Cp4.1LG14g04260 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG14g04260
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	40S ribosomal protein S16
Location	Cp4.1LG14 : 1700281 .. 1700715 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGCTTCGATCGAATCGGTGCAGTGTTTCGGACGCAAGAAGACGGCAGTAGCCGTTACCTACTGCAAGCGCGGCAGAGGTTTGATCAAGATCAATGGCTGTCCAATCGAACTGGTTGAGCCAGAGATCTTGCGCTTTAAGGCCTACGAGCCTATCCTCCTCCTTGGACGTCACCGTTTCTCTGGTGTCGATATGCGCATCAGAGTGAAGGGTGGAGGTCACACCTCGCAGATCTACGCCATCCGACAGAGCATTGCCAAGGCTCTTGTTGCGTTCTACCAGAAATACGTGGACGAGCAGAGCAAAAAGGAGATTAAAGACATTCTGGTCAGGTATGATAGGACTTTGCTTGTTGCCGATCCTAGGCGCTGTGAGCCCAAGAAGTTTGGTGGTCGTGGTGCTCGGGCTAGGTTCCAGAAATCATATCGTTGA

mRNA sequence

ATGGCGGCTTCGATCGAATCGGTGCAGTGTTTCGGACGCAAGAAGACGGCAGTAGCCGTTACCTACTGCAAGCGCGGCAGAGGTTTGATCAAGATCAATGGCTGTCCAATCGAACTGGTTGAGCCAGAGATCTTGCGCTTTAAGGCCTACGAGCCTATCCTCCTCCTTGGACGTCACCGTTTCTCTGGTGTCGATATGCGCATCAGAGTGAAGGGTGGAGGTCACACCTCGCAGATCTACGCCATCCGACAGAGCATTGCCAAGGCTCTTGTTGCGTTCTACCAGAAATACGTGGACGAGCAGAGCAAAAAGGAGATTAAAGACATTCTGGTCAGGTATGATAGGACTTTGCTTGTTGCCGATCCTAGGCGCTGTGAGCCCAAGAAGTTTGGTGGTCGTGGTGCTCGGGCTAGGTTCCAGAAATCATATCGTTGA

Coding sequence (CDS)

ATGGCGGCTTCGATCGAATCGGTGCAGTGTTTCGGACGCAAGAAGACGGCAGTAGCCGTTACCTACTGCAAGCGCGGCAGAGGTTTGATCAAGATCAATGGCTGTCCAATCGAACTGGTTGAGCCAGAGATCTTGCGCTTTAAGGCCTACGAGCCTATCCTCCTCCTTGGACGTCACCGTTTCTCTGGTGTCGATATGCGCATCAGAGTGAAGGGTGGAGGTCACACCTCGCAGATCTACGCCATCCGACAGAGCATTGCCAAGGCTCTTGTTGCGTTCTACCAGAAATACGTGGACGAGCAGAGCAAAAAGGAGATTAAAGACATTCTGGTCAGGTATGATAGGACTTTGCTTGTTGCCGATCCTAGGCGCTGTGAGCCCAAGAAGTTTGGTGGTCGTGGTGCTCGGGCTAGGTTCCAGAAATCATATCGTTGA

Protein sequence

MAASIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR

Homology

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BLAST of Cp4.1LG14g04260 vs. Swiss-Prot
Match: RS16_GOSHI (40S ribosomal protein S16 OS=Gossypium hirsutum GN=RPS16 PE=2 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 5.1e-72
Identity = 135/141 (95.74%), Postives = 138/141 (97.87%), Query Frame = 1


Query: 4   SIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFSG 63
           +IESVQCFGRKKTAVAVT+CKRGRGLIKINGCPIELVEPEILRFKA EPILLLGR RF+G
Sbjct: 5   AIESVQCFGRKKTAVAVTHCKRGRGLIKINGCPIELVEPEILRFKAVEPILLLGRQRFTG 64

Query: 64  VDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPR 123
           VDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILV YDRTLLVADPR
Sbjct: 65  VDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVGYDRTLLVADPR 124

Query: 124 RCEPKKFGGRGARARFQKSYR 145
           RCEPKKFGGRGARARFQKSYR
Sbjct: 125 RCEPKKFGGRGARARFQKSYR 145

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BLAST of Cp4.1LG14g04260 vs. Swiss-Prot
Match: RS161_ARATH (40S ribosomal protein S16-1 OS=Arabidopsis thaliana GN=RPS16A PE=2 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 1.5e-68
Identity = 124/139 (89.21%), Postives = 135/139 (97.12%), Query Frame = 1


Query: 6   ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFSGVD 65
           ESVQCFGRKKTAVAVT+CKRG GLIK+NGCPIEL +PEILRFK +EPILLLG+HRF+GV+
Sbjct: 8   ESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPILLLGKHRFAGVN 67

Query: 66  MRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 125
           MRIRV GGGHTSQ+YAIRQSIAKALVA+YQKYVDEQSKKEIKDILVRYDRTLLVADPRRC
Sbjct: 68  MRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 127

Query: 126 EPKKFGGRGARARFQKSYR 145
           EPKKFGGRGAR+R+QKSYR
Sbjct: 128 EPKKFGGRGARSRYQKSYR 146

[Close]

BLAST of Cp4.1LG14g04260 vs. Swiss-Prot
Match: RS163_ARATH (40S ribosomal protein S16-3 OS=Arabidopsis thaliana GN=RPS16C PE=2 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 2.0e-68
Identity = 123/139 (88.49%), Postives = 135/139 (97.12%), Query Frame = 1


Query: 6   ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFSGVD 65
           ESVQCFGRKKTAVAVT+CKRG GLIK+NGCPIEL +PEILRFK +EP+LLLG+HRF+GV+
Sbjct: 8   ESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPVLLLGKHRFAGVN 67

Query: 66  MRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 125
           MRIRV GGGHTSQ+YAIRQSIAKALVA+YQKYVDEQSKKEIKDILVRYDRTLLVADPRRC
Sbjct: 68  MRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 127

Query: 126 EPKKFGGRGARARFQKSYR 145
           EPKKFGGRGAR+R+QKSYR
Sbjct: 128 EPKKFGGRGARSRYQKSYR 146

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BLAST of Cp4.1LG14g04260 vs. Swiss-Prot
Match: RS16_FRIAG (40S ribosomal protein S16 OS=Fritillaria agrestis GN=RPS16 PE=2 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 2.6e-68
Identity = 125/139 (89.93%), Postives = 136/139 (97.84%), Query Frame = 1


Query: 6   ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFSGVD 65
           ESVQCFGRKKTAVAVT+CKRGRGLIK+NG PIELV+PEILR+KA+EPILLLGRHRF GVD
Sbjct: 7   ESVQCFGRKKTAVAVTHCKRGRGLIKVNGSPIELVKPEILRYKAFEPILLLGRHRFVGVD 66

Query: 66  MRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 125
           MRIRV+GGG TSQIYAIRQSIAKALVA+YQKYVDEQ+KKE+KDIL+RYDRTLLVADPRRC
Sbjct: 67  MRIRVRGGGKTSQIYAIRQSIAKALVAYYQKYVDEQAKKEVKDILMRYDRTLLVADPRRC 126

Query: 126 EPKKFGGRGARARFQKSYR 145
           EPKKFGGRGAR+RFQKSYR
Sbjct: 127 EPKKFGGRGARSRFQKSYR 145

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BLAST of Cp4.1LG14g04260 vs. Swiss-Prot
Match: RS16_TORRU (40S ribosomal protein S16 OS=Tortula ruralis GN=RPS16 PE=2 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 7.1e-66
Identity = 122/142 (85.92%), Postives = 138/142 (97.18%), Query Frame = 1


Query: 3   ASIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFS 62
           A++ESVQCFGRKKTAVAVTYC+RGRGLI++   PIELVEPEILR+KA+EP+LLLGR +F+
Sbjct: 2   AAVESVQCFGRKKTAVAVTYCRRGRGLIRLT-VPIELVEPEILRYKAFEPVLLLGRSKFA 61

Query: 63  GVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADP 122
           GVDMRIRVKGGG+TSQIYAIRQSIAKALVA++QKYVDEQSKKEIKD+L+RYDRTLLVADP
Sbjct: 62  GVDMRIRVKGGGNTSQIYAIRQSIAKALVAYFQKYVDEQSKKEIKDVLLRYDRTLLVADP 121

Query: 123 RRCEPKKFGGRGARARFQKSYR 145
           RRCEPKKFGGRGAR+RFQKSYR
Sbjct: 122 RRCEPKKFGGRGARSRFQKSYR 142

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BLAST of Cp4.1LG14g04260 vs. TrEMBL
Match: A0A0A0L6F6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G202730 PE=3 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 1.0e-74
Identity = 143/144 (99.31%), Postives = 143/144 (99.31%), Query Frame = 1


Query: 1   MAASIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60
           MAA IESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR
Sbjct: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60

Query: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120
           FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA
Sbjct: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120

Query: 121 DPRRCEPKKFGGRGARARFQKSYR 145
           DPRRCEPKKFGGRGARARFQKSYR
Sbjct: 121 DPRRCEPKKFGGRGARARFQKSYR 144

[Close]

BLAST of Cp4.1LG14g04260 vs. TrEMBL
Match: I3NMP6_HEVBR (40S ribosomal protein S16A OS=Hevea brasiliensis GN=RPS16A PE=2 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 8.5e-74
Identity = 141/143 (98.60%), Postives = 142/143 (99.30%), Query Frame = 1


Query: 2   AASIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF 61
           AA IESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF
Sbjct: 5   AAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF 64

Query: 62  SGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD 121
           +GVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD
Sbjct: 65  AGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD 124

Query: 122 PRRCEPKKFGGRGARARFQKSYR 145
           PRRCEPKKFGGRGARARFQKSYR
Sbjct: 125 PRRCEPKKFGGRGARARFQKSYR 147

[Close]

BLAST of Cp4.1LG14g04260 vs. TrEMBL
Match: A0A067L229_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00289 PE=3 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 8.5e-74
Identity = 141/143 (98.60%), Postives = 142/143 (99.30%), Query Frame = 1


Query: 2   AASIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF 61
           AA IESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF
Sbjct: 3   AAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF 62

Query: 62  SGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD 121
           +GVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD
Sbjct: 63  AGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD 122

Query: 122 PRRCEPKKFGGRGARARFQKSYR 145
           PRRCEPKKFGGRGARARFQKSYR
Sbjct: 123 PRRCEPKKFGGRGARARFQKSYR 145

[Close]

BLAST of Cp4.1LG14g04260 vs. TrEMBL
Match: A0A061ETH8_THECC (Ribosomal protein S5 domain 2-like superfamily protein OS=Theobroma cacao GN=TCM_020568 PE=3 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 1.9e-73
Identity = 139/144 (96.53%), Postives = 143/144 (99.31%), Query Frame = 1


Query: 1   MAASIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60
           MAA +ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILR+KAYEPILLLGRHR
Sbjct: 1   MAAPVESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRYKAYEPILLLGRHR 60

Query: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120
           F+GVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQK+VDEQSKKEIKDILVRYDRTLLVA
Sbjct: 61  FAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKFVDEQSKKEIKDILVRYDRTLLVA 120

Query: 121 DPRRCEPKKFGGRGARARFQKSYR 145
           DPRRCEPKKFGGRGARARFQKSYR
Sbjct: 121 DPRRCEPKKFGGRGARARFQKSYR 144

[Close]

BLAST of Cp4.1LG14g04260 vs. TrEMBL
Match: G9F9P5_HEVBR (Putative ribosomal protein S9 (Fragment) OS=Hevea brasiliensis PE=2 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 1.9e-73
Identity = 140/143 (97.90%), Postives = 142/143 (99.30%), Query Frame = 1


Query: 2   AASIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF 61
           +A IESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF
Sbjct: 1   SAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF 60

Query: 62  SGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD 121
           +GVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD
Sbjct: 61  AGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD 120

Query: 122 PRRCEPKKFGGRGARARFQKSYR 145
           PRRCEPKKFGGRGARARFQKSYR
Sbjct: 121 PRRCEPKKFGGRGARARFQKSYR 143

[Close]

BLAST of Cp4.1LG14g04260 vs. TAIR10
Match: AT2G09990.1 (AT2G09990.1 Ribosomal protein S5 domain 2-like superfamily protein)

HSP 1 Score: 260.0 bits (663), Expect = 8.7e-70
Identity = 124/139 (89.21%), Postives = 135/139 (97.12%), Query Frame = 1


Query: 6   ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFSGVD 65
           ESVQCFGRKKTAVAVT+CKRG GLIK+NGCPIEL +PEILRFK +EPILLLG+HRF+GV+
Sbjct: 8   ESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPILLLGKHRFAGVN 67

Query: 66  MRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 125
           MRIRV GGGHTSQ+YAIRQSIAKALVA+YQKYVDEQSKKEIKDILVRYDRTLLVADPRRC
Sbjct: 68  MRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 127

Query: 126 EPKKFGGRGARARFQKSYR 145
           EPKKFGGRGAR+R+QKSYR
Sbjct: 128 EPKKFGGRGARSRYQKSYR 146

[Close]

BLAST of Cp4.1LG14g04260 vs. TAIR10
Match: AT5G18380.1 (AT5G18380.1 Ribosomal protein S5 domain 2-like superfamily protein)

HSP 1 Score: 259.6 bits (662), Expect = 1.1e-69
Identity = 123/139 (88.49%), Postives = 135/139 (97.12%), Query Frame = 1


Query: 6   ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFSGVD 65
           ESVQCFGRKKTAVAVT+CKRG GLIK+NGCPIEL +PEILRFK +EP+LLLG+HRF+GV+
Sbjct: 8   ESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPVLLLGKHRFAGVN 67

Query: 66  MRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 125
           MRIRV GGGHTSQ+YAIRQSIAKALVA+YQKYVDEQSKKEIKDILVRYDRTLLVADPRRC
Sbjct: 68  MRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 127

Query: 126 EPKKFGGRGARARFQKSYR 145
           EPKKFGGRGAR+R+QKSYR
Sbjct: 128 EPKKFGGRGARSRYQKSYR 146

[Close]

BLAST of Cp4.1LG14g04260 vs. TAIR10
Match: AT3G04230.1 (AT3G04230.1 Ribosomal protein S5 domain 2-like superfamily protein)

HSP 1 Score: 246.5 bits (628), Expect = 9.9e-66
Identity = 118/139 (84.89%), Postives = 130/139 (93.53%), Query Frame = 1


Query: 6   ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFSGVD 65
           ESVQCFGRKKTA AVTYCKRG G+IK+NG PIEL +PEILRFK +EP+LLLG+HRF+GVD
Sbjct: 8   ESVQCFGRKKTATAVTYCKRGSGMIKLNGSPIELYQPEILRFKIFEPVLLLGKHRFAGVD 67

Query: 66  MRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 125
           MRIR  GGG+TS++YAIRQSIAKALVA+YQKYVDEQSKKEIKDIL+RYDRTLLVADPRRC
Sbjct: 68  MRIRATGGGNTSRVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILMRYDRTLLVADPRRC 127

Query: 126 EPKKFGGRGARARFQKSYR 145
           E KKFGG GARARFQKSYR
Sbjct: 128 ESKKFGGPGARARFQKSYR 146

[Close]

BLAST of Cp4.1LG14g04260 vs. NCBI nr
Match: gi|449438394|ref|XP_004136973.1| (PREDICTED: 40S ribosomal protein S16 [Cucumis sativus])

HSP 1 Score: 287.3 bits (734), Expect = 1.4e-74
Identity = 143/144 (99.31%), Postives = 143/144 (99.31%), Query Frame = 1


Query: 1   MAASIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60
           MAA IESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR
Sbjct: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60

Query: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120
           FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA
Sbjct: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120

Query: 121 DPRRCEPKKFGGRGARARFQKSYR 145
           DPRRCEPKKFGGRGARARFQKSYR
Sbjct: 121 DPRRCEPKKFGGRGARARFQKSYR 144

[Close]

BLAST of Cp4.1LG14g04260 vs. NCBI nr
Match: gi|802563143|ref|XP_012066736.1| (PREDICTED: 40S ribosomal protein S16 [Jatropha curcas])

HSP 1 Score: 284.3 bits (726), Expect = 1.2e-73
Identity = 141/143 (98.60%), Postives = 142/143 (99.30%), Query Frame = 1


Query: 2   AASIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF 61
           AA IESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF
Sbjct: 3   AAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF 62

Query: 62  SGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD 121
           +GVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD
Sbjct: 63  AGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD 122

Query: 122 PRRCEPKKFGGRGARARFQKSYR 145
           PRRCEPKKFGGRGARARFQKSYR
Sbjct: 123 PRRCEPKKFGGRGARARFQKSYR 145

[Close]

BLAST of Cp4.1LG14g04260 vs. NCBI nr
Match: gi|313586545|gb|ADR71283.1| (40S ribosomal protein S16A [Hevea brasiliensis])

HSP 1 Score: 284.3 bits (726), Expect = 1.2e-73
Identity = 141/143 (98.60%), Postives = 142/143 (99.30%), Query Frame = 1


Query: 2   AASIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF 61
           AA IESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF
Sbjct: 5   AAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF 64

Query: 62  SGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD 121
           +GVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD
Sbjct: 65  AGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVAD 124

Query: 122 PRRCEPKKFGGRGARARFQKSYR 145
           PRRCEPKKFGGRGARARFQKSYR
Sbjct: 125 PRRCEPKKFGGRGARARFQKSYR 147

[Close]

BLAST of Cp4.1LG14g04260 vs. NCBI nr
Match: gi|225432586|ref|XP_002281350.1| (PREDICTED: 40S ribosomal protein S16 [Vitis vinifera])

HSP 1 Score: 283.1 bits (723), Expect = 2.7e-73
Identity = 140/144 (97.22%), Postives = 142/144 (98.61%), Query Frame = 1


Query: 1   MAASIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60
           MAA IESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIEL+EPEILR KAYEPILLLGRHR
Sbjct: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELIEPEILRHKAYEPILLLGRHR 60

Query: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120
           F+GVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA
Sbjct: 61  FAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120

Query: 121 DPRRCEPKKFGGRGARARFQKSYR 145
           DPRRCEPKKFGGRGARARFQKSYR
Sbjct: 121 DPRRCEPKKFGGRGARARFQKSYR 144

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BLAST of Cp4.1LG14g04260 vs. NCBI nr
Match: gi|590657854|ref|XP_007034683.1| (Ribosomal protein S5 domain 2-like superfamily protein [Theobroma cacao])

HSP 1 Score: 283.1 bits (723), Expect = 2.7e-73
Identity = 139/144 (96.53%), Postives = 143/144 (99.31%), Query Frame = 1


Query: 1   MAASIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60
           MAA +ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILR+KAYEPILLLGRHR
Sbjct: 1   MAAPVESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRYKAYEPILLLGRHR 60

Query: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120
           F+GVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQK+VDEQSKKEIKDILVRYDRTLLVA
Sbjct: 61  FAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKFVDEQSKKEIKDILVRYDRTLLVA 120

Query: 121 DPRRCEPKKFGGRGARARFQKSYR 145
           DPRRCEPKKFGGRGARARFQKSYR
Sbjct: 121 DPRRCEPKKFGGRGARARFQKSYR 144

The following BLAST results are available for this feature:

BLAST of Cp4.1LG14g04260 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RS16_GOSHI	5.1e-72	95.74	40S ribosomal protein S16 OS=Gossypium hirsutum GN=RPS16 PE=2 SV=1	[more]
RS161_ARATH	1.5e-68	89.21	40S ribosomal protein S16-1 OS=Arabidopsis thaliana GN=RPS16A PE=2 SV=1	[more]
RS163_ARATH	2.0e-68	88.49	40S ribosomal protein S16-3 OS=Arabidopsis thaliana GN=RPS16C PE=2 SV=1	[more]
RS16_FRIAG	2.6e-68	89.93	40S ribosomal protein S16 OS=Fritillaria agrestis GN=RPS16 PE=2 SV=1	[more]
RS16_TORRU	7.1e-66	85.92	40S ribosomal protein S16 OS=Tortula ruralis GN=RPS16 PE=2 SV=1	[more]

BLAST of Cp4.1LG14g04260 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L6F6_CUCSA	1.0e-74	99.31	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G202730 PE=3 SV=1	[more]
I3NMP6_HEVBR	8.5e-74	98.60	40S ribosomal protein S16A OS=Hevea brasiliensis GN=RPS16A PE=2 SV=1	[more]
A0A067L229_JATCU	8.5e-74	98.60	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00289 PE=3 SV=1	[more]
A0A061ETH8_THECC	1.9e-73	96.53	Ribosomal protein S5 domain 2-like superfamily protein OS=Theobroma cacao GN=TCM...	[more]
G9F9P5_HEVBR	1.9e-73	97.90	Putative ribosomal protein S9 (Fragment) OS=Hevea brasiliensis PE=2 SV=1	[more]

BLAST of Cp4.1LG14g04260 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G09990.1	8.7e-70	89.21	Ribosomal protein S5 domain 2-like superfamily protein	[more]
AT5G18380.1	1.1e-69	88.49	Ribosomal protein S5 domain 2-like superfamily protein	[more]
AT3G04230.1	9.9e-66	84.89	Ribosomal protein S5 domain 2-like superfamily protein	[more]

BLAST of Cp4.1LG14g04260 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449438394\|ref\|XP_004136973.1\|	1.4e-74	99.31	PREDICTED: 40S ribosomal protein S16 [Cucumis sativus]	[more]
gi\|802563143\|ref\|XP_012066736.1\|	1.2e-73	98.60	PREDICTED: 40S ribosomal protein S16 [Jatropha curcas]	[more]
gi\|313586545\|gb\|ADR71283.1\|	1.2e-73	98.60	40S ribosomal protein S16A [Hevea brasiliensis]	[more]
gi\|225432586\|ref\|XP_002281350.1\|	2.7e-73	97.22	PREDICTED: 40S ribosomal protein S16 [Vitis vinifera]	[more]
gi\|590657854\|ref\|XP_007034683.1\|	2.7e-73	96.53	Ribosomal protein S5 domain 2-like superfamily protein [Theobroma cacao]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
biological_process	GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
cellular_component	GO:0005840	ribosome
cellular_component	GO:0022627	cytosolic small ribosomal subunit
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG14g04260.1	Cp4.1LG14g04260.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG14g04260	Cucsa.219770	Cucumber (Gy14) v1	cgycpeB0593
Cp4.1LG14g04260	Cucsa.244500	Cucumber (Gy14) v1	cgycpeB0652
Cp4.1LG14g04260	CmaCh11G017420	Cucurbita maxima (Rimu)	cmacpeB114
Cp4.1LG14g04260	CmaCh16G003520	Cucurbita maxima (Rimu)	cmacpeB344
Cp4.1LG14g04260	CmoCh16G003760	Cucurbita moschata (Rifu)	cmocpeB307
Cp4.1LG14g04260	CmoCh11G013730	Cucurbita moschata (Rifu)	cmocpeB092
Cp4.1LG14g04260	Cla013082	Watermelon (97103) v1	cpewmB228
Cp4.1LG14g04260	Cla016020	Watermelon (97103) v1	cpewmB233
Cp4.1LG14g04260	Csa3G202730	Cucumber (Chinese Long) v2	cpecuB205
Cp4.1LG14g04260	Csa7G073560	Cucumber (Chinese Long) v2	cpecuB230
Cp4.1LG14g04260	Csa3G215620	Cucumber (Chinese Long) v2	cpecuB217
Cp4.1LG14g04260	MELO3C019524	Melon (DHL92) v3.5.1	cpemeB192
Cp4.1LG14g04260	MELO3C018459	Melon (DHL92) v3.5.1	cpemeB182
Cp4.1LG14g04260	ClCG02G006030	Watermelon (Charleston Gray)	cpewcgB205
Cp4.1LG14g04260	ClCG05G010150	Watermelon (Charleston Gray)	cpewcgB208
Cp4.1LG14g04260	CSPI07G07540	Wild cucumber (PI 183967)	cpecpiB233
Cp4.1LG14g04260	CSPI03G18320	Wild cucumber (PI 183967)	cpecpiB208
Cp4.1LG14g04260	Lsi03G005020	Bottle gourd (USVL1VR-Ls)	cpelsiB171
Cp4.1LG14g04260	Lsi05G002240	Bottle gourd (USVL1VR-Ls)	cpelsiB177
Cp4.1LG14g04260	MELO3C019524.2	Melon (DHL92) v3.6.1	cpemedB234
Cp4.1LG14g04260	MELO3C018459.2	Melon (DHL92) v3.6.1	cpemedB220
Cp4.1LG14g04260	CsaV3_3G018990	Cucumber (Chinese Long) v3	cpecucB0261
Cp4.1LG14g04260	CsaV3_7G008490	Cucumber (Chinese Long) v3	cpecucB0285
Cp4.1LG14g04260	CsaV3_3G018380	Cucumber (Chinese Long) v3	cpecucB0247
Cp4.1LG14g04260	Bhi05G000929	Wax gourd	cpewgoB0302
Cp4.1LG14g04260	Bhi01G001267	Wax gourd	cpewgoB0295
Cp4.1LG14g04260	CsGy7G007110	Cucumber (Gy14) v2	cgybcpeB909
Cp4.1LG14g04260	CsGy3G018170	Cucumber (Gy14) v2	cgybcpeB317
Cp4.1LG14g04260	Carg08151	Silver-seed gourd	carcpeB0523

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG14g04260	Cp4.1LG01g02420	Cucurbita pepo (Zucchini)	cpecpeB234

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG14g04260	Cucumber (Gy14) v2	cgybcpeB747
Cp4.1LG14g04260	Melon (DHL92) v3.6.1	cpemedB250
Cp4.1LG14g04260	Cucumber (Chinese Long) v3	cpecucB0283
Cp4.1LG14g04260	Wax gourd	cpewgoB0304
Cp4.1LG14g04260	Cucumber (Gy14) v1	cgycpeB0215
Cp4.1LG14g04260	Cucurbita maxima (Rimu)	cmacpeB035
Cp4.1LG14g04260	Cucurbita maxima (Rimu)	cmacpeB715
Cp4.1LG14g04260	Cucurbita moschata (Rifu)	cmocpeB668
Cp4.1LG14g04260	Cucumber (Chinese Long) v2	cpecuB229
Cp4.1LG14g04260	Melon (DHL92) v3.5.1	cpemeB200
Cp4.1LG14g04260	Melon (DHL92) v3.5.1	cpemeB208