Cucsa.244500 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.244500
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
Description40S ribosomal protein S16
Locationscaffold02135 : 360313 .. 361259 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GCTTTCACCATCTGTTTACAATTGAAGTCCTTCACTCCGATACTTCTCTCAAGCCCTAGCAATGGCGGCTCCGATCGAATCGGTGCAATGTTTTGGACGTAAGAAGACGGCGGTTGCCGTCACCTACTGCAAGCGCGGCAGGGGCTTGATTAAGATCAATGGCTGCCCAATCGAGCTTGTTGAGCCAGAGATCTTGCGCTTCAAGGCCTACGAGCCCATCCTCCTCCTTGGACGTCACCGTTTCTCTGGTGTTGATATGCGCATCAGAGTGAAGGGTGGAGGTCACACCTCCCAGATCTATGCCATCCGTCAGAGTATTGCCAAGGCTCTTGTTGCCTTCTACCAGAAATACGTGGATGAGCAAAGCAAGAAGGAGATTAAAGATATTCTGGTCAGGTATGACAGGACTTTGCTTGTTGCTGATCCTAGGCGCTGTGAGCCCAAGAAGTTTGGTGGTCGTGGTGCTCGTGCTAGGTTTCAGAAGTCATACCGTTGATCGAAGAGTACTAGGGAACTATTGCGGAGACTTGTTAGTCGGTAATGATAATTTGTTTTGGTTTTTGAGTTTACATAGCTTTGAAGACTTTAAAATTATGGTTCTGTTTATGCTTTAGTATAAGTATTTGGAATTTGAAGACTTGAGTTTTCGTTGATATCGCGATAATTGCACAACCAAAATGTTTTTTGAAACATCTTGATTTTCTGTTTGTGTTAGATTATTGTGCGTGCAAAATGGACCACAGTTATCTTATGTGACAGATTTTTGTTGTTGATGATGATCATTTACCTATTGAGCTTTTTGTTATTTGGGATATCTTTTAGATAAGTATTTGTCTATTGGGGCTCTTTAGAGTTTCTGAAATATCTTTAGTACTTTTCTTTTTTGGTTTCTTTATTTCTATTGTTCTTCAATGCGTCTGTAAATACTACCTGGGTTATCAATGCAC

mRNA sequence

GCTTTCACCATCTGTTTACAATTGAAGTCCTTCACTCCGATACTTCTCTCAAGCCCTAGCAATGGCGGCTCCGATCGAATCGGTGCAATGTTTTGGACGTAAGAAGACGGCGGTTGCCGTCACCTACTGCAAGCGCGGCAGGGGCTTGATTAAGATCAATGGCTGCCCAATCGAGCTTGTTGAGCCAGAGATCTTGCGCTTCAAGGCCTACGAGCCCATCCTCCTCCTTGGACGTCACCGTTTCTCTGGTGTTGATATGCGCATCAGAGTGAAGGGTGGAGGTCACACCTCCCAGATCTATGCCATCCGTCAGAGTATTGCCAAGGCTCTTGTTGCCTTCTACCAGAAATACGTGGATGAGCAAAGCAAGAAGGAGATTAAAGATATTCTGGTCAGGTATGACAGGACTTTGCTTGTTGCTGATCCTAGGCGCTGTGAGCCCAAGAAGTTTGGTGGTCGTGGTGCTCGTGCTAGGTTTCAGAAGTCATACCGTTGATCGAAGAGTACTAGGGAACTATTGCGGAGACTTGTTAGTCGGTAATGATAATTTGTTTTGGTTTTTGAGTTTACATAGCTTTGAAGACTTTAAAATTATGGTTCTGTTTATGCTTTAGTATAAGTATTTGGAATTTGAAGACTTGAGTTTTCGTTGATATCGCGATAATTGCACAACCAAAATGTTTTTTGAAACATCTTGATTTTCTGTTTGTGTTAGATTATTGTGCGTGCAAAATGGACCACAGTTATCTTATGTGACAGATTTTTGTTGTTGATGATGATCATTTACCTATTGAGCTTTTTGTTATTTGGGATATCTTTTAGATAAGTATTTGTCTATTGGGGCTCTTTAGAGTTTCTGAAATATCTTTAGTACTTTTCTTTTTTGGTTTCTTTATTTCTATTGTTCTTCAATGCGTCTGTAAATACTACCTGGGTTATCAATGCAC

Coding sequence (CDS)

ATGGCGGCTCCGATCGAATCGGTGCAATGTTTTGGACGTAAGAAGACGGCGGTTGCCGTCACCTACTGCAAGCGCGGCAGGGGCTTGATTAAGATCAATGGCTGCCCAATCGAGCTTGTTGAGCCAGAGATCTTGCGCTTCAAGGCCTACGAGCCCATCCTCCTCCTTGGACGTCACCGTTTCTCTGGTGTTGATATGCGCATCAGAGTGAAGGGTGGAGGTCACACCTCCCAGATCTATGCCATCCGTCAGAGTATTGCCAAGGCTCTTGTTGCCTTCTACCAGAAATACGTGGATGAGCAAAGCAAGAAGGAGATTAAAGATATTCTGGTCAGGTATGACAGGACTTTGCTTGTTGCTGATCCTAGGCGCTGTGAGCCCAAGAAGTTTGGTGGTCGTGGTGCTCGTGCTAGGTTTCAGAAGTCATACCGTTGA

Protein sequence

MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR*
Homology
[Close]
BLAST of Cucsa.244500 vs. Swiss-Prot
Match: RS16_GOSHI (40S ribosomal protein S16 OS=Gossypium hirsutum GN=RPS16 PE=2 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 8.8e-72
Identity = 135/140 (96.43%), Postives = 137/140 (97.86%), Query Frame = 1 

Query: 5   IESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFSGV 64
           IESVQCFGRKKTAVAVT+CKRGRGLIKINGCPIELVEPEILRFKA EPILLLGR RF+GV
Sbjct: 6   IESVQCFGRKKTAVAVTHCKRGRGLIKINGCPIELVEPEILRFKAVEPILLLGRQRFTGV 65

Query: 65  DMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRR 124
           DMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILV YDRTLLVADPRR
Sbjct: 66  DMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVGYDRTLLVADPRR 125

Query: 125 CEPKKFGGRGARARFQKSYR 145
           CEPKKFGGRGARARFQKSYR
Sbjct: 126 CEPKKFGGRGARARFQKSYR 145

[Close]
BLAST of Cucsa.244500 vs. Swiss-Prot
Match: RS16_FRIAG (40S ribosomal protein S16 OS=Fritillaria agrestis GN=RPS16 PE=2 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 1.5e-68
Identity = 128/145 (88.28%), Postives = 139/145 (95.86%), Query Frame = 1 

Query: 1   MAAPI-ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRH 60
           MA P  ESVQCFGRKKTAVAVT+CKRGRGLIK+NG PIELV+PEILR+KA+EPILLLGRH
Sbjct: 1   MATPATESVQCFGRKKTAVAVTHCKRGRGLIKVNGSPIELVKPEILRYKAFEPILLLGRH 60

Query: 61  RFSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLV 120
           RF GVDMRIRV+GGG TSQIYAIRQSIAKALVA+YQKYVDEQ+KKE+KDIL+RYDRTLLV
Sbjct: 61  RFVGVDMRIRVRGGGKTSQIYAIRQSIAKALVAYYQKYVDEQAKKEVKDILMRYDRTLLV 120

Query: 121 ADPRRCEPKKFGGRGARARFQKSYR 145
           ADPRRCEPKKFGGRGAR+RFQKSYR
Sbjct: 121 ADPRRCEPKKFGGRGARSRFQKSYR 145

[Close]
BLAST of Cucsa.244500 vs. Swiss-Prot
Match: RS161_ARATH (40S ribosomal protein S16-1 OS=Arabidopsis thaliana GN=RPS16A PE=2 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 2.0e-68
Identity = 124/139 (89.21%), Postives = 135/139 (97.12%), Query Frame = 1 

Query: 6   ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFSGVD 65
           ESVQCFGRKKTAVAVT+CKRG GLIK+NGCPIEL +PEILRFK +EPILLLG+HRF+GV+
Sbjct: 8   ESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPILLLGKHRFAGVN 67

Query: 66  MRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 125
           MRIRV GGGHTSQ+YAIRQSIAKALVA+YQKYVDEQSKKEIKDILVRYDRTLLVADPRRC
Sbjct: 68  MRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 127

Query: 126 EPKKFGGRGARARFQKSYR 145
           EPKKFGGRGAR+R+QKSYR
Sbjct: 128 EPKKFGGRGARSRYQKSYR 146

[Close]
BLAST of Cucsa.244500 vs. Swiss-Prot
Match: RS163_ARATH (40S ribosomal protein S16-3 OS=Arabidopsis thaliana GN=RPS16C PE=2 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 2.6e-68
Identity = 123/139 (88.49%), Postives = 135/139 (97.12%), Query Frame = 1 

Query: 6   ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFSGVD 65
           ESVQCFGRKKTAVAVT+CKRG GLIK+NGCPIEL +PEILRFK +EP+LLLG+HRF+GV+
Sbjct: 8   ESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPVLLLGKHRFAGVN 67

Query: 66  MRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 125
           MRIRV GGGHTSQ+YAIRQSIAKALVA+YQKYVDEQSKKEIKDILVRYDRTLLVADPRRC
Sbjct: 68  MRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 127

Query: 126 EPKKFGGRGARARFQKSYR 145
           EPKKFGGRGAR+R+QKSYR
Sbjct: 128 EPKKFGGRGARSRYQKSYR 146

[Close]
BLAST of Cucsa.244500 vs. Swiss-Prot
Match: RS16_TORRU (40S ribosomal protein S16 OS=Tortula ruralis GN=RPS16 PE=2 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 1.2e-65
Identity = 122/142 (85.92%), Postives = 137/142 (96.48%), Query Frame = 1 

Query: 3   APIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFS 62
           A +ESVQCFGRKKTAVAVTYC+RGRGLI++   PIELVEPEILR+KA+EP+LLLGR +F+
Sbjct: 2   AAVESVQCFGRKKTAVAVTYCRRGRGLIRLT-VPIELVEPEILRYKAFEPVLLLGRSKFA 61

Query: 63  GVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADP 122
           GVDMRIRVKGGG+TSQIYAIRQSIAKALVA++QKYVDEQSKKEIKD+L+RYDRTLLVADP
Sbjct: 62  GVDMRIRVKGGGNTSQIYAIRQSIAKALVAYFQKYVDEQSKKEIKDVLLRYDRTLLVADP 121

Query: 123 RRCEPKKFGGRGARARFQKSYR 145
           RRCEPKKFGGRGAR+RFQKSYR
Sbjct: 122 RRCEPKKFGGRGARSRFQKSYR 142

[Close]
BLAST of Cucsa.244500 vs. TrEMBL
Match: A0A0A0L6F6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G202730 PE=3 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 1.2e-75
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 1 

Query: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60
           MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR
Sbjct: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60

Query: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120
           FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA
Sbjct: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120

Query: 121 DPRRCEPKKFGGRGARARFQKSYR 145
           DPRRCEPKKFGGRGARARFQKSYR
Sbjct: 121 DPRRCEPKKFGGRGARARFQKSYR 144

[Close]
BLAST of Cucsa.244500 vs. TrEMBL
Match: A0A067L229_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00289 PE=3 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 1.0e-74
Identity = 142/143 (99.30%), Postives = 143/143 (100.00%), Query Frame = 1 

Query: 2   AAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF 61
           AAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF
Sbjct: 3   AAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF 62

Query: 62  SGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD 121
           +GVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD
Sbjct: 63  AGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD 122

Query: 122 PRRCEPKKFGGRGARARFQKSYR 145
           PRRCEPKKFGGRGARARFQKSYR
Sbjct: 123 PRRCEPKKFGGRGARARFQKSYR 145

[Close]
BLAST of Cucsa.244500 vs. TrEMBL
Match: I3NMP6_HEVBR (40S ribosomal protein S16A OS=Hevea brasiliensis GN=RPS16A PE=2 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 1.0e-74
Identity = 142/143 (99.30%), Postives = 143/143 (100.00%), Query Frame = 1 

Query: 2   AAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF 61
           AAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF
Sbjct: 5   AAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF 64

Query: 62  SGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD 121
           +GVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD
Sbjct: 65  AGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD 124

Query: 122 PRRCEPKKFGGRGARARFQKSYR 145
           PRRCEPKKFGGRGARARFQKSYR
Sbjct: 125 PRRCEPKKFGGRGARARFQKSYR 147

[Close]
BLAST of Cucsa.244500 vs. TrEMBL
Match: A5ASC2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g02990 PE=3 SV=1)

HSP 1 Score: 286.2 bits (731), Expect = 2.2e-74
Identity = 141/144 (97.92%), Postives = 143/144 (99.31%), Query Frame = 1 

Query: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60
           MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIEL+EPEILR KAYEPILLLGRHR
Sbjct: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELIEPEILRHKAYEPILLLGRHR 60

Query: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120
           F+GVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA
Sbjct: 61  FAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120

Query: 121 DPRRCEPKKFGGRGARARFQKSYR 145
           DPRRCEPKKFGGRGARARFQKSYR
Sbjct: 121 DPRRCEPKKFGGRGARARFQKSYR 144

[Close]
BLAST of Cucsa.244500 vs. TrEMBL
Match: G9F9P5_HEVBR (Putative ribosomal protein S9 (Fragment) OS=Hevea brasiliensis PE=2 SV=1)

HSP 1 Score: 286.2 bits (731), Expect = 2.2e-74
Identity = 141/143 (98.60%), Postives = 143/143 (100.00%), Query Frame = 1 

Query: 2   AAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF 61
           +APIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF
Sbjct: 1   SAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF 60

Query: 62  SGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD 121
           +GVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD
Sbjct: 61  AGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD 120

Query: 122 PRRCEPKKFGGRGARARFQKSYR 145
           PRRCEPKKFGGRGARARFQKSYR
Sbjct: 121 PRRCEPKKFGGRGARARFQKSYR 143

[Close]
BLAST of Cucsa.244500 vs. TAIR10
Match: AT2G09990.1 (AT2G09990.1 Ribosomal protein S5 domain 2-like superfamily protein)

HSP 1 Score: 259.6 bits (662), Expect = 1.1e-69
Identity = 124/139 (89.21%), Postives = 135/139 (97.12%), Query Frame = 1 

Query: 6   ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFSGVD 65
           ESVQCFGRKKTAVAVT+CKRG GLIK+NGCPIEL +PEILRFK +EPILLLG+HRF+GV+
Sbjct: 8   ESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPILLLGKHRFAGVN 67

Query: 66  MRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 125
           MRIRV GGGHTSQ+YAIRQSIAKALVA+YQKYVDEQSKKEIKDILVRYDRTLLVADPRRC
Sbjct: 68  MRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 127

Query: 126 EPKKFGGRGARARFQKSYR 145
           EPKKFGGRGAR+R+QKSYR
Sbjct: 128 EPKKFGGRGARSRYQKSYR 146

[Close]
BLAST of Cucsa.244500 vs. TAIR10
Match: AT5G18380.1 (AT5G18380.1 Ribosomal protein S5 domain 2-like superfamily protein)

HSP 1 Score: 259.2 bits (661), Expect = 1.5e-69
Identity = 123/139 (88.49%), Postives = 135/139 (97.12%), Query Frame = 1 

Query: 6   ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFSGVD 65
           ESVQCFGRKKTAVAVT+CKRG GLIK+NGCPIEL +PEILRFK +EP+LLLG+HRF+GV+
Sbjct: 8   ESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPVLLLGKHRFAGVN 67

Query: 66  MRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 125
           MRIRV GGGHTSQ+YAIRQSIAKALVA+YQKYVDEQSKKEIKDILVRYDRTLLVADPRRC
Sbjct: 68  MRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 127

Query: 126 EPKKFGGRGARARFQKSYR 145
           EPKKFGGRGAR+R+QKSYR
Sbjct: 128 EPKKFGGRGARSRYQKSYR 146

[Close]
BLAST of Cucsa.244500 vs. TAIR10
Match: AT3G04230.1 (AT3G04230.1 Ribosomal protein S5 domain 2-like superfamily protein)

HSP 1 Score: 246.1 bits (627), Expect = 1.3e-65
Identity = 118/139 (84.89%), Postives = 130/139 (93.53%), Query Frame = 1 

Query: 6   ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFSGVD 65
           ESVQCFGRKKTA AVTYCKRG G+IK+NG PIEL +PEILRFK +EP+LLLG+HRF+GVD
Sbjct: 8   ESVQCFGRKKTATAVTYCKRGSGMIKLNGSPIELYQPEILRFKIFEPVLLLGKHRFAGVD 67

Query: 66  MRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 125
           MRIR  GGG+TS++YAIRQSIAKALVA+YQKYVDEQSKKEIKDIL+RYDRTLLVADPRRC
Sbjct: 68  MRIRATGGGNTSRVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILMRYDRTLLVADPRRC 127

Query: 126 EPKKFGGRGARARFQKSYR 145
           E KKFGG GARARFQKSYR
Sbjct: 128 ESKKFGGPGARARFQKSYR 146

[Close]
BLAST of Cucsa.244500 vs. NCBI nr
Match: gi|449438394|ref|XP_004136973.1| (PREDICTED: 40S ribosomal protein S16 [Cucumis sativus])

HSP 1 Score: 290.4 bits (742), Expect = 1.7e-75
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 1 

Query: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60
           MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR
Sbjct: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60

Query: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120
           FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA
Sbjct: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120

Query: 121 DPRRCEPKKFGGRGARARFQKSYR 145
           DPRRCEPKKFGGRGARARFQKSYR
Sbjct: 121 DPRRCEPKKFGGRGARARFQKSYR 144

[Close]
BLAST of Cucsa.244500 vs. NCBI nr
Match: gi|802563143|ref|XP_012066736.1| (PREDICTED: 40S ribosomal protein S16 [Jatropha curcas])

HSP 1 Score: 287.3 bits (734), Expect = 1.4e-74
Identity = 142/143 (99.30%), Postives = 143/143 (100.00%), Query Frame = 1 

Query: 2   AAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF 61
           AAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF
Sbjct: 3   AAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF 62

Query: 62  SGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD 121
           +GVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD
Sbjct: 63  AGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD 122

Query: 122 PRRCEPKKFGGRGARARFQKSYR 145
           PRRCEPKKFGGRGARARFQKSYR
Sbjct: 123 PRRCEPKKFGGRGARARFQKSYR 145

[Close]
BLAST of Cucsa.244500 vs. NCBI nr
Match: gi|313586545|gb|ADR71283.1| (40S ribosomal protein S16A [Hevea brasiliensis])

HSP 1 Score: 287.3 bits (734), Expect = 1.4e-74
Identity = 142/143 (99.30%), Postives = 143/143 (100.00%), Query Frame = 1 

Query: 2   AAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF 61
           AAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF
Sbjct: 5   AAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF 64

Query: 62  SGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD 121
           +GVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD
Sbjct: 65  AGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD 124

Query: 122 PRRCEPKKFGGRGARARFQKSYR 145
           PRRCEPKKFGGRGARARFQKSYR
Sbjct: 125 PRRCEPKKFGGRGARARFQKSYR 147

[Close]
BLAST of Cucsa.244500 vs. NCBI nr
Match: gi|225432586|ref|XP_002281350.1| (PREDICTED: 40S ribosomal protein S16 [Vitis vinifera])

HSP 1 Score: 286.2 bits (731), Expect = 3.2e-74
Identity = 141/144 (97.92%), Postives = 143/144 (99.31%), Query Frame = 1 

Query: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60
           MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIEL+EPEILR KAYEPILLLGRHR
Sbjct: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELIEPEILRHKAYEPILLLGRHR 60

Query: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120
           F+GVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA
Sbjct: 61  FAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120

Query: 121 DPRRCEPKKFGGRGARARFQKSYR 145
           DPRRCEPKKFGGRGARARFQKSYR
Sbjct: 121 DPRRCEPKKFGGRGARARFQKSYR 144

[Close]
BLAST of Cucsa.244500 vs. NCBI nr
Match: gi|590657854|ref|XP_007034683.1| (Ribosomal protein S5 domain 2-like superfamily protein [Theobroma cacao])

HSP 1 Score: 286.2 bits (731), Expect = 3.2e-74
Identity = 140/144 (97.22%), Postives = 144/144 (100.00%), Query Frame = 1 

Query: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60
           MAAP+ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILR+KAYEPILLLGRHR
Sbjct: 1   MAAPVESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRYKAYEPILLLGRHR 60

Query: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120
           F+GVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQK+VDEQSKKEIKDILVRYDRTLLVA
Sbjct: 61  FAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKFVDEQSKKEIKDILVRYDRTLLVA 120

Query: 121 DPRRCEPKKFGGRGARARFQKSYR 145
           DPRRCEPKKFGGRGARARFQKSYR
Sbjct: 121 DPRRCEPKKFGGRGARARFQKSYR 144

The following BLAST results are available for this feature:
BLAST of Cucsa.244500 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RS16_GOSHI8.8e-7296.4340S ribosomal protein S16 OS=Gossypium hirsutum GN=RPS16 PE=2 SV=1[more]
RS16_FRIAG1.5e-6888.2840S ribosomal protein S16 OS=Fritillaria agrestis GN=RPS16 PE=2 SV=1[more]
RS161_ARATH2.0e-6889.2140S ribosomal protein S16-1 OS=Arabidopsis thaliana GN=RPS16A PE=2 SV=1[more]
RS163_ARATH2.6e-6888.4940S ribosomal protein S16-3 OS=Arabidopsis thaliana GN=RPS16C PE=2 SV=1[more]
RS16_TORRU1.2e-6585.9240S ribosomal protein S16 OS=Tortula ruralis GN=RPS16 PE=2 SV=1[more]
BLAST of Cucsa.244500 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L6F6_CUCSA1.2e-75100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G202730 PE=3 SV=1[more]
A0A067L229_JATCU1.0e-7499.30Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00289 PE=3 SV=1[more]
I3NMP6_HEVBR1.0e-7499.3040S ribosomal protein S16A OS=Hevea brasiliensis GN=RPS16A PE=2 SV=1[more]
A5ASC2_VITVI2.2e-7497.92Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g02990 PE=3 SV=... [more]
G9F9P5_HEVBR2.2e-7498.60Putative ribosomal protein S9 (Fragment) OS=Hevea brasiliensis PE=2 SV=1[more]
BLAST of Cucsa.244500 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G09990.11.1e-6989.21 Ribosomal protein S5 domain 2-like superfamily protein[more]
AT5G18380.11.5e-6988.49 Ribosomal protein S5 domain 2-like superfamily protein[more]
AT3G04230.11.3e-6584.89 Ribosomal protein S5 domain 2-like superfamily protein[more]
BLAST of Cucsa.244500 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449438394|ref|XP_004136973.1|1.7e-75100.00PREDICTED: 40S ribosomal protein S16 [Cucumis sativus][more]
gi|802563143|ref|XP_012066736.1|1.4e-7499.30PREDICTED: 40S ribosomal protein S16 [Jatropha curcas][more]
gi|313586545|gb|ADR71283.1|1.4e-7499.3040S ribosomal protein S16A [Hevea brasiliensis][more]
gi|225432586|ref|XP_002281350.1|3.2e-7497.92PREDICTED: 40S ribosomal protein S16 [Vitis vinifera][more]
gi|590657854|ref|XP_007034683.1|3.2e-7497.22Ribosomal protein S5 domain 2-like superfamily protein [Theobroma cacao][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.244500.1Cucsa.244500.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.244500Cla013082Watermelon (97103) v1cgywmB462
Cucsa.244500Cla016020Watermelon (97103) v1cgywmB463
Cucsa.244500Csa3G202730Cucumber (Chinese Long) v2cgycuB350
Cucsa.244500Csa7G073560Cucumber (Chinese Long) v2cgycuB351
Cucsa.244500MELO3C019524Melon (DHL92) v3.5.1cgymeB417
Cucsa.244500MELO3C018459Melon (DHL92) v3.5.1cgymeB416
Cucsa.244500ClCG05G010150Watermelon (Charleston Gray)cgywcgB433
Cucsa.244500ClCG02G006030Watermelon (Charleston Gray)cgywcgB432
Cucsa.244500CSPI03G18320Wild cucumber (PI 183967)cgycpiB366
Cucsa.244500CSPI07G07540Wild cucumber (PI 183967)cgycpiB367
Cucsa.244500CmaCh11G017420Cucurbita maxima (Rimu)cgycmaB0684
Cucsa.244500CmaCh16G003520Cucurbita maxima (Rimu)cgycmaB0685
Cucsa.244500CmaCh19G005990Cucurbita maxima (Rimu)cgycmaB0686
Cucsa.244500CmaCh04G004810Cucurbita maxima (Rimu)cgycmaB0687
Cucsa.244500CmoCh04G005160Cucurbita moschata (Rifu)cgycmoB0687
Cucsa.244500CmoCh19G006170Cucurbita moschata (Rifu)cgycmoB0686
Cucsa.244500CmoCh16G003760Cucurbita moschata (Rifu)cgycmoB0685
Cucsa.244500CmoCh11G013730Cucurbita moschata (Rifu)cgycmoB0684
Cucsa.244500Lsi05G002240Bottle gourd (USVL1VR-Ls)cgylsiB404
Cucsa.244500Lsi03G005020Bottle gourd (USVL1VR-Ls)cgylsiB403
Cucsa.244500Cp4.1LG01g02420Cucurbita pepo (Zucchini)cgycpeB0654
Cucsa.244500Cp4.1LG14g04260Cucurbita pepo (Zucchini)cgycpeB0652
Cucsa.244500Cp4.1LG15g04770Cucurbita pepo (Zucchini)cgycpeB0653
Cucsa.244500MELO3C018459.2Melon (DHL92) v3.6.1cgymedB411
Cucsa.244500MELO3C019524.2Melon (DHL92) v3.6.1cgymedB412
Cucsa.244500CsaV3_3G018380Cucumber (Chinese Long) v3cgycucB369
Cucsa.244500CsaV3_7G008490Cucumber (Chinese Long) v3cgycucB370
Cucsa.244500Cla97C02G033000Watermelon (97103) v2cgywmbB434
Cucsa.244500Cla97C05G092540Watermelon (97103) v2cgywmbB435
Cucsa.244500Bhi05G000929Wax gourdcgywgoB494
Cucsa.244500Bhi01G001267Wax gourdcgywgoB493
Cucsa.244500Carg22072Silver-seed gourdcarcgyB0253
Cucsa.244500Carg08151Silver-seed gourdcarcgyB0436
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cucsa.244500Cucsa.219770Cucumber (Gy14) v1cgycgyB117
The following block(s) are covering this gene:

None