Cucsa.241970 (gene) Cucumber (Gy14) v1

NameCucsa.241970
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionRNA-binding protein
Locationscaffold02047 : 1821824 .. 1823969 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCAAGTGATATGTTACATTTTTGATCTTCCAATTCCCCAAGGCTTCCCGGAGCAGAAAAATCCATCCCTATCACTTGGGAATTTCACCATTCCCATTCCCATTCCCCTTCTCTTCCTCAAATGTCAGCTTATTCTCTCTCAATGGCTGCTGCTGCTGCTGCTGCTTCAGTTTCTTCATCTCCACTCTACAACAAACACTTCTTCACTCAACATCCCAACCAAATTCCCTCTCATTTTTCTCCAAAACACAACCAATTGAAGCTTCTCAACCTCACATTCCATTCACCCAACTTTTACCCTCTTTCCTTCTCCTCTGTTTCTCATCTCCACTGTGCGCCTCCTGCTTTCGATGAGCTTGAAATCTCCGACCCAGAAACAGAATACGGACACATACAAGAATCGGATGGTGAAGAAGAAACCCAAGAAGAAGATGAACAAAAGGTATCGGTATCTCGTGAAGCAGGGAAGCTTTACATTGGAAATTTACCCTATGCTATGACTTCTTCCCAATTGTCTGAGGTATTTGCCGAAGCCGGTCATGTGGTTTCTGTGCAGGTTTGTGGTTGAACTTGTATTTTTTAGGGCCAATTACAACTGCTTCACCATTGTTGAGTTCTCATGTGATTTATCTTCTGCATCTTATGTTAGGTTATATACGATAAAGTTACGGATAGGAGTAGGGGATTTGCGTTTGTGACAATGGCAACTTTGGAGGAAGCTAAAGAAGCAATTCGGATGTTTGATGGCTCTGTAAATTACTTATATTCTTTCTCTTTTTCCTTTCATTTTCTTTTAGCTTAACAATTGTGGAAATTTTTGCATTCTTTCTAACTTTGGAGTTTGAAAGCAGTGGTTAGAAACTAGGGTTGGATATCCAGAGTTTGTTTTAGCTGTTAGCTTAACTTACTAGCGGTTGTTACTTTCAAATGCGTTCATAGAAGGGCAGAGTTTTTTGGAGAGTAATTTATTTATAAAGGTAGGGAAGTTATTTGAAGGTTTTGTAGAATTAGGTGATATTAGTGTTAGTGTTACACATCAGAGAGGGTGCTGATGATTCTAACACAACGGAGCATACAAATAGATTCTAAATGCCAAGTGTAATAGTTTTGGTACCATGGTACGATGTCTCTATATATGACAGACAAATTTATTGACAGTGTGTAAGATGTTCAAGATTGCTATAATGTTACTTATGGTTGCACTACTTGTCAGCAAATCGGTGGTCGAACCGTTCGGGTGAATTTCCCTGAAGTGCCAAGGGGAGGAGAAAAGGAAGTAATGGGGCCAAGGATAAGAAGCAGCTACAACAAATTTGTAGATAGTCCACACAAAATATATGCAGGGAACCTTGGTTGGGGCCTCACTTCTCAGAGTCTAAGAGACGCTTTTGAAAACCAACCGGGGATATTGAGTGCTAAGATCATCTATGATAGGGCATCTGGAAAAAGTAGAGGTTTTGGATTTGTATCTTTTGAAACTGCTGAGGATGCAGAGTCTGCTTTGGAGTCCATGAATGGAGTGGTAAGGAAGTGACAGAATTTACTGATGTGATTGATCCTTAACTACATTATTACTTTTCAACTACTTCAAAATGGGCCCATATTAACATAAACCTTGCAAACCAGAATTACATTATTTGAGAACTAGCCATGAAAAAATGTACCTGCATTTTGTATATTTAGCCCTGTGTTATAGATACAAGTCACACATTAACCTCTTCCTATGGCACATGCTTACAGGAAGTTGAAGGGCGACCTCTGCGTTTGAATATTGCTGCAGGACAGTCCCCAATTTCTCCAGCAGCATTCCCAAGGACTGAGAATACCATTGACGGCAAAGAATTGCTTACAAGTATCAGTGCGTGAAATCTGATGTTGTGAGTTGGCTTGAAAATTAAACTGAAACTGAAGGTTAAGGCAAATTCTGCAAATTGCATACCTTCAGGTCTTCCCCGCAATTCTCCCATTCCTTGCTCAACGACCAAGGAAGACTAGATTTTTTTCATTGAGTGGTGTATGTGAGTAGAGGGAAAGTGTGGATGTGTTGCCATAGGTTAACGAGTTTTTTTACGTATGGCTGGGGAATTGGACTGGATGTACTATGGAGTCTCTTTGCTGAGTTAATACTACAATATATTCATCTCGCA

mRNA sequence

CCAAGTGATATGTTACATTTTTGATCTTCCAATTCCCCAAGGCTTCCCGGAGCAGAAAAATCCATCCCTATCACTTGGGAATTTCACCATTCCCATTCCCATTCCCCTTCTCTTCCTCAAATGTCAGCTTATTCTCTCTCAATGgctgctgctgctgctgctgctTCAGTTTCTTCATCTCCACTCTACAACAAACACTTCTTCACTCAACATCCCAACCAAATTCCCTCTCATTTTTCTCCAAAACACAACCAATTGAAGCTTCTCAACCTCACATTCCATTCACCCAACTTTTACCCTCTTTCCTTCTCCTCTGTTTCTCATCTCCACTGTGCGCCTCCTGCTTTCGATGAGCTTGAAATCTCCGACCCAGAAACAGAATACGGACACATACAAGAATCGGATGGTGAAGAAGAAACCCAAGAAGAAGATGAACAAAAGGTATCGGTATCTCGTGAAGCAGGGAAGCTTTACATTGGAAATTTACCCTATGCTATGACTTCTTCCCAATTGTCTGAGGTATTTGCCGAAGCCGGTCATGTGGTTTCTGTGCAGGTTATATACGATAAAGTTACGGATAGGAGTAGGGGATTTGCGTTTGTGACAATGGCAACTTTGGAGGAAGCTAAAGAAGCAATTCGGATGTTTGATGGCTCTCAAATCGGTGGTCGAACCGTTCGGGTGAATTTCCCTGAAGTGCCAAGGGGAGGAGAAAAGGAAGTAATGGGGCCAAGGATAAGAAGCAGCTACAACAAATTTGTAGATAGTCCACACAAAATATATGCAGGGAACCTTGGTTGGGGCCTCACTTCTCAGAGTCTAAGAGACGCTTTTGAAAACCAACCGGGGATATTGAGTGCTAAGATCATCTATGATAGGGCATCTGGAAAAAGTAGAGGTTTTGGATTTGTATCTTTTGAAACTGCTGAGGATGCAGAGTCTGCTTTGGAGTCCATGAATGGAGTGGAAGTTGAAGGGCGACCTCTGCGTTTGAATATTGCTGCAGGACAGTCCCCAATTTCTCCAGCAGCATTCCCAAGGACTGAGAATACCATTGACGGCAAAGAATTGCTTACAAGTATCAGTGCGTGAAATCTGATGTTGTGAGTTGGCTTGAAAATTAAACTGAAACTGAAGGTTAAGGCAAATTCTGCAAATTGCATACCTTCAGGTCTTCCCCGCAATTCTCCCATTCCTTGCTCAACGACCAAGGAAGACTAGATTTTTTTCATTGAGTGGTGTATGTGAGTAGAGGGAAAGTGTGGATGTGTTGCCATAGGTTAACGAGTTTTTTTACGTATGGCTGGGGAATTGGACTGGATGTACTATGGAGTCTCTTTGCTGAGTTAATACTACAATATATTCATCTCGCA

Coding sequence (CDS)

ATGTCAGCTTATTCTCTCTCAATGGCTGCTGCTGCTGCTGCTGCTTCAGTTTCTTCATCTCCACTCTACAACAAACACTTCTTCACTCAACATCCCAACCAAATTCCCTCTCATTTTTCTCCAAAACACAACCAATTGAAGCTTCTCAACCTCACATTCCATTCACCCAACTTTTACCCTCTTTCCTTCTCCTCTGTTTCTCATCTCCACTGTGCGCCTCCTGCTTTCGATGAGCTTGAAATCTCCGACCCAGAAACAGAATACGGACACATACAAGAATCGGATGGTGAAGAAGAAACCCAAGAAGAAGATGAACAAAAGGTATCGGTATCTCGTGAAGCAGGGAAGCTTTACATTGGAAATTTACCCTATGCTATGACTTCTTCCCAATTGTCTGAGGTATTTGCCGAAGCCGGTCATGTGGTTTCTGTGCAGGTTATATACGATAAAGTTACGGATAGGAGTAGGGGATTTGCGTTTGTGACAATGGCAACTTTGGAGGAAGCTAAAGAAGCAATTCGGATGTTTGATGGCTCTCAAATCGGTGGTCGAACCGTTCGGGTGAATTTCCCTGAAGTGCCAAGGGGAGGAGAAAAGGAAGTAATGGGGCCAAGGATAAGAAGCAGCTACAACAAATTTGTAGATAGTCCACACAAAATATATGCAGGGAACCTTGGTTGGGGCCTCACTTCTCAGAGTCTAAGAGACGCTTTTGAAAACCAACCGGGGATATTGAGTGCTAAGATCATCTATGATAGGGCATCTGGAAAAAGTAGAGGTTTTGGATTTGTATCTTTTGAAACTGCTGAGGATGCAGAGTCTGCTTTGGAGTCCATGAATGGAGTGGAAGTTGAAGGGCGACCTCTGCGTTTGAATATTGCTGCAGGACAGTCCCCAATTTCTCCAGCAGCATTCCCAAGGACTGAGAATACCATTGACGGCAAAGAATTGCTTACAAGTATCAGTGCGTGA

Protein sequence

MSAYSLSMAAAAAAASVSSSPLYNKHFFTQHPNQIPSHFSPKHNQLKLLNLTFHSPNFYPLSFSSVSHLHCAPPAFDELEISDPETEYGHIQESDGEEETQEEDEQKVSVSREAGKLYIGNLPYAMTSSQLSEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQIGGRTVRVNFPEVPRGGEKEVMGPRIRSSYNKFVDSPHKIYAGNLGWGLTSQSLRDAFENQPGILSAKIIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAAGQSPISPAAFPRTENTIDGKELLTSISA*
BLAST of Cucsa.241970 vs. Swiss-Prot
Match: ROC5_NICSY (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 323.2 bits (827), Expect = 3.3e-87
Identity = 173/323 (53.56%), Postives = 225/323 (69.66%), Query Frame = 1

Query: 12  AAAASVSSSPLYNKHFFTQHPNQIPSHFSPKHNQLKLLNLTFHSP-------NFYPLS-- 71
           AA AS SS+ L   + FTQ P      FS  H  L   N  F+           +P+S  
Sbjct: 9   AATASTSSTSLL--YLFTQKPK-----FSVDHLSLSTYNTHFNFKINSTKLKAHFPISSL 68

Query: 72  FSSVSHLHCAPPAFDELEISDPETEYGHIQESDGEEETQEEDEQKVSVSREAGKLYIGNL 131
           + S   L       D +E+   + E      ++ EEE +E++E+  S S E G+LY+GNL
Sbjct: 69  YRSSIFLSTCASVSDGVEVVQEDDEEEVALSAEEEEEIEEKEERVESESVEGGRLYVGNL 128

Query: 132 PYAMTSSQLSEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQIG 191
           P++MTSSQLSE+FAEAG V +V+++YD+VTDRSRGFAFVTM ++EEAKEAIR+FDGSQ+G
Sbjct: 129 PFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLFDGSQVG 188

Query: 192 GRTVRVNFPEVPRGGEKEVMGPRIRSSYNKFVDSPHKIYAGNLGWGLTSQSLRDAFENQP 251
           GRTV+VNFPEVPRGGE+EVM  +IRS+Y  FVDSPHK+Y  NL W LTSQ LRDAF +QP
Sbjct: 189 GRTVKVNFPEVPRGGEREVMSAKIRSTYQGFVDSPHKLYVANLSWALTSQGLRDAFADQP 248

Query: 252 GILSAKIIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAAGQSPIS- 311
           G +SAK+IYDR+SG+SRGFGF++F +AE   SAL++MN VE+EGRPLRLN+A  ++P+S 
Sbjct: 249 GFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVELEGRPLRLNVAGQKAPVSS 308

Query: 312 -PAAFPRTENTIDGKELLTSISA 324
            P      EN  D  ELL+S+S+
Sbjct: 309 PPVVETSPENDSDNSELLSSLSS 324

BLAST of Cucsa.241970 vs. Swiss-Prot
Match: CP33_ARATH (RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana GN=CP33 PE=2 SV=1)

HSP 1 Score: 316.2 bits (809), Expect = 4.1e-85
Identity = 174/335 (51.94%), Postives = 229/335 (68.36%), Query Frame = 1

Query: 2   SAYSLSMAAAAAAASVSSSPLYNKHFFTQHPNQIPSHFSPKHNQLKLLNLTFHSPNFYPL 61
           SAY  S  A +AAA+ SS+  +N    +   +Q+   F+PK        L  + PN  PL
Sbjct: 3   SAYCSSAVAVSAAATASSAATFNPLLSSHSNSQLFYRFTPKS-----FKLVANCPN--PL 62

Query: 62  SFSSVSHLH---CAPP-----AFDELEISDPETEYGHIQESDGEEETQEEDEQKVSVSRE 121
              S    H   CA       A DE++ S  E E    +  +GEEE +EE +Q    S E
Sbjct: 63  ILHSNIRRHRFFCAAETEASSADDEIQASVEEEEEVEEEGDEGEEEVEEE-KQTTQASGE 122

Query: 122 AGKLYIGNLPYAMTSSQLSEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAI 181
            G+LY+GNLPY +TSS+LS++F EAG VV VQ++YDKVTDRSRGF FVTM ++EEAKEA+
Sbjct: 123 EGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAM 182

Query: 182 RMFDGSQIGGRTVRVNFPEVPRGGEKEVMGPRIRSSYNKFVDSPHKIYAGNLGWGLTSQS 241
           +MF+ SQIGGRTV+VNFPEVPRGGE EVM  +IR +   +VDSPHK+YAGNLGW LTSQ 
Sbjct: 183 QMFNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNLTSQG 242

Query: 242 LRDAFENQPGILSAKIIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNI 301
           L+DAF +QPG+L AK+IY+R +G+SRGFGF+SFE+AE+ +SAL +MNGVEVEGR LRLN+
Sbjct: 243 LKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRALRLNL 302

Query: 302 AAGQ-----SPISPAAFPRTENTIDGKELLTSISA 324
           A+ +     SP S       E +++  E+L+++SA
Sbjct: 303 ASEREKPTVSPPSVEEGETEEASLESNEVLSNVSA 329

BLAST of Cucsa.241970 vs. Swiss-Prot
Match: ROC2_NICPL (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 6.1e-41
Identity = 98/279 (35.13%), Postives = 160/279 (57.35%), Query Frame = 1

Query: 33  NQIPSHFSPKHNQLKLLNLTFHSPNFYPLSFSSVSHLHCAPPAFDELEISDPETEYGHIQ 92
           +Q PS   P ++ L   +L   S N   LS SS+ H     P           +++  + 
Sbjct: 16  SQTPSSLKP-NSTLSFFSLPSSSLNL-SLSSSSIGHSASIKPFESSFSTRVALSDFDQL- 75

Query: 93  ESDGEEETQEEDEQKVSVSREAGKLYIGNLPYAMTSSQLSEVFAEAGHVVSVQVIYDKVT 152
               E++ +  ++ + S   E  KL++GNLP+++ S+ L+ +F  AG+V  V+VIYDK++
Sbjct: 76  ----EDDVEVAEQPRFS---EDLKLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLS 135

Query: 153 DRSRGFAFVTMATLEEAKEAIRMFDGSQIGGRTVRVNFPEVP-----------RGGEKEV 212
            RSRGF FVTM+T EE + A + F+G +I GR +RVN    P           RGG    
Sbjct: 136 GRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSY 195

Query: 213 MGPRIRSSY------NKFVDSPHKIYAGNLGWGLTSQSLRDAFENQPGILSAKIIYDRAS 272
            G R  +S        + VDS +++Y GNL WG+   +L++ F  Q  ++ AK++YDR S
Sbjct: 196 GGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDS 255

Query: 273 GKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIA 295
           G+SRGFGFV++ +A++   A++S+NG++++GR +R++ A
Sbjct: 256 GRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVSAA 284

BLAST of Cucsa.241970 vs. Swiss-Prot
Match: ROC2_NICSY (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 1.0e-40
Identity = 106/295 (35.93%), Postives = 167/295 (56.61%), Query Frame = 1

Query: 17  VSSSPLYNKHFFTQHPNQIPSHFSPKHNQLKLLNLTFHSPNFYPLSFSSVSHLHCAPPAF 76
           ++SS + +  F    P Q PS   P ++ L   +L   S N   LS SS S   C+   F
Sbjct: 1   MASSSVSSLQFLFVTP-QTPSSLKP-NSTLSFFSLPSSSLN---LSLSSSSTGLCSIKPF 60

Query: 77  DELEISDPETEYGHIQESDGEEETQEEDEQKVSVSREAGKLYIGNLPYAMTSSQLSEVFA 136
           +    S   T          E++ +  ++ + S   E  KL++GNLP+++ S+ L+ +F 
Sbjct: 61  E----SSFSTRVALSGFDQLEDDVEVAEQPRFS---EDLKLFVGNLPFSVDSAALAGLFE 120

Query: 137 EAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQIGGRTVRVNFPEVP-- 196
            AG+V  V+VIYDK+T RSRGF FVTM+T EE + A + F+G +I GR +RVN    P  
Sbjct: 121 RAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAK 180

Query: 197 ---------RGGEKEVMGPRIRSSY------NKFVDSPHKIYAGNLGWGLTSQSLRDAFE 256
                    RGG     G R  +S        + VDS +++Y GNL WG+   +L++ F 
Sbjct: 181 RENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFS 240

Query: 257 NQPGILSAKIIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIA 295
            Q  ++ AK++YDR SG+SRGFGFV++ ++++   A++S+NGV+++GR +R++ A
Sbjct: 241 EQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAA 283

BLAST of Cucsa.241970 vs. Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 1.4e-40
Identity = 104/280 (37.14%), Postives = 164/280 (58.57%), Query Frame = 1

Query: 26  HFFTQHPNQIPSHFSPKHNQLKLLNLTFHS--PNFYPLSFSSVSHLHCAPPAF-DELEIS 85
           HF +  P  +P    PK    +  +L+F S  P+   LS SS S   C    F  ++ +S
Sbjct: 9   HFLSLTPQTLPL---PKPTS-QTTSLSFFSLPPSSLNLSLSSSSS--CFSSRFVRKVTLS 68

Query: 86  DPETEYGHIQE-SDGEEETQEEDEQKVSVSREAGKLYIGNLPYAMTSSQLSEVFAEAGHV 145
           D    +  I++  DG++  +EE      +     K+++GNLP++  S+ L+E+F  AG+V
Sbjct: 69  D----FDQIEDVEDGDDGVEEERNFSPDL-----KIFVGNLPFSADSAALAELFERAGNV 128

Query: 146 VSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQIGGRTVRVNFPEVPRGGEKEV 205
             V+VIYDK+T RSRGF FVTM++ EE + A + F+G ++ GR +RVN    P   E   
Sbjct: 129 EMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSS 188

Query: 206 M--GPRIRSSYNKFVDSPHKIYAGNLGWGLTSQSLRDAFENQPGILSAKIIYDRASGKSR 265
              G R   S+    DS +++Y GNL WG+   +L   F  Q  ++ AK++YDR SG+SR
Sbjct: 189 FRGGSRGGGSF----DSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSR 248

Query: 266 GFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAAGQSP 300
           GFGFV++ +AE+  +A+ES++GV++ GR +R++ A  + P
Sbjct: 249 GFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEARPP 269

BLAST of Cucsa.241970 vs. TrEMBL
Match: A0A0A0LBL6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G782700 PE=4 SV=1)

HSP 1 Score: 640.2 bits (1650), Expect = 1.4e-180
Identity = 322/323 (99.69%), Postives = 323/323 (100.00%), Query Frame = 1

Query: 1   MSAYSLSMAAAAAAASVSSSPLYNKHFFTQHPNQIPSHFSPKHNQLKLLNLTFHSPNFYP 60
           MSAYSLSMAAAAAAA+VSSSPLYNKHFFTQHPNQIPSHFSPKHNQLKLLNLTFHSPNFYP
Sbjct: 1   MSAYSLSMAAAAAAAAVSSSPLYNKHFFTQHPNQIPSHFSPKHNQLKLLNLTFHSPNFYP 60

Query: 61  LSFSSVSHLHCAPPAFDELEISDPETEYGHIQESDGEEETQEEDEQKVSVSREAGKLYIG 120
           LSFSSVSHLHCAPPAFDELEISDPETEYGHIQESDGEEETQEEDEQKVSVSREAGKLYIG
Sbjct: 61  LSFSSVSHLHCAPPAFDELEISDPETEYGHIQESDGEEETQEEDEQKVSVSREAGKLYIG 120

Query: 121 NLPYAMTSSQLSEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQ 180
           NLPYAMTSSQLSEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQ
Sbjct: 121 NLPYAMTSSQLSEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQ 180

Query: 181 IGGRTVRVNFPEVPRGGEKEVMGPRIRSSYNKFVDSPHKIYAGNLGWGLTSQSLRDAFEN 240
           IGGRTVRVNFPEVPRGGEKEVMGPRIRSSYNKFVDSPHKIYAGNLGWGLTSQSLRDAFEN
Sbjct: 181 IGGRTVRVNFPEVPRGGEKEVMGPRIRSSYNKFVDSPHKIYAGNLGWGLTSQSLRDAFEN 240

Query: 241 QPGILSAKIIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAAGQSPI 300
           QPGILSAKIIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAAGQSPI
Sbjct: 241 QPGILSAKIIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAAGQSPI 300

Query: 301 SPAAFPRTENTIDGKELLTSISA 324
           SPAAFPRTENTIDGKELLTSISA
Sbjct: 301 SPAAFPRTENTIDGKELLTSISA 323

BLAST of Cucsa.241970 vs. TrEMBL
Match: V4SRF4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012204mg PE=4 SV=1)

HSP 1 Score: 360.5 bits (924), Expect = 2.1e-96
Identity = 196/331 (59.21%), Postives = 251/331 (75.83%), Query Frame = 1

Query: 1   MSAYSLSMAAAAAAASVSSSPLYNKHFFTQHP-NQIPSHFSPKHNQ-LKLLNLTFHSPNF 60
           M+A ++SMAA+++  +     LYN    TQ P N +PS F  K  + LKL      +P+ 
Sbjct: 1   MAASTVSMAASSSLCN----KLYNLQAITQIPTNHLPSLFKTKSPKPLKLEKA--QNPSA 60

Query: 61  YPLSFSSVSHLHCAPPAFDELEISD-----PETEYGHIQESDGEEETQEEDEQKVSVSRE 120
             LS  S+SH      +FD  ++++     PETE    QE + EE  +EE+E KV+ S E
Sbjct: 61  LHLSLLSLSHFRQFSASFDGFQVTEDSQDEPETE----QEEEEEEAVEEEEEPKVAASDE 120

Query: 121 AGKLYIGNLPYAMTSSQLSEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAI 180
           A +LY+GNLPY+MTSS L+EVFAEAG V S +++YD+VTDRSRGF FVTM ++EEAKEAI
Sbjct: 121 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 180

Query: 181 RMFDGSQIGGRTVRVNFPEVPRGGEKEVMGPRIRSSYNKFVDSPHKIYAGNLGWGLTSQS 240
           R+FDGSQIGGRTV+VNFPEVPRGGE+  MGP++++SY  FVDSPHKIYAGNLGWGLTSQ 
Sbjct: 181 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 240

Query: 241 LRDAFENQPGILSAKIIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNI 300
           LRDAF+ QPG+LSAK+I++R +G+SRGFGFV+FETAED +SAL++MNGVEVEGRPLRLN+
Sbjct: 241 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNM 300

Query: 301 AAGQS-PISPAA-FPRTENTIDGKELLTSIS 323
           A  ++ P+S AA    TEN+IDG ELL+SIS
Sbjct: 301 ANERAPPVSLAAKETNTENSIDGSELLSSIS 321

BLAST of Cucsa.241970 vs. TrEMBL
Match: A0A067FTD7_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g020607mg PE=4 SV=1)

HSP 1 Score: 359.4 bits (921), Expect = 4.7e-96
Identity = 194/331 (58.61%), Postives = 252/331 (76.13%), Query Frame = 1

Query: 1   MSAYSLSMAAAAAAASVSSSPLYNKHFFTQHP-NQIPSHFSPKHNQ-LKLLNLTFHSPNF 60
           M+A ++SMAA+++  +     LYN    TQ P N +PS F  K  + LKL      +P+ 
Sbjct: 1   MAASTVSMAASSSLCN----KLYNLQAITQIPTNHLPSLFKTKSPKPLKLEKA--QNPSA 60

Query: 61  YPLSFSSVSHLHCAPPAFDELEISD-----PETEYGHIQESDGEEETQEEDEQKVSVSRE 120
             LS  S+S+      +FD  ++++     PETE    +E + EE  +EE+E KV+ S E
Sbjct: 61  LHLSLLSLSYFRQFSASFDGFQVTEDSQDEPETEQ---EEEEEEEAVEEEEEPKVAASDE 120

Query: 121 AGKLYIGNLPYAMTSSQLSEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAI 180
           A +LY+GNLPY+MTSS L+EVFAEAG V S +++YD+VTDRSRGF FVTM ++EEAKEAI
Sbjct: 121 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 180

Query: 181 RMFDGSQIGGRTVRVNFPEVPRGGEKEVMGPRIRSSYNKFVDSPHKIYAGNLGWGLTSQS 240
           R+FDGSQIGGRTV+VNFPEVPRGGE+  MGP++++SY  FVDSPHKIYAGNLGWGLTSQ 
Sbjct: 181 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 240

Query: 241 LRDAFENQPGILSAKIIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNI 300
           LRDAF+ QPG+LSAK+I++R +G+SRGFGFV+FETAED +SAL++MNGVEVEGRPLRLN+
Sbjct: 241 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNM 300

Query: 301 AAGQS-PISPAA-FPRTENTIDGKELLTSIS 323
           A  ++ P+ PAA   +TEN+IDG ELL+SIS
Sbjct: 301 ANERAPPVLPAAKETKTENSIDGSELLSSIS 322

BLAST of Cucsa.241970 vs. TrEMBL
Match: A5BE87_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_002607 PE=4 SV=1)

HSP 1 Score: 353.2 bits (905), Expect = 3.3e-94
Identity = 189/325 (58.15%), Postives = 238/325 (73.23%), Query Frame = 1

Query: 1   MSAYSLSMAAAAAAASVSSSPLYNKHFFTQHPNQIP--SHFSPKHNQLKLLNLTFHSPNF 60
           MSA SL+MAAAAAAA+ SSSP     +     + IP  +HF      LKL   + H P+ 
Sbjct: 140 MSASSLNMAAAAAAAAASSSPSLRIPYRISKLSLIPISTHFPSIPKPLKLTTQSAHFPH- 199

Query: 61  YPLSFSSVSHLHCAPPAFDELEISDPETEYGHIQESDGEEETQEEDEQ-KVSVSREAGKL 120
                    HL C      + ++ + E E    +E + EEE QEE+E  KVS S EA +L
Sbjct: 200 ---------HL-CRXTQHQDPQLQEEEEEEEEEEEEEEEEEQQEEEEDPKVSDSAEASRL 259

Query: 121 YIGNLPYAMTSSQLSEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFD 180
           Y+GNLPY+MTSSQL  VF EAG V+SV+++YD+VTDRSRGFAFVTM +++EAKEAIRMFD
Sbjct: 260 YVGNLPYSMTSSQLGXVFNEAGSVISVEIVYDRVTDRSRGFAFVTMGSVQEAKEAIRMFD 319

Query: 181 GSQIGGRTVRVNFPEVPRGGEKEVMGPRIRSSYNKFVDSPHKIYAGNLGWGLTSQSLRDA 240
           GSQ+GGRTV+VNFPEVPRGGE+ VMGP+IRSSY  FVDSP+KIYAGNL W LTS+ LRDA
Sbjct: 320 GSQVGGRTVKVNFPEVPRGGERAVMGPKIRSSYRGFVDSPYKIYAGNLSWRLTSEGLRDA 379

Query: 241 FENQPGILSAKIIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAAGQ 300
           F + PG+L AK+IY+R SG+SRGFGF+SF +AE+AESAL +M+ VEVEGRPLRLN+AA +
Sbjct: 380 FADXPGLLGAKVIYERESGRSRGFGFLSFASAENAESALNAMBEVEVEGRPLRLNLAAVR 439

Query: 301 SPISPAAFPRTENTIDGKELLTSIS 323
           +P +P+  P  E  +D  EL++SIS
Sbjct: 440 APPAPSPGPGLERNVDNSELISSIS 453

BLAST of Cucsa.241970 vs. TrEMBL
Match: A0A061ETW1_THECC (Chloroplast RNA-binding protein 33 OS=Theobroma cacao GN=TCM_022982 PE=4 SV=1)

HSP 1 Score: 349.0 bits (894), Expect = 6.3e-93
Identity = 185/335 (55.22%), Postives = 245/335 (73.13%), Query Frame = 1

Query: 1   MSAYSLSMAAAAAAASVSSSPLYNKH----FFTQHPNQIPSHFSPKHNQLKLLNLTFHSP 60
           MSA +L MAA  AAA+ S   L++ +      +   + +PS   P H QLK  NL   S 
Sbjct: 11  MSAPTLPMAATVAAAATS---LFSNNKLSTLLSSSLHSLPS--KPTHKQLKPFNLKTQSL 70

Query: 61  NFYPLSFS-SVSHLHCAPPAFDELEISD----PETEYGHIQESDGEEETQEEDEQKVSVS 120
           N  P S   S+  LHC   +FD   +++    P  EY      +   + +E +E+K+S S
Sbjct: 71  NSLPFSLHLSLPRLHCFAASFDSFLVTEDDRSPGEEYPESPNVEEPPQQEEAEEEKISES 130

Query: 121 R-EAGKLYIGNLPYAMTSSQLSEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAK 180
             E G+LY+GNLPY+MTSS+LSE+F EAG V +V+++YD+VTDRSRGFAFVTMA++++AK
Sbjct: 131 GGEEGRLYVGNLPYSMTSSELSEIFNEAGRVANVEIVYDRVTDRSRGFAFVTMASVDDAK 190

Query: 181 EAIRMFDGSQIGGRTVRVNFPEVPRGGEKEVMGPRIRSSYNKFVDSPHKIYAGNLGWGLT 240
           EAIR+FDGSQ+GGRTV+VNFPEVPRGGE+EVMGP+IR  Y  F+DSP+KIYAGNLGWG+T
Sbjct: 191 EAIRLFDGSQVGGRTVKVNFPEVPRGGEREVMGPKIRRGYKSFLDSPYKIYAGNLGWGVT 250

Query: 241 SQSLRDAFENQPGILSAKIIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLR 300
           SQ LRDAF +QPG+LSAK+IY+R +G+SRGFGFVSFE+AE  E+AL +MNGVEVEGRPLR
Sbjct: 251 SQGLRDAFASQPGLLSAKVIYERDTGRSRGFGFVSFESAETVEAALNAMNGVEVEGRPLR 310

Query: 301 LNIAAGQSP--ISPAAFPRTENTIDGKELLTSISA 324
           LN+AA ++P   SP     T+ +++  ELL+S++A
Sbjct: 311 LNMAADRAPGTPSPEMERNTKESLESSELLSSVTA 340

BLAST of Cucsa.241970 vs. TAIR10
Match: AT3G52380.1 (AT3G52380.1 chloroplast RNA-binding protein 33)

HSP 1 Score: 316.2 bits (809), Expect = 2.3e-86
Identity = 174/335 (51.94%), Postives = 229/335 (68.36%), Query Frame = 1

Query: 2   SAYSLSMAAAAAAASVSSSPLYNKHFFTQHPNQIPSHFSPKHNQLKLLNLTFHSPNFYPL 61
           SAY  S  A +AAA+ SS+  +N    +   +Q+   F+PK        L  + PN  PL
Sbjct: 3   SAYCSSAVAVSAAATASSAATFNPLLSSHSNSQLFYRFTPKS-----FKLVANCPN--PL 62

Query: 62  SFSSVSHLH---CAPP-----AFDELEISDPETEYGHIQESDGEEETQEEDEQKVSVSRE 121
              S    H   CA       A DE++ S  E E    +  +GEEE +EE +Q    S E
Sbjct: 63  ILHSNIRRHRFFCAAETEASSADDEIQASVEEEEEVEEEGDEGEEEVEEE-KQTTQASGE 122

Query: 122 AGKLYIGNLPYAMTSSQLSEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAI 181
            G+LY+GNLPY +TSS+LS++F EAG VV VQ++YDKVTDRSRGF FVTM ++EEAKEA+
Sbjct: 123 EGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAM 182

Query: 182 RMFDGSQIGGRTVRVNFPEVPRGGEKEVMGPRIRSSYNKFVDSPHKIYAGNLGWGLTSQS 241
           +MF+ SQIGGRTV+VNFPEVPRGGE EVM  +IR +   +VDSPHK+YAGNLGW LTSQ 
Sbjct: 183 QMFNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNLTSQG 242

Query: 242 LRDAFENQPGILSAKIIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNI 301
           L+DAF +QPG+L AK+IY+R +G+SRGFGF+SFE+AE+ +SAL +MNGVEVEGR LRLN+
Sbjct: 243 LKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRALRLNL 302

Query: 302 AAGQ-----SPISPAAFPRTENTIDGKELLTSISA 324
           A+ +     SP S       E +++  E+L+++SA
Sbjct: 303 ASEREKPTVSPPSVEEGETEEASLESNEVLSNVSA 329

BLAST of Cucsa.241970 vs. TAIR10
Match: AT2G37220.1 (AT2G37220.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 159.8 bits (403), Expect = 2.7e-39
Identity = 82/217 (37.79%), Postives = 136/217 (62.67%), Query Frame = 1

Query: 93  ESDGEEETQEEDEQKVSVSREAGKLYIGNLPYAMTSSQLSEVFAEAGHVVSVQVIYDKVT 152
           E DG  +     EQ  S      KL++GNLP+ + S+QL+++F  AG+V  V+VIYDK+T
Sbjct: 72  EEDGFADVAPPKEQSFSADL---KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKIT 131

Query: 153 DRSRGFAFVTMATLEEAKEAIRMFDGSQIGGRTVRVNF-PEVPRGGEKEVMGPRIR---- 212
            RSRGF FVTM+++ E + A + F+G ++ GR +RVN  P  P+  +    GPR      
Sbjct: 132 GRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSS 191

Query: 213 -SSY----NKFVDSPHKIYAGNLGWGLTSQSLRDAFENQPGILSAKIIYDRASGKSRGFG 272
            S Y         S +++Y GNL WG+   +L   F  Q  ++ A++IYDR SG+S+GFG
Sbjct: 192 GSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFG 251

Query: 273 FVSFETAEDAESALESMNGVEVEGRPLRLNIAAGQSP 300
           FV+++++++ ++A++S++G +++GR +R++ A  + P
Sbjct: 252 FVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEARPP 285

BLAST of Cucsa.241970 vs. TAIR10
Match: AT1G60000.1 (AT1G60000.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 146.0 bits (367), Expect = 4.1e-35
Identity = 72/203 (35.47%), Postives = 127/203 (62.56%), Query Frame = 1

Query: 98  EETQEEDEQKVSVSREAG---KLYIGNLPYAMTSSQLSEVFAEAGHVVSVQVIYDKVTDR 157
           EE +++D     +   A    KLY GNLPY + S+ L+++  +  +   V+V+Y++ T +
Sbjct: 65  EEEEKDDGASAVLDPPAAVNTKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQ 124

Query: 158 SRGFAFVTMATLEEAKEAIRMFDGSQIGGRTVRVNFPEVPRGGEKEVMGPRIRSSYNKFV 217
           SRGFAFVTM+ +E+    I   DG++  GR ++VNF + P+  ++ +           + 
Sbjct: 125 SRGFAFVTMSNVEDCNIIIDNLDGTEYLGRALKVNFADKPKPNKEPL-----------YP 184

Query: 218 DSPHKIYAGNLGWGLTSQSLRDAFENQPGILSAKIIYDRASGKSRGFGFVSFETAEDAES 277
           ++ HK++ GNL W +TS+SL  AF     ++ A++++D  +G+SRG+GFV + +  + E+
Sbjct: 185 ETEHKLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMET 244

Query: 278 ALESMNGVEVEGRPLRLNIAAGQ 298
           ALES++G E+EGR +R+N+A G+
Sbjct: 245 ALESLDGFELEGRAIRVNLAQGK 256


HSP 2 Score: 62.4 bits (150), Expect = 6.0e-10
Identity = 29/94 (30.85%), Postives = 52/94 (55.32%), Query Frame = 1

Query: 219 KIYAGNLGWGLTSQSLRDAFENQPGILSAKIIYDRASGKSRGFGFVSFETAEDAESALES 278
           K+Y GNL + + S +L    ++       +++Y+R +G+SRGF FV+    ED    +++
Sbjct: 86  KLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIIDN 145

Query: 279 MNGVEVEGRPLRLNIAAGQSPISPAAFPRTENTI 313
           ++G E  GR L++N A    P     +P TE+ +
Sbjct: 146 LDGTEYLGRALKVNFADKPKPNKEPLYPETEHKL 179

BLAST of Cucsa.241970 vs. TAIR10
Match: AT4G24770.1 (AT4G24770.1 31-kDa RNA binding protein)

HSP 1 Score: 141.4 bits (355), Expect = 1.0e-33
Identity = 77/222 (34.68%), Postives = 125/222 (56.31%), Query Frame = 1

Query: 78  ELEISDPETEYGHIQESDGEEETQEEDEQKVSVSREAGKLYIGNLPYAMTSSQLSEVFAE 137
           E + S+ +   G   E D  E    E  +    S EA KL++GNL Y + S  L+ +F +
Sbjct: 114 EGDASEGDVSEGDESEGDVSEGAVSERAEFPEPSEEA-KLFVGNLAYDVNSQALAMLFEQ 173

Query: 138 AGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQIGGRTVRVNFPEVPRGG 197
           AG V   +VIY++ TD+SRGF FVTM++++EA+ A+  F+   + GR + VN    PRG 
Sbjct: 174 AGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVN-KAAPRGS 233

Query: 198 EKEVMGPRIRSSYNKFVDSPHKIYAGNLGWGLTSQSLRDAFENQPGILSAKIIYDRASGK 257
             E   PR+        +   ++Y GNL W + +  L   F     ++ A+++YDR +G+
Sbjct: 234 RPE-RAPRV-------YEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGR 293

Query: 258 SRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAAGQSP 300
           SRGFGFV+    ++   A+ +++G  +EGR +R+N+A  + P
Sbjct: 294 SRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEERPP 325


HSP 2 Score: 85.5 bits (210), Expect = 6.6e-17
Identity = 51/148 (34.46%), Postives = 78/148 (52.70%), Query Frame = 1

Query: 52  TFHSPNFYPLSFSSVSHLHCAPPAFDELEISDPETEYGHIQESDGEEETQEEDEQKVSVS 111
           T  S  F  ++ SSV     A   F+  +++      G +   +         E+   V 
Sbjct: 187 TDQSRGFGFVTMSSVDEAETAVEKFNRYDLN------GRLLTVNKAAPRGSRPERAPRVY 246

Query: 112 REAGKLYIGNLPYAMTSSQLSEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKE 171
             A ++Y+GNLP+ + + +L ++F+E G VV  +V+YD+ T RSRGF FVTM+ ++E  E
Sbjct: 247 EPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNE 306

Query: 172 AIRMFDGSQIGGRTVRVNFPE--VPRGG 198
           AI   DG  + GR +RVN  E   PR G
Sbjct: 307 AISALDGQNLEGRAIRVNVAEERPPRRG 328

BLAST of Cucsa.241970 vs. TAIR10
Match: AT3G52150.1 (AT3G52150.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 140.6 bits (353), Expect = 1.7e-33
Identity = 73/196 (37.24%), Postives = 119/196 (60.71%), Query Frame = 1

Query: 99  ETQEEDEQKVSVSREAGKLYIGNLPYAMTSSQLSEVFAEAGHVVSVQVIYDKVTDRSRGF 158
           ET+E+       S  A ++YIGN+P  +T+ QL+++  E G V  VQV+YDK + RSR F
Sbjct: 60  ETEEKPAALDPSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRF 119

Query: 159 AFVTMATLEEAKEAIRMFDGSQIGGRTVRVNFPEVPRGGEKEVMGPRIRSSYNKFVDSPH 218
            F TM ++E+A   +   +G+ + GR ++VN  E P     ++    ++S  + FVDSP+
Sbjct: 120 GFATMKSVEDANAVVEKLNGNTVEGREIKVNITEKPIASSPDL--SVLQSEDSAFVDSPY 179

Query: 219 KIYAGNLGWGLTSQSLRDAFENQPGILSAKIIYDRASGKSRGFGFVSFETAEDAESALES 278
           K+Y GNL   +T + L + F  +  ++SAK+     + KS GFGFV+F + ED E+A+ +
Sbjct: 180 KVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVA 239

Query: 279 MNGVEVEGRPLRLNIA 295
           +N   +EG+ +R+N A
Sbjct: 240 LNNSLLEGQKIRVNKA 253

BLAST of Cucsa.241970 vs. NCBI nr
Match: gi|778684506|ref|XP_004136521.2| (PREDICTED: 33 kDa ribonucleoprotein, chloroplastic [Cucumis sativus])

HSP 1 Score: 640.2 bits (1650), Expect = 2.0e-180
Identity = 322/323 (99.69%), Postives = 323/323 (100.00%), Query Frame = 1

Query: 1   MSAYSLSMAAAAAAASVSSSPLYNKHFFTQHPNQIPSHFSPKHNQLKLLNLTFHSPNFYP 60
           MSAYSLSMAAAAAAA+VSSSPLYNKHFFTQHPNQIPSHFSPKHNQLKLLNLTFHSPNFYP
Sbjct: 1   MSAYSLSMAAAAAAAAVSSSPLYNKHFFTQHPNQIPSHFSPKHNQLKLLNLTFHSPNFYP 60

Query: 61  LSFSSVSHLHCAPPAFDELEISDPETEYGHIQESDGEEETQEEDEQKVSVSREAGKLYIG 120
           LSFSSVSHLHCAPPAFDELEISDPETEYGHIQESDGEEETQEEDEQKVSVSREAGKLYIG
Sbjct: 61  LSFSSVSHLHCAPPAFDELEISDPETEYGHIQESDGEEETQEEDEQKVSVSREAGKLYIG 120

Query: 121 NLPYAMTSSQLSEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQ 180
           NLPYAMTSSQLSEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQ
Sbjct: 121 NLPYAMTSSQLSEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQ 180

Query: 181 IGGRTVRVNFPEVPRGGEKEVMGPRIRSSYNKFVDSPHKIYAGNLGWGLTSQSLRDAFEN 240
           IGGRTVRVNFPEVPRGGEKEVMGPRIRSSYNKFVDSPHKIYAGNLGWGLTSQSLRDAFEN
Sbjct: 181 IGGRTVRVNFPEVPRGGEKEVMGPRIRSSYNKFVDSPHKIYAGNLGWGLTSQSLRDAFEN 240

Query: 241 QPGILSAKIIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAAGQSPI 300
           QPGILSAKIIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAAGQSPI
Sbjct: 241 QPGILSAKIIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAAGQSPI 300

Query: 301 SPAAFPRTENTIDGKELLTSISA 324
           SPAAFPRTENTIDGKELLTSISA
Sbjct: 301 SPAAFPRTENTIDGKELLTSISA 323

BLAST of Cucsa.241970 vs. NCBI nr
Match: gi|659084517|ref|XP_008442930.1| (PREDICTED: 33 kDa ribonucleoprotein, chloroplastic isoform X2 [Cucumis melo])

HSP 1 Score: 602.1 bits (1551), Expect = 5.9e-169
Identity = 303/323 (93.81%), Postives = 312/323 (96.59%), Query Frame = 1

Query: 1   MSAYSLSMAAAAAAASVSSSPLYNKHFFTQHPNQIPSHFSPKHNQLKLLNLTFHSPNFYP 60
           MSAYSL  AAAAAAAS SSSPLY KHFFTQHPNQIPSHFSPKHN+LKLLNLT H PNFYP
Sbjct: 1   MSAYSL--AAAAAAASASSSPLYKKHFFTQHPNQIPSHFSPKHNKLKLLNLTIHLPNFYP 60

Query: 61  LSFSSVSHLHCAPPAFDELEISDPETEYGHIQESDGEEETQEEDEQKVSVSREAGKLYIG 120
           LSFSSVSH+HCAPPAFDELEISDPETEYG +QESDGEE+TQEEDEQK+SVSREAGKLYIG
Sbjct: 61  LSFSSVSHIHCAPPAFDELEISDPETEYGDVQESDGEEQTQEEDEQKISVSREAGKLYIG 120

Query: 121 NLPYAMTSSQLSEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQ 180
           NLPYAMTSSQLSEVFAEAG VVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQ
Sbjct: 121 NLPYAMTSSQLSEVFAEAGQVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQ 180

Query: 181 IGGRTVRVNFPEVPRGGEKEVMGPRIRSSYNKFVDSPHKIYAGNLGWGLTSQSLRDAFEN 240
           IGGRTVRVNFPEVPRGGEKEVMGP+IRSSYNKFVDSPHKIYAGNLGWGLTSQSLRDAFEN
Sbjct: 181 IGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLRDAFEN 240

Query: 241 QPGILSAKIIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAAGQSPI 300
           QPGILSAK+IYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAA ++P 
Sbjct: 241 QPGILSAKVIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAAERAPT 300

Query: 301 SPAAFPRTENTIDGKELLTSISA 324
           SPAAFPRTENTID KELLTSISA
Sbjct: 301 SPAAFPRTENTIDSKELLTSISA 321

BLAST of Cucsa.241970 vs. NCBI nr
Match: gi|659084515|ref|XP_008442929.1| (PREDICTED: 33 kDa ribonucleoprotein, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 534.3 bits (1375), Expect = 1.5e-148
Identity = 267/282 (94.68%), Postives = 274/282 (97.16%), Query Frame = 1

Query: 1   MSAYSLSMAAAAAAASVSSSPLYNKHFFTQHPNQIPSHFSPKHNQLKLLNLTFHSPNFYP 60
           MSAYSL  AAAAAAAS SSSPLY KHFFTQHPNQIPSHFSPKHN+LKLLNLT H PNFYP
Sbjct: 1   MSAYSL--AAAAAAASASSSPLYKKHFFTQHPNQIPSHFSPKHNKLKLLNLTIHLPNFYP 60

Query: 61  LSFSSVSHLHCAPPAFDELEISDPETEYGHIQESDGEEETQEEDEQKVSVSREAGKLYIG 120
           LSFSSVSH+HCAPPAFDELEISDPETEYG +QESDGEE+TQEEDEQK+SVSREAGKLYIG
Sbjct: 61  LSFSSVSHIHCAPPAFDELEISDPETEYGDVQESDGEEQTQEEDEQKISVSREAGKLYIG 120

Query: 121 NLPYAMTSSQLSEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQ 180
           NLPYAMTSSQLSEVFAEAG VVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQ
Sbjct: 121 NLPYAMTSSQLSEVFAEAGQVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQ 180

Query: 181 IGGRTVRVNFPEVPRGGEKEVMGPRIRSSYNKFVDSPHKIYAGNLGWGLTSQSLRDAFEN 240
           IGGRTVRVNFPEVPRGGEKEVMGP+IRSSYNKFVDSPHKIYAGNLGWGLTSQSLRDAFEN
Sbjct: 181 IGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLRDAFEN 240

Query: 241 QPGILSAKIIYDRASGKSRGFGFVSFETAEDAESALESMNGV 283
           QPGILSAK+IYDRASGKSRGFGFVSFETAEDAESALESMNGV
Sbjct: 241 QPGILSAKVIYDRASGKSRGFGFVSFETAEDAESALESMNGV 280

BLAST of Cucsa.241970 vs. NCBI nr
Match: gi|659084515|ref|XP_008442929.1| (PREDICTED: 33 kDa ribonucleoprotein, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 66.6 bits (161), Expect = 9.0e-08
Identity = 28/74 (37.84%), Postives = 48/74 (64.86%), Query Frame = 1

Query: 219 KIYAGNLGWGLTSQSLRDAFENQPGILSAKIIYDRASGKSRGFGFVSFETAEDAESALES 278
           K+Y GNL + +TS  L + F     ++S ++IYD+ + +SRGF FV+  T E+A+ A+  
Sbjct: 114 KLYIGNLPYAMTSSQLSEVFAEAGQVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRM 173

Query: 279 MNGVEVEGRPLRLN 293
            +G ++ GR +R+N
Sbjct: 174 FDGSQIGGRTVRVN 187


HSP 2 Score: 360.5 bits (924), Expect = 3.0e-96
Identity = 196/331 (59.21%), Postives = 251/331 (75.83%), Query Frame = 1

Query: 1   MSAYSLSMAAAAAAASVSSSPLYNKHFFTQHP-NQIPSHFSPKHNQ-LKLLNLTFHSPNF 60
           M+A ++SMAA+++  +     LYN    TQ P N +PS F  K  + LKL      +P+ 
Sbjct: 1   MAASTVSMAASSSLCN----KLYNLQAITQIPTNHLPSLFKTKSPKPLKLEKA--QNPSA 60

Query: 61  YPLSFSSVSHLHCAPPAFDELEISD-----PETEYGHIQESDGEEETQEEDEQKVSVSRE 120
             LS  S+SH      +FD  ++++     PETE    QE + EE  +EE+E KV+ S E
Sbjct: 61  LHLSLLSLSHFRQFSASFDGFQVTEDSQDEPETE----QEEEEEEAVEEEEEPKVAASDE 120

Query: 121 AGKLYIGNLPYAMTSSQLSEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAI 180
           A +LY+GNLPY+MTSS L+EVFAEAG V S +++YD+VTDRSRGF FVTM ++EEAKEAI
Sbjct: 121 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 180

Query: 181 RMFDGSQIGGRTVRVNFPEVPRGGEKEVMGPRIRSSYNKFVDSPHKIYAGNLGWGLTSQS 240
           R+FDGSQIGGRTV+VNFPEVPRGGE+  MGP++++SY  FVDSPHKIYAGNLGWGLTSQ 
Sbjct: 181 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 240

Query: 241 LRDAFENQPGILSAKIIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNI 300
           LRDAF+ QPG+LSAK+I++R +G+SRGFGFV+FETAED +SAL++MNGVEVEGRPLRLN+
Sbjct: 241 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNM 300

Query: 301 AAGQS-PISPAA-FPRTENTIDGKELLTSIS 323
           A  ++ P+S AA    TEN+IDG ELL+SIS
Sbjct: 301 ANERAPPVSLAAKETNTENSIDGSELLSSIS 321

BLAST of Cucsa.241970 vs. NCBI nr
Match: gi|568856072|ref|XP_006481614.1| (PREDICTED: 33 kDa ribonucleoprotein, chloroplastic [Citrus sinensis])

HSP 1 Score: 360.1 bits (923), Expect = 3.9e-96
Identity = 195/331 (58.91%), Postives = 250/331 (75.53%), Query Frame = 1

Query: 1   MSAYSLSMAAAAAAASVSSSPLYNKHFFTQHP-NQIPSHFSPKHNQ-LKLLNLTFHSPNF 60
           M+A ++SMAA+++  +     LYN    TQ P N +PS F  K  + LKL      +P+ 
Sbjct: 1   MAASTVSMAASSSLCN----KLYNLQAITQIPTNHLPSLFKTKSPKPLKLEKA--QNPSA 60

Query: 61  YPLSFSSVSHLHCAPPAFDELEISD-----PETEYGHIQESDGEEETQEEDEQKVSVSRE 120
             LS  S+SH       FD   +++     PETE    +E + EE  +EE+E KV+ S E
Sbjct: 61  LHLSLLSLSHFRQFSALFDGFRVTEDSQDEPETEQ---EEEEEEEAVEEEEEPKVAASDE 120

Query: 121 AGKLYIGNLPYAMTSSQLSEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAI 180
           A +LY+GNLPY+MTSS L+EVFAEAG V S +++YD+VTDRSRGF FVTM ++EEAKEAI
Sbjct: 121 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 180

Query: 181 RMFDGSQIGGRTVRVNFPEVPRGGEKEVMGPRIRSSYNKFVDSPHKIYAGNLGWGLTSQS 240
           R+FDGSQIGGRTV+VNFPEVPRGGE+  MGP++++SY  FVDSPHKIYAGNLGWGLTSQ 
Sbjct: 181 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 240

Query: 241 LRDAFENQPGILSAKIIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNI 300
           LRDAF+ QPG+LSAK+I++R +G+SRGFGFV+FETAED +SAL++MNGVEVEGRPLRLN+
Sbjct: 241 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNM 300

Query: 301 AAGQS-PISPAA-FPRTENTIDGKELLTSIS 323
           A  ++ P+ PAA   +TEN+IDG ELL+SIS
Sbjct: 301 ANERAPPVLPAAKETKTENSIDGSELLSSIS 322

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
ROC5_NICSY3.3e-8753.5633 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1[more]
CP33_ARATH4.1e-8551.94RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana GN=CP33 PE=2 SV=... [more]
ROC2_NICPL6.1e-4135.1331 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1[more]
ROC2_NICSY1.0e-4035.9329 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1[more]
ROC1_NICSY1.4e-4037.1429 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0LBL6_CUCSA1.4e-18099.69Uncharacterized protein OS=Cucumis sativus GN=Csa_3G782700 PE=4 SV=1[more]
V4SRF4_9ROSI2.1e-9659.21Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012204mg PE=4 SV=1[more]
A0A067FTD7_CITSI4.7e-9658.61Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g020607mg PE=4 SV=1[more]
A5BE87_VITVI3.3e-9458.15Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_002607 PE=4 SV=1[more]
A0A061ETW1_THECC6.3e-9355.22Chloroplast RNA-binding protein 33 OS=Theobroma cacao GN=TCM_022982 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT3G52380.12.3e-8651.94 chloroplast RNA-binding protein 33[more]
AT2G37220.12.7e-3937.79 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT1G60000.14.1e-3535.47 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT4G24770.11.0e-3334.68 31-kDa RNA binding protein[more]
AT3G52150.11.7e-3337.24 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
Match NameE-valueIdentityDescription
gi|778684506|ref|XP_004136521.2|2.0e-18099.69PREDICTED: 33 kDa ribonucleoprotein, chloroplastic [Cucumis sativus][more]
gi|659084517|ref|XP_008442930.1|5.9e-16993.81PREDICTED: 33 kDa ribonucleoprotein, chloroplastic isoform X2 [Cucumis melo][more]
gi|659084515|ref|XP_008442929.1|1.5e-14894.68PREDICTED: 33 kDa ribonucleoprotein, chloroplastic isoform X1 [Cucumis melo][more]
gi|659084515|ref|XP_008442929.1|9.0e-0837.84PREDICTED: 33 kDa ribonucleoprotein, chloroplastic isoform X1 [Cucumis melo][more]
gi|568856072|ref|XP_006481614.1|3.9e-9658.91PREDICTED: 33 kDa ribonucleoprotein, chloroplastic [Citrus sinensis][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0000166nucleotide binding
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0009507 chloroplast
cellular_component GO:0030529 intracellular ribonucleoprotein complex
cellular_component GO:0019013 viral nucleocapsid
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000166 nucleotide binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.241970.1Cucsa.241970.1mRNA


Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 220..290
score: 1.1E-19coord: 117..187
score: 2.1
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 219..292
score: 5.5E-26coord: 116..189
score: 7.7
IPR000504RNA recognition motif domainPROFILEPS50102RRMcoord: 115..193
score: 19.4coord: 218..296
score: 18
IPR012677Nucleotide-binding alpha-beta plait domainGENE3DG3DSA:3.30.70.330coord: 91..195
score: 1.7E-28coord: 214..297
score: 2.7
IPR012677Nucleotide-binding alpha-beta plait domainunknownSSF54928RNA-binding domain, RBDcoord: 112..192
score: 1.29E-27coord: 213..301
score: 5.51
NoneNo IPR availablePANTHERPTHR24012FAMILY NOT NAMEDcoord: 85..201
score: 2.8E-55coord: 217..294
score: 2.8

The following gene(s) are paralogous to this gene:

None