Carg22072 (gene) Silver-seed gourd

Overview
NameCarg22072
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionRibosomal protein S16
LocationCucurbita_argyrosperma_scaffold_175 : 485791 .. 486225 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGCTCCGATTGAGTCGGTTCAGTGTTTCGGCCGGAAAAAGACGGCGGTGGCTGTGACATACTGCAAGCGTGGTAGGGGTTTGATTAAGATCAATGGATGCCCAATTGAACTCGTGGAGCCGGAGATCCTTCGTTTTAAGGCTTATGAGCCTATCCTCCTCCTTGGACGACACAGGTTCTCTGGAGTCGACATGCGTATCAGAGTGAAGGGTGGAGGTCACACGTCGCAGATTTACGCCATCCGTCAGAGCATTGCGAAGGCCTTGGTCGCGTTCTACCAGAAGTATGTGGATGAGCAGAGCAAGAAGGAAATCAAGGACATCTTGGTCAGGTACGACAGGACTTTGCTGGTCGCTGATCCCCGACGCTGCGAGCCCAAGAAGTTTGGTGGTCGTGGAGCTCGTGCGAGGTTCCAGAAATCTTACCGTTGA

mRNA sequence

ATGGCTGCTCCGATTGAGTCGGTTCAGTGTTTCGGCCGGAAAAAGACGGCGGTGGCTGTGACATACTGCAAGCGTGGTAGGGGTTTGATTAAGATCAATGGATGCCCAATTGAACTCGTGGAGCCGGAGATCCTTCGTTTTAAGGCTTATGAGCCTATCCTCCTCCTTGGACGACACAGGTTCTCTGGAGTCGACATGCGTATCAGAGTGAAGGGTGGAGGTCACACGTCGCAGATTTACGCCATCCGTCAGAGCATTGCGAAGGCCTTGGTCGCGTTCTACCAGAAGTATGTGGATGAGCAGAGCAAGAAGGAAATCAAGGACATCTTGGTCAGGTACGACAGGACTTTGCTGGTCGCTGATCCCCGACGCTGCGAGCCCAAGAAGTTTGGTGGTCGTGGAGCTCGTGCGAGGTTCCAGAAATCTTACCGTTGA

Coding sequence (CDS)

ATGGCTGCTCCGATTGAGTCGGTTCAGTGTTTCGGCCGGAAAAAGACGGCGGTGGCTGTGACATACTGCAAGCGTGGTAGGGGTTTGATTAAGATCAATGGATGCCCAATTGAACTCGTGGAGCCGGAGATCCTTCGTTTTAAGGCTTATGAGCCTATCCTCCTCCTTGGACGACACAGGTTCTCTGGAGTCGACATGCGTATCAGAGTGAAGGGTGGAGGTCACACGTCGCAGATTTACGCCATCCGTCAGAGCATTGCGAAGGCCTTGGTCGCGTTCTACCAGAAGTATGTGGATGAGCAGAGCAAGAAGGAAATCAAGGACATCTTGGTCAGGTACGACAGGACTTTGCTGGTCGCTGATCCCCGACGCTGCGAGCCCAAGAAGTTTGGTGGTCGTGGAGCTCGTGCGAGGTTCCAGAAATCTTACCGTTGA

Protein sequence

MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR
Homology
[Close]
BLAST of Carg22072 vs. NCBI nr
Match: XP_004136973.1 (PREDICTED: 40S ribosomal protein S16 [Cucumis sativus] >XP_004140706.1 PREDICTED: 40S ribosomal protein S16 [Cucumis sativus] >XP_004149967.1 PREDICTED: 40S ribosomal protein S16 [Cucumis sativus] >XP_008454961.1 PREDICTED: 40S ribosomal protein S16 [Cucumis melo] >XP_008456099.1 PREDICTED: 40S ribosomal protein S16 [Cucumis melo] >XP_008456141.1 PREDICTED: 40S ribosomal protein S16 [Cucumis melo] >XP_022136342.1 40S ribosomal protein S16 [Momordica charantia] >XP_022149129.1 40S ribosomal protein S16 [Momordica charantia] >XP_022943042.1 40S ribosomal protein S16-like [Cucurbita moschata] >XP_022943043.1 40S ribosomal protein S16-like [Cucurbita moschata] >XP_022952362.1 40S ribosomal protein S16-like [Cucurbita moschata] >XP_022927908.1 40S ribosomal protein S16-like [Cucurbita moschata] >XP_022983243.1 40S ribosomal protein S16-like [Cucurbita maxima] >XP_022972375.1 40S ribosomal protein S16-like [Cucurbita maxima] >XP_023535994.1 40S ribosomal protein S16-like [Cucurbita pepo subsp. pepo] >XP_023553863.1 40S ribosomal protein S16-like [Cucurbita pepo subsp. pepo] >KGN43920.1 hypothetical protein Csa_7G073560 [Cucumis sativus] >KGN57515.1 hypothetical protein Csa_3G202730 [Cucumis sativus] >KGN57574.1 hypothetical protein Csa_3G215620 [Cucumis sativus])

HSP 1 Score: 290.8 bits (743), Expect = 2.5e-75
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0 

Query: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60
           MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR
Sbjct: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60

Query: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120
           FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA
Sbjct: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120

Query: 121 DPRRCEPKKFGGRGARARFQKSYR 145
           DPRRCEPKKFGGRGARARFQKSYR
Sbjct: 121 DPRRCEPKKFGGRGARARFQKSYR 144

[Close]
BLAST of Carg22072 vs. NCBI nr
Match: XP_022149351.1 (40S ribosomal protein S16-like [Momordica charantia])

HSP 1 Score: 290.4 bits (742), Expect = 3.3e-75
Identity = 143/144 (99.31%), Postives = 144/144 (100.00%), Query Frame = 0 

Query: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60
           MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIEL+EPEILRFKAYEPILLLGRHR
Sbjct: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELIEPEILRFKAYEPILLLGRHR 60

Query: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120
           FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA
Sbjct: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120

Query: 121 DPRRCEPKKFGGRGARARFQKSYR 145
           DPRRCEPKKFGGRGARARFQKSYR
Sbjct: 121 DPRRCEPKKFGGRGARARFQKSYR 144

[Close]
BLAST of Carg22072 vs. NCBI nr
Match: XP_022989000.1 (40S ribosomal protein S16-like [Cucurbita maxima])

HSP 1 Score: 289.7 bits (740), Expect = 5.6e-75
Identity = 143/144 (99.31%), Postives = 144/144 (100.00%), Query Frame = 0 

Query: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60
           MA+PIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR
Sbjct: 1   MASPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60

Query: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120
           FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA
Sbjct: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120

Query: 121 DPRRCEPKKFGGRGARARFQKSYR 145
           DPRRCEPKKFGGRGARARFQKSYR
Sbjct: 121 DPRRCEPKKFGGRGARARFQKSYR 144

[Close]
BLAST of Carg22072 vs. NCBI nr
Match: XP_012066736.1 (40S ribosomal protein S16 [Jatropha curcas] >XP_012066737.1 40S ribosomal protein S16 [Jatropha curcas] >KDP42492.1 hypothetical protein JCGZ_00289 [Jatropha curcas] >KDP42493.1 hypothetical protein JCGZ_00290 [Jatropha curcas])

HSP 1 Score: 287.7 bits (735), Expect = 2.1e-74
Identity = 142/143 (99.30%), Postives = 143/143 (100.00%), Query Frame = 0 

Query: 2   AAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF 61
           AAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF
Sbjct: 3   AAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF 62

Query: 62  SGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD 121
           +GVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD
Sbjct: 63  AGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD 122

Query: 122 PRRCEPKKFGGRGARARFQKSYR 145
           PRRCEPKKFGGRGARARFQKSYR
Sbjct: 123 PRRCEPKKFGGRGARARFQKSYR 145

[Close]
BLAST of Carg22072 vs. NCBI nr
Match: XP_021624890.1 (40S ribosomal protein S16-like [Manihot esculenta] >OAY39241.1 hypothetical protein MANES_10G078700 [Manihot esculenta])

HSP 1 Score: 287.7 bits (735), Expect = 2.1e-74
Identity = 142/143 (99.30%), Postives = 143/143 (100.00%), Query Frame = 0 

Query: 2   AAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF 61
           AAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF
Sbjct: 5   AAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF 64

Query: 62  SGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD 121
           +GVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD
Sbjct: 65  AGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD 124

Query: 122 PRRCEPKKFGGRGARARFQKSYR 145
           PRRCEPKKFGGRGARARFQKSYR
Sbjct: 125 PRRCEPKKFGGRGARARFQKSYR 147

[Close]
BLAST of Carg22072 vs. TAIR10
Match: AT2G09990.1 (Ribosomal protein S5 domain 2-like superfamily protein)

HSP 1 Score: 260.4 bits (664), Expect = 6.6e-70
Identity = 124/139 (89.21%), Postives = 135/139 (97.12%), Query Frame = 0 

Query: 6   ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFSGVD 65
           ESVQCFGRKKTAVAVT+CKRG GLIK+NGCPIEL +PEILRFK +EPILLLG+HRF+GV+
Sbjct: 8   ESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPILLLGKHRFAGVN 67

Query: 66  MRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 125
           MRIRV GGGHTSQ+YAIRQSIAKALVA+YQKYVDEQSKKEIKDILVRYDRTLLVADPRRC
Sbjct: 68  MRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 127

Query: 126 EPKKFGGRGARARFQKSYR 145
           EPKKFGGRGAR+R+QKSYR
Sbjct: 128 EPKKFGGRGARSRYQKSYR 146

[Close]
BLAST of Carg22072 vs. TAIR10
Match: AT5G18380.1 (Ribosomal protein S5 domain 2-like superfamily protein)

HSP 1 Score: 260.0 bits (663), Expect = 8.7e-70
Identity = 123/139 (88.49%), Postives = 135/139 (97.12%), Query Frame = 0 

Query: 6   ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFSGVD 65
           ESVQCFGRKKTAVAVT+CKRG GLIK+NGCPIEL +PEILRFK +EP+LLLG+HRF+GV+
Sbjct: 8   ESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPVLLLGKHRFAGVN 67

Query: 66  MRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 125
           MRIRV GGGHTSQ+YAIRQSIAKALVA+YQKYVDEQSKKEIKDILVRYDRTLLVADPRRC
Sbjct: 68  MRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 127

Query: 126 EPKKFGGRGARARFQKSYR 145
           EPKKFGGRGAR+R+QKSYR
Sbjct: 128 EPKKFGGRGARSRYQKSYR 146

[Close]
BLAST of Carg22072 vs. TAIR10
Match: AT3G04230.1 (Ribosomal protein S5 domain 2-like superfamily protein)

HSP 1 Score: 246.9 bits (629), Expect = 7.6e-66
Identity = 118/139 (84.89%), Postives = 130/139 (93.53%), Query Frame = 0 

Query: 6   ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFSGVD 65
           ESVQCFGRKKTA AVTYCKRG G+IK+NG PIEL +PEILRFK +EP+LLLG+HRF+GVD
Sbjct: 8   ESVQCFGRKKTATAVTYCKRGSGMIKLNGSPIELYQPEILRFKIFEPVLLLGKHRFAGVD 67

Query: 66  MRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 125
           MRIR  GGG+TS++YAIRQSIAKALVA+YQKYVDEQSKKEIKDIL+RYDRTLLVADPRRC
Sbjct: 68  MRIRATGGGNTSRVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILMRYDRTLLVADPRRC 127

Query: 126 EPKKFGGRGARARFQKSYR 145
           E KKFGG GARARFQKSYR
Sbjct: 128 ESKKFGGPGARARFQKSYR 146

[Close]
BLAST of Carg22072 vs. Swiss-Prot
Match: sp|P46293|RS16_GOSHI (40S ribosomal protein S16 OS=Gossypium hirsutum OX=3635 GN=RPS16 PE=2 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 5.2e-72
Identity = 135/140 (96.43%), Postives = 137/140 (97.86%), Query Frame = 0 

Query: 5   IESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFSGV 64
           IESVQCFGRKKTAVAVT+CKRGRGLIKINGCPIELVEPEILRFKA EPILLLGR RF+GV
Sbjct: 6   IESVQCFGRKKTAVAVTHCKRGRGLIKINGCPIELVEPEILRFKAVEPILLLGRQRFTGV 65

Query: 65  DMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRR 124
           DMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILV YDRTLLVADPRR
Sbjct: 66  DMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVGYDRTLLVADPRR 125

Query: 125 CEPKKFGGRGARARFQKSYR 145
           CEPKKFGGRGARARFQKSYR
Sbjct: 126 CEPKKFGGRGARARFQKSYR 145

[Close]
BLAST of Carg22072 vs. Swiss-Prot
Match: sp|Q9SK22|RS161_ARATH (40S ribosomal protein S16-1 OS=Arabidopsis thaliana OX=3702 GN=RPS16A PE=2 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 1.2e-68
Identity = 124/139 (89.21%), Postives = 135/139 (97.12%), Query Frame = 0 

Query: 6   ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFSGVD 65
           ESVQCFGRKKTAVAVT+CKRG GLIK+NGCPIEL +PEILRFK +EPILLLG+HRF+GV+
Sbjct: 8   ESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPILLLGKHRFAGVN 67

Query: 66  MRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 125
           MRIRV GGGHTSQ+YAIRQSIAKALVA+YQKYVDEQSKKEIKDILVRYDRTLLVADPRRC
Sbjct: 68  MRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 127

Query: 126 EPKKFGGRGARARFQKSYR 145
           EPKKFGGRGAR+R+QKSYR
Sbjct: 128 EPKKFGGRGARSRYQKSYR 146

[Close]
BLAST of Carg22072 vs. Swiss-Prot
Match: sp|O22647|RS16_FRIAG (40S ribosomal protein S16 OS=Fritillaria agrestis OX=64177 GN=RPS16 PE=2 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 1.2e-68
Identity = 128/145 (88.28%), Postives = 139/145 (95.86%), Query Frame = 0 

Query: 1   MAAP-IESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRH 60
           MA P  ESVQCFGRKKTAVAVT+CKRGRGLIK+NG PIELV+PEILR+KA+EPILLLGRH
Sbjct: 1   MATPATESVQCFGRKKTAVAVTHCKRGRGLIKVNGSPIELVKPEILRYKAFEPILLLGRH 60

Query: 61  RFSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLV 120
           RF GVDMRIRV+GGG TSQIYAIRQSIAKALVA+YQKYVDEQ+KKE+KDIL+RYDRTLLV
Sbjct: 61  RFVGVDMRIRVRGGGKTSQIYAIRQSIAKALVAYYQKYVDEQAKKEVKDILMRYDRTLLV 120

Query: 121 ADPRRCEPKKFGGRGARARFQKSYR 145
           ADPRRCEPKKFGGRGAR+RFQKSYR
Sbjct: 121 ADPRRCEPKKFGGRGARSRFQKSYR 145

[Close]
BLAST of Carg22072 vs. Swiss-Prot
Match: sp|Q42340|RS163_ARATH (40S ribosomal protein S16-3 OS=Arabidopsis thaliana OX=3702 GN=RPS16C PE=2 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 1.6e-68
Identity = 123/139 (88.49%), Postives = 135/139 (97.12%), Query Frame = 0 

Query: 6   ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFSGVD 65
           ESVQCFGRKKTAVAVT+CKRG GLIK+NGCPIEL +PEILRFK +EP+LLLG+HRF+GV+
Sbjct: 8   ESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPVLLLGKHRFAGVN 67

Query: 66  MRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 125
           MRIRV GGGHTSQ+YAIRQSIAKALVA+YQKYVDEQSKKEIKDILVRYDRTLLVADPRRC
Sbjct: 68  MRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 127

Query: 126 EPKKFGGRGARARFQKSYR 145
           EPKKFGGRGAR+R+QKSYR
Sbjct: 128 EPKKFGGRGARSRYQKSYR 146

[Close]
BLAST of Carg22072 vs. Swiss-Prot
Match: sp|Q9XEK7|RS16_TORRU (40S ribosomal protein S16 OS=Tortula ruralis OX=38588 GN=RPS16 PE=2 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 9.5e-66
Identity = 122/142 (85.92%), Postives = 137/142 (96.48%), Query Frame = 0 

Query: 3   APIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFS 62
           A +ESVQCFGRKKTAVAVTYC+RGRGLI++   PIELVEPEILR+KA+EP+LLLGR +F+
Sbjct: 2   AAVESVQCFGRKKTAVAVTYCRRGRGLIRLT-VPIELVEPEILRYKAFEPVLLLGRSKFA 61

Query: 63  GVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADP 122
           GVDMRIRVKGGG+TSQIYAIRQSIAKALVA++QKYVDEQSKKEIKD+L+RYDRTLLVADP
Sbjct: 62  GVDMRIRVKGGGNTSQIYAIRQSIAKALVAYFQKYVDEQSKKEIKDVLLRYDRTLLVADP 121

Query: 123 RRCEPKKFGGRGARARFQKSYR 145
           RRCEPKKFGGRGAR+RFQKSYR
Sbjct: 122 RRCEPKKFGGRGARSRFQKSYR 142

[Close]
BLAST of Carg22072 vs. TrEMBL
Match: tr|A0A0A0L6F6|A0A0A0L6F6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G202730 PE=3 SV=1)

HSP 1 Score: 290.8 bits (743), Expect = 1.7e-75
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0 

Query: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60
           MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR
Sbjct: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60

Query: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120
           FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA
Sbjct: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120

Query: 121 DPRRCEPKKFGGRGARARFQKSYR 145
           DPRRCEPKKFGGRGARARFQKSYR
Sbjct: 121 DPRRCEPKKFGGRGARARFQKSYR 144

[Close]
BLAST of Carg22072 vs. TrEMBL
Match: tr|A0A1S3C210|A0A1S3C210_CUCME (40S ribosomal protein S16 OS=Cucumis melo OX=3656 GN=LOC103496134 PE=3 SV=1)

HSP 1 Score: 290.8 bits (743), Expect = 1.7e-75
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0 

Query: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60
           MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR
Sbjct: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60

Query: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120
           FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA
Sbjct: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120

Query: 121 DPRRCEPKKFGGRGARARFQKSYR 145
           DPRRCEPKKFGGRGARARFQKSYR
Sbjct: 121 DPRRCEPKKFGGRGARARFQKSYR 144

[Close]
BLAST of Carg22072 vs. TrEMBL
Match: tr|A0A067L229|A0A067L229_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_00289 PE=3 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 1.4e-74
Identity = 142/143 (99.30%), Postives = 143/143 (100.00%), Query Frame = 0 

Query: 2   AAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF 61
           AAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF
Sbjct: 3   AAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF 62

Query: 62  SGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD 121
           +GVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD
Sbjct: 63  AGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD 122

Query: 122 PRRCEPKKFGGRGARARFQKSYR 145
           PRRCEPKKFGGRGARARFQKSYR
Sbjct: 123 PRRCEPKKFGGRGARARFQKSYR 145

[Close]
BLAST of Carg22072 vs. TrEMBL
Match: tr|I3NMP6|I3NMP6_HEVBR (40S ribosomal protein S16A OS=Hevea brasiliensis OX=3981 GN=RPS16A PE=2 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 1.4e-74
Identity = 142/143 (99.30%), Postives = 143/143 (100.00%), Query Frame = 0 

Query: 2   AAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF 61
           AAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF
Sbjct: 5   AAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF 64

Query: 62  SGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD 121
           +GVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD
Sbjct: 65  AGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD 124

Query: 122 PRRCEPKKFGGRGARARFQKSYR 145
           PRRCEPKKFGGRGARARFQKSYR
Sbjct: 125 PRRCEPKKFGGRGARARFQKSYR 147

[Close]
BLAST of Carg22072 vs. TrEMBL
Match: tr|A0A2C9V586|A0A2C9V586_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_10G109900 PE=3 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 1.4e-74
Identity = 142/143 (99.30%), Postives = 143/143 (100.00%), Query Frame = 0 

Query: 2   AAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF 61
           AAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF
Sbjct: 5   AAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF 64

Query: 62  SGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD 121
           +GVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD
Sbjct: 65  AGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD 124

Query: 122 PRRCEPKKFGGRGARARFQKSYR 145
           PRRCEPKKFGGRGARARFQKSYR
Sbjct: 125 PRRCEPKKFGGRGARARFQKSYR 147

The following BLAST results are available for this feature:
BLAST of Carg22072 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004136973.12.5e-75100.00PREDICTED: 40S ribosomal protein S16 [Cucumis sativus] >XP_004140706.1 PREDICTED... [more]
XP_022149351.13.3e-7599.3140S ribosomal protein S16-like [Momordica charantia][more]
XP_022989000.15.6e-7599.3140S ribosomal protein S16-like [Cucurbita maxima][more]
XP_012066736.12.1e-7499.3040S ribosomal protein S16 [Jatropha curcas] >XP_012066737.1 40S ribosomal protei... [more]
XP_021624890.12.1e-7499.3040S ribosomal protein S16-like [Manihot esculenta] >OAY39241.1 hypothetical prot... [more]
BLAST of Carg22072 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G09990.16.6e-7089.21Ribosomal protein S5 domain 2-like superfamily protein[more]
AT5G18380.18.7e-7088.49Ribosomal protein S5 domain 2-like superfamily protein[more]
AT3G04230.17.6e-6684.89Ribosomal protein S5 domain 2-like superfamily protein[more]
BLAST of Carg22072 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|P46293|RS16_GOSHI5.2e-7296.4340S ribosomal protein S16 OS=Gossypium hirsutum OX=3635 GN=RPS16 PE=2 SV=1[more]
sp|Q9SK22|RS161_ARATH1.2e-6889.2140S ribosomal protein S16-1 OS=Arabidopsis thaliana OX=3702 GN=RPS16A PE=2 SV=1[more]
sp|O22647|RS16_FRIAG1.2e-6888.2840S ribosomal protein S16 OS=Fritillaria agrestis OX=64177 GN=RPS16 PE=2 SV=1[more]
sp|Q42340|RS163_ARATH1.6e-6888.4940S ribosomal protein S16-3 OS=Arabidopsis thaliana OX=3702 GN=RPS16C PE=2 SV=1[more]
sp|Q9XEK7|RS16_TORRU9.5e-6685.9240S ribosomal protein S16 OS=Tortula ruralis OX=38588 GN=RPS16 PE=2 SV=1[more]
BLAST of Carg22072 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L6F6|A0A0A0L6F6_CUCSA1.7e-75100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G202730 PE=3 SV=1[more]
tr|A0A1S3C210|A0A1S3C210_CUCME1.7e-75100.0040S ribosomal protein S16 OS=Cucumis melo OX=3656 GN=LOC103496134 PE=3 SV=1[more]
tr|A0A067L229|A0A067L229_JATCU1.4e-7499.30Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_00289 PE=3 SV=1[more]
tr|I3NMP6|I3NMP6_HEVBR1.4e-7499.3040S ribosomal protein S16A OS=Hevea brasiliensis OX=3981 GN=RPS16A PE=2 SV=1[more]
tr|A0A2C9V586|A0A2C9V586_MANES1.4e-7499.30Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_10G109900 PE=3 SV=... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR020568Ribosomal_S5_D2-typ_fold
IPR020574Ribosomal_S9_CS
IPR000754Ribosomal_S9
IPR014721Ribosomal_S5_D2-typ_fold_subgr
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg22072-RACarg22072-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014721Ribosomal protein S5 domain 2-type fold, subgroupGENE3DG3DSA:3.30.230.10coord: 1..144
e-value: 2.5E-70
score: 237.0
IPR000754Ribosomal protein S9PFAMPF00380Ribosomal_S9coord: 12..144
e-value: 9.7E-32
score: 110.0
IPR000754Ribosomal protein S9PANTHERPTHR21569RIBOSOMAL PROTEIN S9coord: 7..144
NoneNo IPR availablePANTHERPTHR21569:SF7SUBFAMILY NOT NAMEDcoord: 7..144
IPR020574Ribosomal protein S9, conserved sitePROSITEPS00360RIBOSOMAL_S9coord: 72..90
IPR020568Ribosomal protein S5 domain 2-type foldSUPERFAMILYSSF54211Ribosomal protein S5 domain 2-likecoord: 7..144

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg22072Cla013082Watermelon (97103) v1carwmB0197
Carg22072Cla016020Watermelon (97103) v1carwmB0198
Carg22072Csa3G202730Cucumber (Chinese Long) v2carcuB0232
Carg22072Csa7G073560Cucumber (Chinese Long) v2carcuB0233
Carg22072MELO3C018459Melon (DHL92) v3.5.1carmeB0213
Carg22072MELO3C019524Melon (DHL92) v3.5.1carmeB0215
Carg22072ClCG02G006030Watermelon (Charleston Gray)carwcgB0203
Carg22072ClCG05G010150Watermelon (Charleston Gray)carwcgB0204
Carg22072CSPI07G07540Wild cucumber (PI 183967)carcpiB0239
Carg22072Cucsa.219770Cucumber (Gy14) v1carcgyB0251
Carg22072Cucsa.244500Cucumber (Gy14) v1carcgyB0253
Carg22072CmaCh11G017420Cucurbita maxima (Rimu)carcmaB0287
Carg22072CmaCh19G005990Cucurbita maxima (Rimu)carcmaB0288
Carg22072CmoCh11G013730Cucurbita moschata (Rifu)carcmoB0292
Carg22072CmoCh19G006170Cucurbita moschata (Rifu)carcmoB0293
Carg22072Lsi03G005020Bottle gourd (USVL1VR-Ls)carlsiB187
Carg22072Cp4.1LG15g04770Cucurbita pepo (Zucchini)carcpeB0295
Carg22072Cp4.1LG04g07910Cucurbita pepo (Zucchini)carcpeB0296
Carg22072CsGy7G007110Cucumber (Gy14) v2carcgybB0222
Carg22072CsGy3G018170Cucumber (Gy14) v2carcgybB0221
Carg22072MELO3C018459.2Melon (DHL92) v3.6.1carmedB0218
Carg22072MELO3C019524.2Melon (DHL92) v3.6.1carmedB0220
Carg22072CsaV3_7G008490Cucumber (Chinese Long) v3carcucB0237
Carg22072CsaV3_3G018380Cucumber (Chinese Long) v3carcucB0236
Carg22072Cla97C02G033000Watermelon (97103) v2carwmbB0212
Carg22072Cla97C05G092540Watermelon (97103) v2carwmbB0213
Carg22072Bhi01G001267Wax gourdcarwgoB0258
Carg22072Bhi05G000929Wax gourdcarwgoB0259
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg22072Carg08151Silver-seed gourdcarcarB244
Carg22072Carg26404Silver-seed gourdcarcarB246
The following block(s) are covering this gene:
GeneOrganismBlock
Carg22072Bottle gourd (USVL1VR-Ls)carlsiB186
Carg22072Watermelon (97103) v2carwmbB0211