ClCG10G018230 (gene) Watermelon (Charleston Gray)

NameClCG10G018230
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionRNA-binding protein
LocationCG_Chr10 : 33178628 .. 33180545 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTAGATTTTCATCTTTCAATTTCTGAAGCTCCCCGGAGCAGAATCCATCTCTGTCACTTGGGGAATTCCACCATTTCCATTTTCTTCCTCAAATGTCAGCTTCTTCTGTCTCAATGGCTGCTGCTACTACAGCAACTTCGGTTTCCTCTTCTTCTCCATTCTCCAAGAAACTTTTCTTCACTCAACATCCCAACCAAATTCCCTCCCATTTTTCTCCGAAACAGAACCCATTGAAGCTTCTCAACCTCCGGATTCATTTACCCAAACTTTACCCTCTTTCCTTTTCCTCTTCTTCTCATCTCCACTGTGCTCCTCCTGCTTTCGATGGGCTCCAAGTCTCCGACTCTGAGACAGAATACGCAGAGGTACAAGAATCGTATGGAGAAGAAGAAACCCAAGAAGACGAACAAAAGGTATCAGTGTCTCGCGAAGCAGGGAAGCTTTATGTTGGGAATTTACCATATGCTATGACTTCTTCCCAATTGTCTGAGGTCTTCACCGAAGCTGGTCATGTGGTTTCTGTACAGGTTTGGGATTGAACTAGTTTTTTTATCTGAATATTCTGAATCGATTCTTTTAGGGCTTATCGGGACTGCTTAGCGATTGTTGGTTTCTTATGTGTTTATCTTCTGAATCTTCTGTTAGGTTATATATGACAAAGTTACGGATAGGAGTAGGGGATTTGCATTTGTGACAATGGCCACTTTGGAGGAAGCTAAAGAAGCAATTCGGATGTTTGATGGCTCTGTAATTACTTATATTCTTTCTCTTTTTTGTTTCATTTTCTTTTAGCTTAAGAATTGTGCACATTTTTCCATACTTTCTAACTTTGAAGTAAAACAATGGTTAAACTTTGGAGAAAGTCAATTTACCAGTAGGCAAATTCTAGTGTTGGAGTGCTTTTCCGTTAATTGAGCCATTGGCATATCATGGTGTCTCTACAAATATTTTGTTATGGCATTGTTGGTGCCTTTGTAGAATTAGATGATATTACTGTTAGTGTTAGACATTCAAGGGTGGTGGTGATTCGAATACAATAGTCACAAATAGACTACAAATGCTCAGTCTTATAGTTTTGACATCATGGTATGACGTCTCTAAATGATTGAGAAATTTATTGATAGTGTAAGATATTCAAGATTGCTATAAGCTAATGGTTGCACTGCTTGTCAGCAAATCGGTGGTCGAACTGTTCGGGTGAACTTCCCTGAAGTGCCAAGGGGAGGAGAAAAGGAAGTCATGGGGCCAAAGATAAGAAGCAGCTATAACAAATTTGTAGATAGTCCTCACAAGATATATGCAGGGAACCTTGGTTGGGGTCTCACTTCTCAGAGTCTTAGAGAGGCTTTTGAAAACCAACCAGGGATATTGAGTGCCAAGGTCATCTATGATAGGGCATCTGGAAAAAGTAGAGGTTTTGGATTTGTATCCTTCGAAACTGCTGAGGATGCAGAGTCTGCTTTGGAGTCCATGAATGGAGTGGTAAGGAAGTGGAGTTACTTTCTAAAAGAATGAGAATCTAGAATTAATTATTCAAATAGAGTAGTTGGCAATATGATTCTAGAAAGAAGACAACTTGAAAATGTGACAGAATTTACTGATGTGACTGATCCCTAACTACATTATTATTTTTTAACTACCTCTAAATGGGCCCATATTAACATAAACCTTGCAAACCGGAATTACATTATTTGAGAAATAGCCATGAGAAATGTACCTGCATTTTGTATATTCAGTCCTGTGTTATAGATACAAGTCACACATTGACCTCTTCCTATGCAAATATGCTGACAGGAAGTTGAAGGGCGGCCGCTTCGTTTGAACATTGCTGCAGGGCAGGCCCTGACTTCCCCAGCAGCATTCACGAGGACTGAAAATGAAATTGACAGCAAAGAATTGCTTACCAGTATCAGTGCC

mRNA sequence

CTTAGATTTTCATCTTTCAATTTCTGAAGCTCCCCGGAGCAGAATCCATCTCTGTCACTTGGGGAATTCCACCATTTCCATTTTCTTCCTCAAATGTCAGCTTCTTCTGTCTCAATGGCTGCTGCTACTACAGCAACTTCGGTTTCCTCTTCTTCTCCATTCTCCAAGAAACTTTTCTTCACTCAACATCCCAACCAAATTCCCTCCCATTTTTCTCCGAAACAGAACCCATTGAAGCTTCTCAACCTCCGGATTCATTTACCCAAACTTTACCCTCTTTCCTTTTCCTCTTCTTCTCATCTCCACTGTGCTCCTCCTGCTTTCGATGGGCTCCAAGTCTCCGACTCTGAGACAGAATACGCAGAGGTACAAGAATCGTATGGAGAAGAAGAAACCCAAGAAGACGAACAAAAGGTATCAGTGTCTCGCGAAGCAGGGAAGCTTTATGTTGGGAATTTACCATATGCTATGACTTCTTCCCAATTGTCTGAGGTCTTCACCGAAGCTGGTCATGTGGTTTCTGTACAGGTTATATATGACAAAGTTACGGATAGGAGTAGGGGATTTGCATTTGTGACAATGGCCACTTTGGAGGAAGCTAAAGAAGCAATTCGGATGTTTGATGGCTCTCAAATCGGTGGTCGAACTGTTCGGGTGAACTTCCCTGAAGTGCCAAGGGGAGGAGAAAAGGAAGTCATGGGGCCAAAGATAAGAAGCAGCTATAACAAATTTGTAGATAGTCCTCACAAGATATATGCAGGGAACCTTGGTTGGGGTCTCACTTCTCAGAGTCTTAGAGAGGCTTTTGAAAACCAACCAGGGATATTGAGTGCCAAGGTCATCTATGATAGGGCATCTGGAAAAAGTAGAGGTTTTGGATTTGTATCCTTCGAAACTGCTGAGGATGCAGAGTCTGCTTTGGAGTCCATGAATGGAGTGGAAGTTGAAGGGCGGCCGCTTCGTTTGAACATTGCTGCAGGGCAGGCCCTGACTTCCCCAGCAGCATTCACGAGGACTGAAAATGAAATTGACAGCAAAGAATTGCTTACCAGTATCAGTGCC

Coding sequence (CDS)

ATGTCAGCTTCTTCTGTCTCAATGGCTGCTGCTACTACAGCAACTTCGGTTTCCTCTTCTTCTCCATTCTCCAAGAAACTTTTCTTCACTCAACATCCCAACCAAATTCCCTCCCATTTTTCTCCGAAACAGAACCCATTGAAGCTTCTCAACCTCCGGATTCATTTACCCAAACTTTACCCTCTTTCCTTTTCCTCTTCTTCTCATCTCCACTGTGCTCCTCCTGCTTTCGATGGGCTCCAAGTCTCCGACTCTGAGACAGAATACGCAGAGGTACAAGAATCGTATGGAGAAGAAGAAACCCAAGAAGACGAACAAAAGGTATCAGTGTCTCGCGAAGCAGGGAAGCTTTATGTTGGGAATTTACCATATGCTATGACTTCTTCCCAATTGTCTGAGGTCTTCACCGAAGCTGGTCATGTGGTTTCTGTACAGGTTATATATGACAAAGTTACGGATAGGAGTAGGGGATTTGCATTTGTGACAATGGCCACTTTGGAGGAAGCTAAAGAAGCAATTCGGATGTTTGATGGCTCTCAAATCGGTGGTCGAACTGTTCGGGTGAACTTCCCTGAAGTGCCAAGGGGAGGAGAAAAGGAAGTCATGGGGCCAAAGATAAGAAGCAGCTATAACAAATTTGTAGATAGTCCTCACAAGATATATGCAGGGAACCTTGGTTGGGGTCTCACTTCTCAGAGTCTTAGAGAGGCTTTTGAAAACCAACCAGGGATATTGAGTGCCAAGGTCATCTATGATAGGGCATCTGGAAAAAGTAGAGGTTTTGGATTTGTATCCTTCGAAACTGCTGAGGATGCAGAGTCTGCTTTGGAGTCCATGAATGGAGTGGAAGTTGAAGGGCGGCCGCTTCGTTTGAACATTGCTGCAGGGCAGGCCCTGACTTCCCCAGCAGCATTCACGAGGACTGAAAATGAAATTGACAGCAAAGAATTGCTTACCAGTATCAGTGCC

Protein sequence

MSASSVSMAAATTATSVSSSSPFSKKLFFTQHPNQIPSHFSPKQNPLKLLNLRIHLPKLYPLSFSSSSHLHCAPPAFDGLQVSDSETEYAEVQESYGEEETQEDEQKVSVSREAGKLYVGNLPYAMTSSQLSEVFTEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLREAFENQPGILSAKVIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAAGQALTSPAAFTRTENEIDSKELLTSISA
BLAST of ClCG10G018230 vs. Swiss-Prot
Match: ROC5_NICSY (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 323.6 bits (828), Expect = 2.5e-87
Identity = 177/329 (53.80%), Postives = 227/329 (69.00%), Query Frame = 1

Query: 1   MSASSVSMAAATTATSVSSSSPFSKKLFFTQHPNQIPS---HFSPKQNPLKLLNLRIHLP 60
           MS    S AA  + +S S    F++K  F+     + +   HF+ K N  KL   + H P
Sbjct: 1   MSGCCFSFAATASTSSTSLLYLFTQKPKFSVDHLSLSTYNTHFNFKINSTKL---KAHFP 60

Query: 61  KLYPLSFSSSSHLHCAPPAFDGLQVSDSETEYAEVQESYGEEETQEDEQKV-SVSREAGK 120
                 + SS  L       DG++V   + E      +  EEE +E E++V S S E G+
Sbjct: 61  --ISSLYRSSIFLSTCASVSDGVEVVQEDDEEEVALSAEEEEEIEEKEERVESESVEGGR 120

Query: 121 LYVGNLPYAMTSSQLSEVFTEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMF 180
           LYVGNLP++MTSSQLSE+F EAG V +V+++YD+VTDRSRGFAFVTM ++EEAKEAIR+F
Sbjct: 121 LYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLF 180

Query: 181 DGSQIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLRE 240
           DGSQ+GGRTV+VNFPEVPRGGE+EVM  KIRS+Y  FVDSPHK+Y  NL W LTSQ LR+
Sbjct: 181 DGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFVDSPHKLYVANLSWALTSQGLRD 240

Query: 241 AFENQPGILSAKVIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAAG 300
           AF +QPG +SAKVIYDR+SG+SRGFGF++F +AE   SAL++MN VE+EGRPLRLN+A  
Sbjct: 241 AFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVELEGRPLRLNVAGQ 300

Query: 301 QALTS--PAAFTRTENEIDSKELLTSISA 324
           +A  S  P   T  EN+ D+ ELL+S+S+
Sbjct: 301 KAPVSSPPVVETSPENDSDNSELLSSLSS 324

BLAST of ClCG10G018230 vs. Swiss-Prot
Match: CP33_ARATH (RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana GN=CP33 PE=2 SV=1)

HSP 1 Score: 316.2 bits (809), Expect = 4.1e-85
Identity = 175/337 (51.93%), Postives = 229/337 (67.95%), Query Frame = 1

Query: 1   MSASSVSMAAATTATSVSSSSPFSKKLFFTQHPNQIPSHFSPKQ--------NPLKL-LN 60
           MS++  S A A +A + +SS+     L  +   +Q+   F+PK         NPL L  N
Sbjct: 1   MSSAYCSSAVAVSAAATASSAATFNPLLSSHSNSQLFYRFTPKSFKLVANCPNPLILHSN 60

Query: 61  LRIHLPKLYPLSFSSSSHLHCAPPAFDGLQVSDSETEYAEVQESYGEEETQEDEQKVSVS 120
           +R H        F  ++    A  A D +Q S  E E  E +   GEEE +E++Q    S
Sbjct: 61  IRRH-------RFFCAAETE-ASSADDEIQASVEEEEEVEEEGDEGEEEVEEEKQTTQAS 120

Query: 121 REAGKLYVGNLPYAMTSSQLSEVFTEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKE 180
            E G+LYVGNLPY +TSS+LS++F EAG VV VQ++YDKVTDRSRGF FVTM ++EEAKE
Sbjct: 121 GEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKE 180

Query: 181 AIRMFDGSQIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTS 240
           A++MF+ SQIGGRTV+VNFPEVPRGGE EVM  KIR +   +VDSPHK+YAGNLGW LTS
Sbjct: 181 AMQMFNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNLTS 240

Query: 241 QSLREAFENQPGILSAKVIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRL 300
           Q L++AF +QPG+L AKVIY+R +G+SRGFGF+SFE+AE+ +SAL +MNGVEVEGR LRL
Sbjct: 241 QGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRALRL 300

Query: 301 NIAA--GQALTSPAAFTRTENE---IDSKELLTSISA 324
           N+A+   +   SP +    E E   ++S E+L+++SA
Sbjct: 301 NLASEREKPTVSPPSVEEGETEEASLESNEVLSNVSA 329

BLAST of ClCG10G018230 vs. Swiss-Prot
Match: ROC2_NICSY (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 4.7e-41
Identity = 112/313 (35.78%), Postives = 169/313 (53.99%), Query Frame = 1

Query: 1   MSASSVSMAAATTATSVSSSSPFSKKLFFTQHPNQIPSHFSPKQNPLKLLNLRIHLPKLY 60
           M++SSVS   +     V+  +P S K      PN   S FS   + L L           
Sbjct: 1   MASSSVS---SLQFLFVTPQTPSSLK------PNSTLSFFSLPSSSLNL----------- 60

Query: 61  PLSFSSSSHLHCAPPAFDGLQVSDSETEYAEVQESYGEEETQEDEQKVSVSR--EAGKLY 120
             S SSSS   C+   F        E+ ++      G ++ ++D +     R  E  KL+
Sbjct: 61  --SLSSSSTGLCSIKPF--------ESSFSTRVALSGFDQLEDDVEVAEQPRFSEDLKLF 120

Query: 121 VGNLPYAMTSSQLSEVFTEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDG 180
           VGNLP+++ S+ L+ +F  AG+V  V+VIYDK+T RSRGF FVTM+T EE + A + F+G
Sbjct: 121 VGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQFNG 180

Query: 181 SQIGGRTVRVNFPEVP-----------RGGEKEVMGPKIRSSY------NKFVDSPHKIY 240
            +I GR +RVN    P           RGG     G +  +S        + VDS +++Y
Sbjct: 181 YEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVY 240

Query: 241 AGNLGWGLTSQSLREAFENQPGILSAKVIYDRASGKSRGFGFVSFETAEDAESALESMNG 295
            GNL WG+   +L+E F  Q  ++ AKV+YDR SG+SRGFGFV++ ++++   A++S+NG
Sbjct: 241 VGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNG 283


HSP 2 Score: 72.0 bits (175), Expect = 1.3e-11
Identity = 33/87 (37.93%), Postives = 51/87 (58.62%), Query Frame = 1

Query: 219 KIYAGNLGWGLTSQSLREAFENQPGILSAKVIYDRASGKSRGFGFVSFETAEDAESALES 278
           K++ GNL + + S +L   FE    +   +VIYD+ +G+SRGFGFV+  T E+ E+A + 
Sbjct: 88  KLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQ 147

Query: 279 MNGVEVEGRPLRLNIAAGQALTSPAAF 306
            NG E++GR +R+N     A    ++F
Sbjct: 148 FNGYEIDGRAIRVNAGPAPAKRENSSF 174

BLAST of ClCG10G018230 vs. Swiss-Prot
Match: ROC2_NICPL (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 8.0e-41
Identity = 111/313 (35.46%), Postives = 169/313 (53.99%), Query Frame = 1

Query: 1   MSASSVSMAAATTATSVSSSSPFSKKLFFTQHPNQIPSHFSPKQNPLKLLNLRIHLPKLY 60
           M++SSVS   +     V+S +P S K      PN   S FS   + L L           
Sbjct: 1   MASSSVS---SLQFLFVTSQTPSSLK------PNSTLSFFSLPSSSLNL----------- 60

Query: 61  PLSFSSSSHLHCAPPAFDGLQVSDSETEYAEVQESYGEEETQEDEQKVSVSR--EAGKLY 120
             S SSSS  H A        +   E+ ++        ++ ++D +     R  E  KL+
Sbjct: 61  --SLSSSSIGHSA-------SIKPFESSFSTRVALSDFDQLEDDVEVAEQPRFSEDLKLF 120

Query: 121 VGNLPYAMTSSQLSEVFTEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDG 180
           VGNLP+++ S+ L+ +F  AG+V  V+VIYDK++ RSRGF FVTM+T EE + A + F+G
Sbjct: 121 VGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQFNG 180

Query: 181 SQIGGRTVRVNFPEVP-----------RGGEKEVMGPKIRSSY------NKFVDSPHKIY 240
            +I GR +RVN    P           RGG     G +  +S        + VDS +++Y
Sbjct: 181 YEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVY 240

Query: 241 AGNLGWGLTSQSLREAFENQPGILSAKVIYDRASGKSRGFGFVSFETAEDAESALESMNG 295
            GNL WG+   +L+E F  Q  ++ AKV+YDR SG+SRGFGFV++ +A++   A++S+NG
Sbjct: 241 VGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNG 284


HSP 2 Score: 72.8 bits (177), Expect = 7.8e-12
Identity = 34/87 (39.08%), Postives = 51/87 (58.62%), Query Frame = 1

Query: 219 KIYAGNLGWGLTSQSLREAFENQPGILSAKVIYDRASGKSRGFGFVSFETAEDAESALES 278
           K++ GNL + + S +L   FE    +   +VIYD+ SG+SRGFGFV+  T E+ E+A + 
Sbjct: 89  KLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQ 148

Query: 279 MNGVEVEGRPLRLNIAAGQALTSPAAF 306
            NG E++GR +R+N     A    ++F
Sbjct: 149 FNGYEIDGRAIRVNAGPAPAKRENSSF 175

BLAST of ClCG10G018230 vs. Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 4.0e-40
Identity = 95/261 (36.40%), Postives = 150/261 (57.47%), Query Frame = 1

Query: 47  LKLLNLRIHLPKLYPLSFSSSSHLHCAPPAFDGLQVSDSET-------------EYAEVQ 106
           L L    + LPK  P S ++S      PP+   L +S S +             ++ +++
Sbjct: 11  LSLTPQTLPLPK--PTSQTTSLSFFSLPPSSLNLSLSSSSSCFSSRFVRKVTLSDFDQIE 70

Query: 107 ESYGEEETQEDEQKVSVSREAGKLYVGNLPYAMTSSQLSEVFTEAGHVVSVQVIYDKVTD 166
           +    ++  E+E+  S      K++VGNLP++  S+ L+E+F  AG+V  V+VIYDK+T 
Sbjct: 71  DVEDGDDGVEEERNFSPDL---KIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTG 130

Query: 167 RSRGFAFVTMATLEEAKEAIRMFDGSQIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKF 226
           RSRGF FVTM++ EE + A + F+G ++ GR +RVN    P   E        R   +  
Sbjct: 131 RSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRGGSRGGGS-- 190

Query: 227 VDSPHKIYAGNLGWGLTSQSLREAFENQPGILSAKVIYDRASGKSRGFGFVSFETAEDAE 286
            DS +++Y GNL WG+   +L   F  Q  ++ AKV+YDR SG+SRGFGFV++ +AE+  
Sbjct: 191 FDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVN 250

Query: 287 SALESMNGVEVEGRPLRLNIA 295
           +A+ES++GV++ GR +R++ A
Sbjct: 251 NAIESLDGVDLNGRAIRVSPA 264

BLAST of ClCG10G018230 vs. TrEMBL
Match: A0A0A0LBL6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G782700 PE=4 SV=1)

HSP 1 Score: 552.7 bits (1423), Expect = 2.9e-154
Identity = 285/324 (87.96%), Postives = 295/324 (91.05%), Query Frame = 1

Query: 1   MSASSVSMAAATTATSVSSSSPFSKKLFFTQHPNQIPSHFSPKQNPLKLLNLRIHLPKLY 60
           MSA S+SMAAA  A +VSSS P   K FFTQHPNQIPSHFSPK N LKLLNL  H P  Y
Sbjct: 1   MSAYSLSMAAAAAAAAVSSS-PLYNKHFFTQHPNQIPSHFSPKHNQLKLLNLTFHSPNFY 60

Query: 61  PLSFSSSSHLHCAPPAFDGLQVSDSETEYAEVQESYGEEETQ-EDEQKVSVSREAGKLYV 120
           PLSFSS SHLHCAPPAFD L++SD ETEY  +QES GEEETQ EDEQKVSVSREAGKLY+
Sbjct: 61  PLSFSSVSHLHCAPPAFDELEISDPETEYGHIQESDGEEETQEEDEQKVSVSREAGKLYI 120

Query: 121 GNLPYAMTSSQLSEVFTEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGS 180
           GNLPYAMTSSQLSEVF EAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGS
Sbjct: 121 GNLPYAMTSSQLSEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGS 180

Query: 181 QIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLREAFE 240
           QIGGRTVRVNFPEVPRGGEKEVMGP+IRSSYNKFVDSPHKIYAGNLGWGLTSQSLR+AFE
Sbjct: 181 QIGGRTVRVNFPEVPRGGEKEVMGPRIRSSYNKFVDSPHKIYAGNLGWGLTSQSLRDAFE 240

Query: 241 NQPGILSAKVIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAAGQAL 300
           NQPGILSAK+IYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAAGQ+ 
Sbjct: 241 NQPGILSAKIIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAAGQSP 300

Query: 301 TSPAAFTRTENEIDSKELLTSISA 324
            SPAAF RTEN ID KELLTSISA
Sbjct: 301 ISPAAFPRTENTIDGKELLTSISA 323

BLAST of ClCG10G018230 vs. TrEMBL
Match: V4SRF4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012204mg PE=4 SV=1)

HSP 1 Score: 357.1 bits (915), Expect = 2.3e-95
Identity = 192/330 (58.18%), Postives = 240/330 (72.73%), Query Frame = 1

Query: 1   MSASSVSMAAATTATSVSSSSPFSKKLFFTQHPNQIPSHFSPK----QNPLKLLNLRIHL 60
           M+AS+VSMAA         SS    KL+  Q   QIP++  P     ++P  L   +   
Sbjct: 1   MAASTVSMAA---------SSSLCNKLYNLQAITQIPTNHLPSLFKTKSPKPLKLEKAQN 60

Query: 61  PKLYPLSFSSSSHLHCAPPAFDGLQVSDSETEYAEVQESYGEEET--QEDEQKVSVSREA 120
           P    LS  S SH      +FDG QV++   +  E ++   EEE   +E+E KV+ S EA
Sbjct: 61  PSALHLSLLSLSHFRQFSASFDGFQVTEDSQDEPETEQEEEEEEAVEEEEEPKVAASDEA 120

Query: 121 GKLYVGNLPYAMTSSQLSEVFTEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIR 180
            +LYVGNLPY+MTSS L+EVF EAG V S +++YD+VTDRSRGF FVTM ++EEAKEAIR
Sbjct: 121 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 180

Query: 181 MFDGSQIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSL 240
           +FDGSQIGGRTV+VNFPEVPRGGE+  MGPK+++SY  FVDSPHKIYAGNLGWGLTSQ L
Sbjct: 181 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 240

Query: 241 REAFENQPGILSAKVIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIA 300
           R+AF+ QPG+LSAKVI++R +G+SRGFGFV+FETAED +SAL++MNGVEVEGRPLRLN+A
Sbjct: 241 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMA 300

Query: 301 AGQA--LTSPAAFTRTENEIDSKELLTSIS 323
             +A  ++  A  T TEN ID  ELL+SIS
Sbjct: 301 NERAPPVSLAAKETNTENSIDGSELLSSIS 321

BLAST of ClCG10G018230 vs. TrEMBL
Match: A0A067FTD7_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g020607mg PE=4 SV=1)

HSP 1 Score: 354.4 bits (908), Expect = 1.5e-94
Identity = 191/331 (57.70%), Postives = 240/331 (72.51%), Query Frame = 1

Query: 1   MSASSVSMAAATTATSVSSSSPFSKKLFFTQHPNQIPSHFSPK----QNPLKLLNLRIHL 60
           M+AS+VSMAA         SS    KL+  Q   QIP++  P     ++P  L   +   
Sbjct: 1   MAASTVSMAA---------SSSLCNKLYNLQAITQIPTNHLPSLFKTKSPKPLKLEKAQN 60

Query: 61  PKLYPLSFSSSSHLHCAPPAFDGLQVSDSETEYAEVQESYGEEET---QEDEQKVSVSRE 120
           P    LS  S S+      +FDG QV++   +  E ++   EEE    +E+E KV+ S E
Sbjct: 61  PSALHLSLLSLSYFRQFSASFDGFQVTEDSQDEPETEQEEEEEEEAVEEEEEPKVAASDE 120

Query: 121 AGKLYVGNLPYAMTSSQLSEVFTEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAI 180
           A +LYVGNLPY+MTSS L+EVF EAG V S +++YD+VTDRSRGF FVTM ++EEAKEAI
Sbjct: 121 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 180

Query: 181 RMFDGSQIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQS 240
           R+FDGSQIGGRTV+VNFPEVPRGGE+  MGPK+++SY  FVDSPHKIYAGNLGWGLTSQ 
Sbjct: 181 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 240

Query: 241 LREAFENQPGILSAKVIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNI 300
           LR+AF+ QPG+LSAKVI++R +G+SRGFGFV+FETAED +SAL++MNGVEVEGRPLRLN+
Sbjct: 241 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNM 300

Query: 301 AAGQA--LTSPAAFTRTENEIDSKELLTSIS 323
           A  +A  +   A  T+TEN ID  ELL+SIS
Sbjct: 301 ANERAPPVLPAAKETKTENSIDGSELLSSIS 322

BLAST of ClCG10G018230 vs. TrEMBL
Match: A0A067KW74_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08743 PE=4 SV=1)

HSP 1 Score: 350.5 bits (898), Expect = 2.2e-93
Identity = 182/286 (63.64%), Postives = 228/286 (79.72%), Query Frame = 1

Query: 46  PLKLLNLRIHLPKLYPLSFSSSSHLHCAPPAFDGLQVS--DSETEYAEVQESYGEEETQE 105
           PLKLL L I      PLS SSSS    +  AFD  +VS  D ++E  E ++   EEE +E
Sbjct: 36  PLKLLKLYIQFRN--PLSLSSSSRFCPSFSAFDSTEVSQDDRQSETEEYEQELKEEEQEE 95

Query: 106 D------EQKVSVSREAGKLYVGNLPYAMTSSQLSEVFTEAGHVVSVQVIYDKVTDRSRG 165
           +      E K S S E G+L+VGNLPY+MTSSQL+EVF EAG VV+VQ+IYD+VTDRSRG
Sbjct: 96  EGEGEEEELKPSESNEEGRLFVGNLPYSMTSSQLTEVFQEAGQVVNVQIIYDRVTDRSRG 155

Query: 166 FAFVTMATLEEAKEAIRMFDGSQIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSP 225
           F FVTMA++E+AKEAIRMF+GSQIGGRTV+VN PEVP+GGE+EVMGP+IRS+Y  F+DSP
Sbjct: 156 FGFVTMASVEDAKEAIRMFNGSQIGGRTVKVNIPEVPKGGEREVMGPRIRSTYKGFIDSP 215

Query: 226 HKIYAGNLGWGLTSQSLREAFENQPGILSAKVIYDRASGKSRGFGFVSFETAEDAESALE 285
           HKIYAGNLGWGLTSQ LR+AF +QPG LSAKVIY+R +G+SRGFGF+SFE+AE+AE+AL 
Sbjct: 216 HKIYAGNLGWGLTSQGLRDAFASQPGFLSAKVIYERDTGRSRGFGFISFESAENAEAALN 275

Query: 286 SMNGVEVEGRPLRLNIAAGQALTSPAAFTRTENEIDSKELLTSISA 324
           +MNGVEVEGRPLRLN+AA +A + P+  T +E+ ++S EL++SI +
Sbjct: 276 AMNGVEVEGRPLRLNLAAERARSPPSMETNSEDNLESSELVSSIGS 319

BLAST of ClCG10G018230 vs. TrEMBL
Match: A0A059DJ66_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A02571 PE=4 SV=1)

HSP 1 Score: 350.1 bits (897), Expect = 2.8e-93
Identity = 196/338 (57.99%), Postives = 242/338 (71.60%), Query Frame = 1

Query: 1   MSASSVSMAAATTATSVSSSSPFSKKLFFTQHPNQIPSHFSPKQNPLKLLNLRIHLPKLY 60
           MS SS+SMAAA    S+   +P S  LF       +PSHF PK   L LL   + L    
Sbjct: 1   MSTSSLSMAAAAPP-SLGHKAP-SSALFLAPPRASLPSHFPPKPPALCLL---LALKSSA 60

Query: 61  PLSFSSS-SHLHCAPPAFDGLQVSDSET--------EYAEVQESYGEEETQEDEQKVSVS 120
           P+  S+          AFDG +  D           E  E+ ES GEEE + + +++   
Sbjct: 61  PVFGSAKLPRQPLLSAAFDGFEAEDGAAGSEEEDPEEAEELLESAGEEEEEGEGEEIGEE 120

Query: 121 REA-----GKLYVGNLPYAMTSSQLSEVFTEAGHVVSVQVIYDKVTDRSRGFAFVTMATL 180
           +       G+LYVGNLPY+M SSQL+EVF EAG V++V+V+YD+VTDRSRGFAFVTM ++
Sbjct: 121 KRVSGSSGGRLYVGNLPYSMNSSQLAEVFEEAGRVINVEVVYDRVTDRSRGFAFVTMGSV 180

Query: 181 EEAKEAIRMFDGSQIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLG 240
           EEA+EAIRMFDGSQ+GGRTV+VNFPEVP+GGE+EVMGP+IR+S   FVDSPHK+YAGNLG
Sbjct: 181 EEAQEAIRMFDGSQVGGRTVKVNFPEVPKGGEREVMGPRIRNSNRGFVDSPHKLYAGNLG 240

Query: 241 WGLTSQSLREAFENQPGILSAKVIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEG 300
           WGLTS+ LR+AF NQPG+LSAKVIYDR SGKSRGFGF+SFE+AE  ESAL++MNGVEVEG
Sbjct: 241 WGLTSEGLRDAFANQPGLLSAKVIYDRNSGKSRGFGFISFESAEAVESALDAMNGVEVEG 300

Query: 301 RPLRLNIAAGQALTSPAAFTR-TENEIDSKELLTSISA 324
           RPLRLN+AA +A  SPA+  R   N +DS ELL+SIS+
Sbjct: 301 RPLRLNLAADRA--SPASLNRNAANNLDSSELLSSISS 331

BLAST of ClCG10G018230 vs. TAIR10
Match: AT3G52380.1 (AT3G52380.1 chloroplast RNA-binding protein 33)

HSP 1 Score: 316.2 bits (809), Expect = 2.3e-86
Identity = 175/337 (51.93%), Postives = 229/337 (67.95%), Query Frame = 1

Query: 1   MSASSVSMAAATTATSVSSSSPFSKKLFFTQHPNQIPSHFSPKQ--------NPLKL-LN 60
           MS++  S A A +A + +SS+     L  +   +Q+   F+PK         NPL L  N
Sbjct: 1   MSSAYCSSAVAVSAAATASSAATFNPLLSSHSNSQLFYRFTPKSFKLVANCPNPLILHSN 60

Query: 61  LRIHLPKLYPLSFSSSSHLHCAPPAFDGLQVSDSETEYAEVQESYGEEETQEDEQKVSVS 120
           +R H        F  ++    A  A D +Q S  E E  E +   GEEE +E++Q    S
Sbjct: 61  IRRH-------RFFCAAETE-ASSADDEIQASVEEEEEVEEEGDEGEEEVEEEKQTTQAS 120

Query: 121 REAGKLYVGNLPYAMTSSQLSEVFTEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKE 180
            E G+LYVGNLPY +TSS+LS++F EAG VV VQ++YDKVTDRSRGF FVTM ++EEAKE
Sbjct: 121 GEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKE 180

Query: 181 AIRMFDGSQIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTS 240
           A++MF+ SQIGGRTV+VNFPEVPRGGE EVM  KIR +   +VDSPHK+YAGNLGW LTS
Sbjct: 181 AMQMFNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNLTS 240

Query: 241 QSLREAFENQPGILSAKVIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRL 300
           Q L++AF +QPG+L AKVIY+R +G+SRGFGF+SFE+AE+ +SAL +MNGVEVEGR LRL
Sbjct: 241 QGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRALRL 300

Query: 301 NIAA--GQALTSPAAFTRTENE---IDSKELLTSISA 324
           N+A+   +   SP +    E E   ++S E+L+++SA
Sbjct: 301 NLASEREKPTVSPPSVEEGETEEASLESNEVLSNVSA 329

BLAST of ClCG10G018230 vs. TAIR10
Match: AT2G37220.1 (AT2G37220.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 156.8 bits (395), Expect = 2.3e-38
Identity = 84/220 (38.18%), Postives = 135/220 (61.36%), Query Frame = 1

Query: 87  TEYAEVQESYGEEETQEDEQKVSVSREAGKLYVGNLPYAMTSSQLSEVFTEAGHVVSVQV 146
           T   EV+E    +     EQ  S      KL+VGNLP+ + S+QL+++F  AG+V  V+V
Sbjct: 66  TSEFEVEEDGFADVAPPKEQSFSADL---KLFVGNLPFNVDSAQLAQLFESAGNVEMVEV 125

Query: 147 IYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQIGGRTVRVNF-PEVPRGGEKEVMGPK 206
           IYDK+T RSRGF FVTM+++ E + A + F+G ++ GR +RVN  P  P+  +    GP 
Sbjct: 126 IYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFSRGP- 185

Query: 207 IRSSYNKF-----------VDSPHKIYAGNLGWGLTSQSLREAFENQPGILSAKVIYDRA 266
            RSS+                S +++Y GNL WG+   +L   F  Q  ++ A+VIYDR 
Sbjct: 186 -RSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRD 245

Query: 267 SGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIA 295
           SG+S+GFGFV+++++++ ++A++S++G +++GR +R++ A
Sbjct: 246 SGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEA 280

BLAST of ClCG10G018230 vs. TAIR10
Match: AT1G60000.1 (AT1G60000.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 146.7 bits (369), Expect = 2.4e-35
Identity = 74/203 (36.45%), Postives = 125/203 (61.58%), Query Frame = 1

Query: 98  EEETQEDEQKVSVSREAG---KLYVGNLPYAMTSSQLSEVFTEAGHVVSVQVIYDKVTDR 157
           EEE ++D     +   A    KLY GNLPY + S+ L+++  +  +   V+V+Y++ T +
Sbjct: 65  EEEEKDDGASAVLDPPAAVNTKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQ 124

Query: 158 SRGFAFVTMATLEEAKEAIRMFDGSQIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFV 217
           SRGFAFVTM+ +E+    I   DG++  GR ++VNF + P+  ++ +           + 
Sbjct: 125 SRGFAFVTMSNVEDCNIIIDNLDGTEYLGRALKVNFADKPKPNKEPL-----------YP 184

Query: 218 DSPHKIYAGNLGWGLTSQSLREAFENQPGILSAKVIYDRASGKSRGFGFVSFETAEDAES 277
           ++ HK++ GNL W +TS+SL  AF     ++ A+V++D  +G+SRG+GFV + +  + E+
Sbjct: 185 ETEHKLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMET 244

Query: 278 ALESMNGVEVEGRPLRLNIAAGQ 298
           ALES++G E+EGR +R+N+A G+
Sbjct: 245 ALESLDGFELEGRAIRVNLAQGK 256


HSP 2 Score: 58.2 bits (139), Expect = 1.1e-08
Identity = 28/94 (29.79%), Postives = 50/94 (53.19%), Query Frame = 1

Query: 219 KIYAGNLGWGLTSQSLREAFENQPGILSAKVIYDRASGKSRGFGFVSFETAEDAESALES 278
           K+Y GNL + + S +L +  ++       +V+Y+R +G+SRGF FV+    ED    +++
Sbjct: 86  KLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIIDN 145

Query: 279 MNGVEVEGRPLRLNIAAGQALTSPAAFTRTENEI 313
           ++G E  GR L++N A          +  TE+++
Sbjct: 146 LDGTEYLGRALKVNFADKPKPNKEPLYPETEHKL 179

BLAST of ClCG10G018230 vs. TAIR10
Match: AT4G24770.1 (AT4G24770.1 31-kDa RNA binding protein)

HSP 1 Score: 142.1 bits (357), Expect = 5.9e-34
Identity = 106/336 (31.55%), Postives = 168/336 (50.00%), Query Frame = 1

Query: 1   MSASSVSMAAATTATSVSSSSPFSKKLFFTQHPNQIPSHFSP---KQNPLKLLNLRIHLP 60
           M++S V+ +    A + SSSS          HP+ I S  S    + + + LL  RI+LP
Sbjct: 1   MASSIVTSSLKPLAMADSSSSTIFS------HPS-ISSTISSSRIRSSSVSLLTGRINLP 60

Query: 61  KLYP---LSFSSSSHLHCAPPAFDGLQVSD------------SETE-------YAEVQES 120
             +    LS  + +HL  +P      Q SD             ETE        +E  ES
Sbjct: 61  LSFSRVSLSLKTKTHLKKSPFVSFVAQTSDWAEEGGEGSVAVEETENSLESQDVSEGDES 120

Query: 121 YGE---------EETQEDEQKVSVSREA--------GKLYVGNLPYAMTSSQLSEVFTEA 180
            G+         +E++ D  + +VS  A         KL+VGNL Y + S  L+ +F +A
Sbjct: 121 EGDASEGDVSEGDESEGDVSEGAVSERAEFPEPSEEAKLFVGNLAYDVNSQALAMLFEQA 180

Query: 181 GHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQIGGRTVRVNFPEVPRGGE 240
           G V   +VIY++ TD+SRGF FVTM++++EA+ A+  F+   + GR + VN    PRG  
Sbjct: 181 GTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVN-KAAPRGSR 240

Query: 241 KEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLREAFENQPGILSAKVIYDRASGKS 295
            E   P++        +   ++Y GNL W + +  L + F     ++ A+V+YDR +G+S
Sbjct: 241 PE-RAPRV-------YEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRS 300

BLAST of ClCG10G018230 vs. TAIR10
Match: AT3G52150.1 (AT3G52150.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 142.1 bits (357), Expect = 5.9e-34
Identity = 75/200 (37.50%), Postives = 118/200 (59.00%), Query Frame = 1

Query: 96  YGEEETQEDEQKVSVSREAGK-LYVGNLPYAMTSSQLSEVFTEAGHVVSVQVIYDKVTDR 155
           Y   ET+E    +  S EA + +Y+GN+P  +T+ QL+++  E G V  VQV+YDK + R
Sbjct: 56  YAVTETEEKPAALDPSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGR 115

Query: 156 SRGFAFVTMATLEEAKEAIRMFDGSQIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFV 215
           SR F F TM ++E+A   +   +G+ + GR ++VN  E P     ++    ++S  + FV
Sbjct: 116 SRRFGFATMKSVEDANAVVEKLNGNTVEGREIKVNITEKPIASSPDL--SVLQSEDSAFV 175

Query: 216 DSPHKIYAGNLGWGLTSQSLREAFENQPGILSAKVIYDRASGKSRGFGFVSFETAEDAES 275
           DSP+K+Y GNL   +T + L   F  +  ++SAKV     + KS GFGFV+F + ED E+
Sbjct: 176 DSPYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEA 235

Query: 276 ALESMNGVEVEGRPLRLNIA 295
           A+ ++N   +EG+ +R+N A
Sbjct: 236 AIVALNNSLLEGQKIRVNKA 253

BLAST of ClCG10G018230 vs. NCBI nr
Match: gi|778684506|ref|XP_004136521.2| (PREDICTED: 33 kDa ribonucleoprotein, chloroplastic [Cucumis sativus])

HSP 1 Score: 552.7 bits (1423), Expect = 4.1e-154
Identity = 285/324 (87.96%), Postives = 295/324 (91.05%), Query Frame = 1

Query: 1   MSASSVSMAAATTATSVSSSSPFSKKLFFTQHPNQIPSHFSPKQNPLKLLNLRIHLPKLY 60
           MSA S+SMAAA  A +VSSS P   K FFTQHPNQIPSHFSPK N LKLLNL  H P  Y
Sbjct: 1   MSAYSLSMAAAAAAAAVSSS-PLYNKHFFTQHPNQIPSHFSPKHNQLKLLNLTFHSPNFY 60

Query: 61  PLSFSSSSHLHCAPPAFDGLQVSDSETEYAEVQESYGEEETQ-EDEQKVSVSREAGKLYV 120
           PLSFSS SHLHCAPPAFD L++SD ETEY  +QES GEEETQ EDEQKVSVSREAGKLY+
Sbjct: 61  PLSFSSVSHLHCAPPAFDELEISDPETEYGHIQESDGEEETQEEDEQKVSVSREAGKLYI 120

Query: 121 GNLPYAMTSSQLSEVFTEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGS 180
           GNLPYAMTSSQLSEVF EAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGS
Sbjct: 121 GNLPYAMTSSQLSEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGS 180

Query: 181 QIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLREAFE 240
           QIGGRTVRVNFPEVPRGGEKEVMGP+IRSSYNKFVDSPHKIYAGNLGWGLTSQSLR+AFE
Sbjct: 181 QIGGRTVRVNFPEVPRGGEKEVMGPRIRSSYNKFVDSPHKIYAGNLGWGLTSQSLRDAFE 240

Query: 241 NQPGILSAKVIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAAGQAL 300
           NQPGILSAK+IYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAAGQ+ 
Sbjct: 241 NQPGILSAKIIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAAGQSP 300

Query: 301 TSPAAFTRTENEIDSKELLTSISA 324
            SPAAF RTEN ID KELLTSISA
Sbjct: 301 ISPAAFPRTENTIDGKELLTSISA 323

BLAST of ClCG10G018230 vs. NCBI nr
Match: gi|659084517|ref|XP_008442930.1| (PREDICTED: 33 kDa ribonucleoprotein, chloroplastic isoform X2 [Cucumis melo])

HSP 1 Score: 550.4 bits (1417), Expect = 2.0e-153
Identity = 284/321 (88.47%), Postives = 296/321 (92.21%), Query Frame = 1

Query: 4   SSVSMAAATTATSVSSSSPFSKKLFFTQHPNQIPSHFSPKQNPLKLLNLRIHLPKLYPLS 63
           S+ S+AAA  A S +SSSP  KK FFTQHPNQIPSHFSPK N LKLLNL IHLP  YPLS
Sbjct: 2   SAYSLAAAAAAAS-ASSSPLYKKHFFTQHPNQIPSHFSPKHNKLKLLNLTIHLPNFYPLS 61

Query: 64  FSSSSHLHCAPPAFDGLQVSDSETEYAEVQESYGEEETQ-EDEQKVSVSREAGKLYVGNL 123
           FSS SH+HCAPPAFD L++SD ETEY +VQES GEE+TQ EDEQK+SVSREAGKLY+GNL
Sbjct: 62  FSSVSHIHCAPPAFDELEISDPETEYGDVQESDGEEQTQEEDEQKISVSREAGKLYIGNL 121

Query: 124 PYAMTSSQLSEVFTEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQIG 183
           PYAMTSSQLSEVF EAG VVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQIG
Sbjct: 122 PYAMTSSQLSEVFAEAGQVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQIG 181

Query: 184 GRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLREAFENQP 243
           GRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLR+AFENQP
Sbjct: 182 GRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLRDAFENQP 241

Query: 244 GILSAKVIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAAGQALTSP 303
           GILSAKVIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAA +A TSP
Sbjct: 242 GILSAKVIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAAERAPTSP 301

Query: 304 AAFTRTENEIDSKELLTSISA 324
           AAF RTEN IDSKELLTSISA
Sbjct: 302 AAFPRTENTIDSKELLTSISA 321

BLAST of ClCG10G018230 vs. NCBI nr
Match: gi|659084515|ref|XP_008442929.1| (PREDICTED: 33 kDa ribonucleoprotein, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 486.9 bits (1252), Expect = 2.8e-134
Identity = 248/280 (88.57%), Postives = 259/280 (92.50%), Query Frame = 1

Query: 4   SSVSMAAATTATSVSSSSPFSKKLFFTQHPNQIPSHFSPKQNPLKLLNLRIHLPKLYPLS 63
           S+ S+AAA  A S +SSSP  KK FFTQHPNQIPSHFSPK N LKLLNL IHLP  YPLS
Sbjct: 2   SAYSLAAAAAAAS-ASSSPLYKKHFFTQHPNQIPSHFSPKHNKLKLLNLTIHLPNFYPLS 61

Query: 64  FSSSSHLHCAPPAFDGLQVSDSETEYAEVQESYGEEETQ-EDEQKVSVSREAGKLYVGNL 123
           FSS SH+HCAPPAFD L++SD ETEY +VQES GEE+TQ EDEQK+SVSREAGKLY+GNL
Sbjct: 62  FSSVSHIHCAPPAFDELEISDPETEYGDVQESDGEEQTQEEDEQKISVSREAGKLYIGNL 121

Query: 124 PYAMTSSQLSEVFTEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQIG 183
           PYAMTSSQLSEVF EAG VVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQIG
Sbjct: 122 PYAMTSSQLSEVFAEAGQVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQIG 181

Query: 184 GRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLREAFENQP 243
           GRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLR+AFENQP
Sbjct: 182 GRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLRDAFENQP 241

Query: 244 GILSAKVIYDRASGKSRGFGFVSFETAEDAESALESMNGV 283
           GILSAKVIYDRASGKSRGFGFVSFETAEDAESALESMNGV
Sbjct: 242 GILSAKVIYDRASGKSRGFGFVSFETAEDAESALESMNGV 280

BLAST of ClCG10G018230 vs. NCBI nr
Match: gi|659084515|ref|XP_008442929.1| (PREDICTED: 33 kDa ribonucleoprotein, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 68.2 bits (165), Expect = 3.1e-08
Identity = 30/74 (40.54%), Postives = 48/74 (64.86%), Query Frame = 1

Query: 219 KIYAGNLGWGLTSQSLREAFENQPGILSAKVIYDRASGKSRGFGFVSFETAEDAESALES 278
           K+Y GNL + +TS  L E F     ++S +VIYD+ + +SRGF FV+  T E+A+ A+  
Sbjct: 114 KLYIGNLPYAMTSSQLSEVFAEAGQVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRM 173

Query: 279 MNGVEVEGRPLRLN 293
            +G ++ GR +R+N
Sbjct: 174 FDGSQIGGRTVRVN 187


HSP 2 Score: 357.5 bits (916), Expect = 2.5e-95
Identity = 193/327 (59.02%), Postives = 241/327 (73.70%), Query Frame = 1

Query: 1   MSASSVSMAAATTATSVSSSSPFSKKLFFTQHPNQIPSHFSP-KQNPLKLLNLRIHLPKL 60
           MSASS+S+AAA   TS       S  L  T   + +  HF P K NP+K L+        
Sbjct: 1   MSASSLSVAAAAIGTS-------SHYLSSTTINDHLSLHFFPCKANPVKSLSKIRTCLSY 60

Query: 61  YPLSFSSSSHLHCAPPAFDGLQVSDSETEYAEVQESYGEE--ETQEDEQKVSVSREAGKL 120
            P SF S S ++C   AFD ++++  E E  E++ S  E   E +E+E  VS S EAG+L
Sbjct: 61  SPFSFHSRSSIYCVSSAFDSVELNQEEVE-EELESSIQETVTEAEEEENGVSPSAEAGRL 120

Query: 121 YVGNLPYAMTSSQLSEVFTEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFD 180
           YVGNLP++MTSSQLSE+F EAG V SV+++YD+VTDRSRGFAFVTM ++EEAKEAIR+FD
Sbjct: 121 YVGNLPFSMTSSQLSEIFAEAGRVASVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLFD 180

Query: 181 GSQIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLREA 240
           G+QIGGRT +VNFPEVPRGGE+EVM PKIRSS   FVDSPHKIYAGNL WGLTSQ+LREA
Sbjct: 181 GAQIGGRTAKVNFPEVPRGGEREVMTPKIRSSSQGFVDSPHKIYAGNLSWGLTSQALREA 240

Query: 241 FENQPGILSAKVIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAAGQ 300
           F  QPG LSAKVIYDR SG+SRGFGF++F +AE+ +SAL +MNGVEVEGRPLRLN+A  +
Sbjct: 241 FAEQPGFLSAKVIYDRDSGRSRGFGFITFTSAEEVQSALNAMNGVEVEGRPLRLNLAEQR 300

Query: 301 ALTS--PAAFTRTENEIDSKELLTSIS 323
           A  S  PA    +E ++++ E+L+S+S
Sbjct: 301 APASPPPAVENTSETDVENSEMLSSVS 319

BLAST of ClCG10G018230 vs. NCBI nr
Match: gi|567874915|ref|XP_006430047.1| (hypothetical protein CICLE_v10012204mg [Citrus clementina])

HSP 1 Score: 357.1 bits (915), Expect = 3.3e-95
Identity = 192/330 (58.18%), Postives = 240/330 (72.73%), Query Frame = 1

Query: 1   MSASSVSMAAATTATSVSSSSPFSKKLFFTQHPNQIPSHFSPK----QNPLKLLNLRIHL 60
           M+AS+VSMAA         SS    KL+  Q   QIP++  P     ++P  L   +   
Sbjct: 1   MAASTVSMAA---------SSSLCNKLYNLQAITQIPTNHLPSLFKTKSPKPLKLEKAQN 60

Query: 61  PKLYPLSFSSSSHLHCAPPAFDGLQVSDSETEYAEVQESYGEEET--QEDEQKVSVSREA 120
           P    LS  S SH      +FDG QV++   +  E ++   EEE   +E+E KV+ S EA
Sbjct: 61  PSALHLSLLSLSHFRQFSASFDGFQVTEDSQDEPETEQEEEEEEAVEEEEEPKVAASDEA 120

Query: 121 GKLYVGNLPYAMTSSQLSEVFTEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIR 180
            +LYVGNLPY+MTSS L+EVF EAG V S +++YD+VTDRSRGF FVTM ++EEAKEAIR
Sbjct: 121 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 180

Query: 181 MFDGSQIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSL 240
           +FDGSQIGGRTV+VNFPEVPRGGE+  MGPK+++SY  FVDSPHKIYAGNLGWGLTSQ L
Sbjct: 181 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 240

Query: 241 REAFENQPGILSAKVIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIA 300
           R+AF+ QPG+LSAKVI++R +G+SRGFGFV+FETAED +SAL++MNGVEVEGRPLRLN+A
Sbjct: 241 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMA 300

Query: 301 AGQA--LTSPAAFTRTENEIDSKELLTSIS 323
             +A  ++  A  T TEN ID  ELL+SIS
Sbjct: 301 NERAPPVSLAAKETNTENSIDGSELLSSIS 321

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
ROC5_NICSY2.5e-8753.8033 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1[more]
CP33_ARATH4.1e-8551.93RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana GN=CP33 PE=2 SV=... [more]
ROC2_NICSY4.7e-4135.7829 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1[more]
ROC2_NICPL8.0e-4135.4631 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1[more]
ROC1_NICSY4.0e-4036.4029 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0LBL6_CUCSA2.9e-15487.96Uncharacterized protein OS=Cucumis sativus GN=Csa_3G782700 PE=4 SV=1[more]
V4SRF4_9ROSI2.3e-9558.18Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012204mg PE=4 SV=1[more]
A0A067FTD7_CITSI1.5e-9457.70Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g020607mg PE=4 SV=1[more]
A0A067KW74_JATCU2.2e-9363.64Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08743 PE=4 SV=1[more]
A0A059DJ66_EUCGR2.8e-9357.99Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A02571 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT3G52380.12.3e-8651.93 chloroplast RNA-binding protein 33[more]
AT2G37220.12.3e-3838.18 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT1G60000.12.4e-3536.45 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT4G24770.15.9e-3431.55 31-kDa RNA binding protein[more]
AT3G52150.15.9e-3437.50 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
Match NameE-valueIdentityDescription
gi|778684506|ref|XP_004136521.2|4.1e-15487.96PREDICTED: 33 kDa ribonucleoprotein, chloroplastic [Cucumis sativus][more]
gi|659084517|ref|XP_008442930.1|2.0e-15388.47PREDICTED: 33 kDa ribonucleoprotein, chloroplastic isoform X2 [Cucumis melo][more]
gi|659084515|ref|XP_008442929.1|2.8e-13488.57PREDICTED: 33 kDa ribonucleoprotein, chloroplastic isoform X1 [Cucumis melo][more]
gi|659084515|ref|XP_008442929.1|3.1e-0840.54PREDICTED: 33 kDa ribonucleoprotein, chloroplastic isoform X1 [Cucumis melo][more]
gi|567874915|ref|XP_006430047.1|3.3e-9558.18hypothetical protein CICLE_v10012204mg [Citrus clementina][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0000166nucleotide binding
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0031425 chloroplast RNA processing
biological_process GO:0008150 biological_process
biological_process GO:1901259 chloroplast rRNA processing
cellular_component GO:0009507 chloroplast
cellular_component GO:0030529 intracellular ribonucleoprotein complex
cellular_component GO:0019013 viral nucleocapsid
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0009579 thylakoid
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0003729 mRNA binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG10G018230.1ClCG10G018230.1mRNA


Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 117..187
score: 2.0E-21coord: 220..290
score: 1.4
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 219..292
score: 4.9E-26coord: 116..189
score: 7.4
IPR000504RNA recognition motif domainPROFILEPS50102RRMcoord: 218..296
score: 18.973coord: 115..193
score: 19
IPR012677Nucleotide-binding alpha-beta plait domainGENE3DG3DSA:3.30.70.330coord: 214..296
score: 3.8E-25coord: 102..194
score: 2.2
IPR012677Nucleotide-binding alpha-beta plait domainunknownSSF54928RNA-binding domain, RBDcoord: 115..296
score: 6.11
NoneNo IPR availablePANTHERPTHR24012FAMILY NOT NAMEDcoord: 88..201
score: 6.8E-54coord: 217..294
score: 6.8

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None