 1 Score: 138.7 bits (348), Expect = 5.4e-30
Identity = 78/92 (84.78%), Postives = 81/92 (88.04%), Query Frame = 1 

Query: 4   SSLHTNCLQHLHYQQQQWRGIRVKVLNGNLERALTFLQRKMRSSGIERLIKREQTHHIKN 63
           SS+HTNCLQ+     QQWRGIRVKVL G LERALT LQRKM+SSGIERLIKREQ HHIKN
Sbjct: 14  SSIHTNCLQY-----QQWRGIRVKVLKGGLERALTVLQRKMQSSGIERLIKREQIHHIKN 73

Query: 64  SEKRVLARKNLERKIRSQDLARKLKAILIKKV 96
           SEKRVLARK LERKIRSQDLARKLK ILIKKV
Sbjct: 74  SEKRVLARKTLERKIRSQDLARKLKDILIKKV 100

[Close]
BLAST of Cp4.1LG03g04690 vs. NCBI nr
Match: gi|449464006|ref|XP_004149720.1| (PREDICTED: uncharacterized protein LOC101216913 [Cucumis sativus])

HSP 1 Score: 136.7 bits (343), Expect = 2.1e-29
Identity = 77/92 (83.70%), Postives = 81/92 (88.04%), Query Frame = 1 

Query: 4   SSLHTNCLQHLHYQQQQWRGIRVKVLNGNLERALTFLQRKMRSSGIERLIKREQTHHIKN 63
           SS+ TNCLQH     QQWRGIRVKVL G LERALT LQRKM+SSGIERLIKREQ HHIKN
Sbjct: 14  SSIPTNCLQH-----QQWRGIRVKVLRGGLERALTVLQRKMQSSGIERLIKREQVHHIKN 73

Query: 64  SEKRVLARKNLERKIRSQDLARKLKAILIKKV 96
           SEKRVLARK LERKI+S+DLARKLKAILIKKV
Sbjct: 74  SEKRVLARKTLERKIQSKDLARKLKAILIKKV 100

[Close]
BLAST of Cp4.1LG03g04690 vs. NCBI nr
Match: gi|645246836|ref|XP_008229537.1| (PREDICTED: uncharacterized protein LOC103328903 [Prunus mume])

HSP 1 Score: 134.8 bits (338), Expect = 7.9e-29
Identity = 70/81 (86.42%), Postives = 78/81 (96.30%), Query Frame = 1 

Query: 15  HYQQQQWRGIRVKVLNGNLERALTFLQRKMRSSGIERLIKREQTHHIKNSEKRVLARKNL 74
           H++Q+QWRGIRVKV NGNLE ALTF+QRKM+SSGIER+IKREQTHHIKNSEKRVLARKNL
Sbjct: 27  HHRQEQWRGIRVKVFNGNLESALTFMQRKMQSSGIERMIKREQTHHIKNSEKRVLARKNL 86

Query: 75  ERKIRSQDLARKLKAILIKKV 96
           ER+I+SQDLARKLKAIL KKV
Sbjct: 87  ERRIKSQDLARKLKAILSKKV 107

[Close]
BLAST of Cp4.1LG03g04690 vs. NCBI nr
Match: gi|1009153169|ref|XP_015894492.1| (PREDICTED: uncharacterized protein LOC107428472 [Ziziphus jujuba])

HSP 1 Score: 133.7 bits (335), Expect = 1.8e-28
Identity = 70/80 (87.50%), Postives = 78/80 (97.50%), Query Frame = 1 

Query: 16  YQQQQWRGIRVKVLNGNLERALTFLQRKMRSSGIERLIKREQTHHIKNSEKRVLARKNLE 75
           +Q QQWRGIRVKVLNGNLE ALTF+QRKM+SSG+ERLIKREQTHHIKNSEKR+LARKNLE
Sbjct: 28  HQLQQWRGIRVKVLNGNLESALTFMQRKMQSSGMERLIKREQTHHIKNSEKRILARKNLE 87

Query: 76  RKIRSQDLARKLKAILIKKV 96
           RKIRSQ+LARKL+AIL+KKV
Sbjct: 88  RKIRSQELARKLQAILLKKV 107

[Close]
BLAST of Cp4.1LG03g04690 vs. NCBI nr
Match: gi|595859611|ref|XP_007210979.1| (hypothetical protein PRUPE_ppa021674mg [Prunus persica])

HSP 1 Score: 132.9 bits (333), Expect = 3.0e-28
Identity = 69/81 (85.19%), Postives = 77/81 (95.06%), Query Frame = 1 

Query: 15  HYQQQQWRGIRVKVLNGNLERALTFLQRKMRSSGIERLIKREQTHHIKNSEKRVLARKNL 74
           H++Q+QWRGIRVKVLNGNLE ALTF+QRKM+SSGIER+IK EQTHHIKNSEKRVLARKNL
Sbjct: 27  HHRQEQWRGIRVKVLNGNLESALTFMQRKMQSSGIERMIKHEQTHHIKNSEKRVLARKNL 86

Query: 75  ERKIRSQDLARKLKAILIKKV 96
           ER+I+SQDLARKLK IL KKV
Sbjct: 87  ERRIKSQDLARKLKVILSKKV 107

The following BLAST results are available for this feature:
BLAST of Cp4.1LG03g04690 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG03g04690 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LCD1_CUCSA1.4e-2983.70Uncharacterized protein OS=Cucumis sativus GN=Csa_3G689780 PE=4 SV=1[more]
M5WS80_PRUPE2.1e-2885.19Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021674mg PE=4 SV=1[more]
A0A067GR75_CITSI3.5e-2887.50Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g033045mg PE=4 SV=1[more]
A0A067H3F1_CITSI3.5e-2887.50Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g033045mg PE=4 SV=1[more]
V4TNP5_9ROSI3.5e-2887.50Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033123mg PE=4 SV=1[more]
BLAST of Cp4.1LG03g04690 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G26360.18.1e-2471.95 Ribosomal protein S21 family protein[more]
BLAST of Cp4.1LG03g04690 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659123737|ref|XP_008461813.1|5.4e-3084.78PREDICTED: uncharacterized protein LOC103500324 [Cucumis melo][more]
gi|449464006|ref|XP_004149720.1|2.1e-2983.70PREDICTED: uncharacterized protein LOC101216913 [Cucumis sativus][more]
gi|645246836|ref|XP_008229537.1|7.9e-2986.42PREDICTED: uncharacterized protein LOC103328903 [Prunus mume][more]
gi|1009153169|ref|XP_015894492.1|1.8e-2887.50PREDICTED: uncharacterized protein LOC107428472 [Ziziphus jujuba][more]
gi|595859611|ref|XP_007210979.1|3.0e-2885.19hypothetical protein PRUPE_ppa021674mg [Prunus persica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: INTERPRO
TermDefinition
IPR001911Ribosomal_S21
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG03g04690.1Cp4.1LG03g04690.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001911Ribosomal protein S21PFAMPF01165Ribosomal_S21coord: 26..79
score: 8.6
NoneNo IPR availablePANTHERPTHR37228FAMILY NOT NAMEDcoord: 14..95
score: 3.1
NoneNo IPR availablePANTHERPTHR37228:SF1RIBOSOMAL PROTEIN S21 FAMILY PROTEINcoord: 14..95
score: 3.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG03g04690Cucsa.248980Cucumber (Gy14) v1cgycpeB0660
Cp4.1LG03g04690CmaCh14G009910Cucurbita maxima (Rimu)cmacpeB283
Cp4.1LG03g04690Cla017279Watermelon (97103) v1cpewmB595
Cp4.1LG03g04690Csa3G689780Cucumber (Chinese Long) v2cpecuB599
Cp4.1LG03g04690ClCG10G012250Watermelon (Charleston Gray)cpewcgB544
Cp4.1LG03g04690CSPI03G29580Wild cucumber (PI 183967)cpecpiB601
Cp4.1LG03g04690MELO3C030920.2Melon (DHL92) v3.6.1cpemedB673
Cp4.1LG03g04690CsaV3_3G032030Cucumber (Chinese Long) v3cpecucB0748
Cp4.1LG03g04690Bhi11G001169Wax gourdcpewgoB0742
Cp4.1LG03g04690Carg11212Silver-seed gourdcarcpeB1147
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG03g04690Cucurbita pepo (Zucchini)cpecpeB185
Cp4.1LG03g04690Cucurbita pepo (Zucchini)cpecpeB336
Cp4.1LG03g04690Cucurbita pepo (Zucchini)cpecpeB449
Cp4.1LG03g04690Cucumber (Gy14) v1cgycpeB0337
Cp4.1LG03g04690Cucurbita maxima (Rimu)cmacpeB404
Cp4.1LG03g04690Cucurbita maxima (Rimu)cmacpeB494
Cp4.1LG03g04690Cucurbita maxima (Rimu)cmacpeB927
Cp4.1LG03g04690Cucurbita moschata (Rifu)cmocpeB245
Cp4.1LG03g04690Cucurbita moschata (Rifu)cmocpeB367
Cp4.1LG03g04690Cucurbita moschata (Rifu)cmocpeB453
Cp4.1LG03g04690Cucurbita moschata (Rifu)cmocpeB861
Cp4.1LG03g04690Wild cucumber (PI 183967)cpecpiB637
Cp4.1LG03g04690Cucumber (Chinese Long) v2cpecuB633
Cp4.1LG03g04690Bottle gourd (USVL1VR-Ls)cpelsiB494
Cp4.1LG03g04690Bottle gourd (USVL1VR-Ls)cpelsiB500
Cp4.1LG03g04690Watermelon (Charleston Gray)cpewcgB543
Cp4.1LG03g04690Watermelon (97103) v1cpewmB594
Cp4.1LG03g04690Melon (DHL92) v3.5.1cpemeB559
Cp4.1LG03g04690Melon (DHL92) v3.5.1cpemeB566
Cp4.1LG03g04690Cucumber (Gy14) v2cgybcpeB396
Cp4.1LG03g04690Cucumber (Gy14) v2cgybcpeB957
Cp4.1LG03g04690Melon (DHL92) v3.6.1cpemedB665
Cp4.1LG03g04690Silver-seed gourdcarcpeB0634
Cp4.1LG03g04690Silver-seed gourdcarcpeB1073
Cp4.1LG03g04690Cucumber (Chinese Long) v3cpecucB0789