Cucsa.213550 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.213550
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	At2g28430/T1B3.5
Location	scaffold01543 : 1340653 .. 1341796 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCCCTTCACCATCTTTCCCCAGAAAAACCTTTCTTTATTTCTTTCTCCGACGGAAATCAAGCCGTGAAGCTTTATGTCACCATGATTTCCGTTCTTGCTCAGGTAACCTACCGTCTATGCTCGTATGAATTTCCGAGCTGATTCGATTTCCATGCCGTCTCTTTCAATACGATTTGATCTCACTGTCTTTTCCTTTTGGGTTGATATCCCAAATTGAACTGCAGGAACGACTGCTTGGTTTTGCATTGGGGAGCGTGTTCGCCGGGGTTGTTGTTTTTGAGCAACGGAAAAGCTTATACCAATCCATTTCCGAAAACTATCCACCAGCTACCCAATCTCCAGTAAGCGTAATTCCCCTTTCTTGTAACCCTAACGATAACCATTGTTTTGAGACAGTTAGGATGGCATTGCATTGAAAAATGTATGAAAATGTACGTCTTTGAATATTTGGATGTTTGGGTTTAAGGGGGAGAAGAGAATGGAATTATCAAAATTTTCGATAATGCAATTGTTAAACTAGTGTTATACATGTCTGAAAAGTGTATTAACCTATAAATTATGTGCTTTTTTTGTGTGCTTACTTTGTTATATCTATATAAATATTTTTTTGAAGATATATCAATATTAATTCATGCTAATTTTTTTTTCTATTTCAAAATTGAGAAATACATATCTTGTGAAAGATGTATAATTCCTTTTCTGAATTTTATACTTCCATCTAGCTGCTAATCCGTTAATTTAATATCATTCTCTTTGAAACTACTTTAGATGAGAAAACCTGTGCTAGCAAAGAAGTATGGCCCAGAGTTTTCACACCTATGGAATAGAGCTGTAGACCAGACGTTTGGACCCGTGATTCAGGCACTCAGTTCACGGGGATGGTGATATGTTGAGAATGGTTTCTTTCATCAATGTGTCTAATATCAATTTGTGAAACATGTAAGGAAACAGAATTTTAAATTACTAGTTTTAACATTCTGGATTATCAAAGAATTTATGTTATGTCCGTGAATCAAACTCCAGAGCCATGAGCTTTAGGCCTTTAAAGCAATAAAACTGCTCTTTTTCTTAATTCCTTTTTCCCTATGTATTTCATTGAGAAGTCATGTGGTTAAATTGTTAACATACTATTGTGGGGAGTGA

mRNA sequence

CTCCCTTCACCATCTTTCCCCAGAAAAACCTTTCTTTATTTCTTTCTCCGACGGAAATCAAGCCGTGAAGCTTTATGTCACCATGATTTCCGTTCTTGCTCAGGAACGACTGCTTGGTTTTGCATTGGGGAGCGTGTTCGCCGGGGTTGTTGTTTTTGAGCAACGGAAAAGCTTATACCAATCCATTTCCGAAAACTATCCACCAGCTACCCAATCTCCAGTAAGCATGAGAAAACCTGTGCTAGCAAAGAAGTATGGCCCAGAGTTTTCACACCTATGGAATAGAGCTGTAGACCAGACGTTTGGACCCGTGATTCAGGCACTCAGTTCACGGGGATGGTGATATGTTGAGAATGGTTTCTTTCATCAATGTGTCTAATATCAATTTGTGAAACATGTAAGGAAACAGAATTTTAAATTACTAGTTTTAACATTCTGGATTATCAAAGAATTTATGTTATGTCCGTGAATCAAACTCCAGAGCCATGAGCTTTAGGCCTTTAAAGCAATAAAACTGCTCTTTTTCTTAATTCCTTTTTCCCTATGTATTTCATTGAGAAGTCATGTGGTTAAATTGTTAACATACTATTGTGGGGAGTGA

Coding sequence (CDS)

ATGATTTCCGTTCTTGCTCAGGAACGACTGCTTGGTTTTGCATTGGGGAGCGTGTTCGCCGGGGTTGTTGTTTTTGAGCAACGGAAAAGCTTATACCAATCCATTTCCGAAAACTATCCACCAGCTACCCAATCTCCAGTAAGCATGAGAAAACCTGTGCTAGCAAAGAAGTATGGCCCAGAGTTTTCACACCTATGGAATAGAGCTGTAGACCAGACGTTTGGACCCGTGATTCAGGCACTCAGTTCACGGGGATGGTGA

Protein sequence

MISVLAQERLLGFALGSVFAGVVVFEQRKSLYQSISENYPPATQSPVSMRKPVLAKKYGPEFSHLWNRAVDQTFGPVIQALSSRGW*

Homology

[Close]

BLAST of Cucsa.213550 vs. TrEMBL
Match: A0A0A0LXB2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G495270 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 2.0e-38
Identity = 84/86 (97.67%), Postives = 84/86 (97.67%), Query Frame = 1


Query: 1   MISVLAQERLLGFALGSVFAGVVVFEQRKSLYQSISENYPPATQSPVSMRKPVLAKKYGP 60
           MISVLAQERLLGFALGSVFAGVVVFEQRKSLYQSISENYPPATQSP  MRKPVLAKKYGP
Sbjct: 54  MISVLAQERLLGFALGSVFAGVVVFEQRKSLYQSISENYPPATQSP--MRKPVLAKKYGP 113

Query: 61  EFSHLWNRAVDQTFGPVIQALSSRGW 87
           EFSHLWNRAVDQTFGPVIQALSSRGW
Sbjct: 114 EFSHLWNRAVDQTFGPVIQALSSRGW 137

[Close]

BLAST of Cucsa.213550 vs. TrEMBL
Match: A0A067GCR9_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034751mg PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 8.6e-21
Identity = 54/86 (62.79%), Postives = 65/86 (75.58%), Query Frame = 1


Query: 1  MISVLAQERLLGFALGSVFAGVVVFEQRKSLYQSISENYPPATQSPVSMRKPVLAKKYGP 60
          MISVLAQERLLGFALGS   G VVFEQRK +Y SIS+ +    +     R+P+ A+K   
Sbjct: 1  MISVLAQERLLGFALGSAITGFVVFEQRKCIYGSISD-HQSHDEIKSQTREPIFARKTRS 60

Query: 61 EFSHLWNRAVDQTFGPVIQALSSRGW 87
          EF+HLWN+AVDQTFGPVI++ SSRGW
Sbjct: 61 EFAHLWNKAVDQTFGPVIESFSSRGW 85

[Close]

BLAST of Cucsa.213550 vs. TrEMBL
Match: V4UES1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029701mg PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 8.6e-21
Identity = 54/86 (62.79%), Postives = 65/86 (75.58%), Query Frame = 1


Query: 1  MISVLAQERLLGFALGSVFAGVVVFEQRKSLYQSISENYPPATQSPVSMRKPVLAKKYGP 60
          MISVLAQERLLGFALGS   G VVFEQRK +Y SIS+ +    +     R+P+ A+K   
Sbjct: 1  MISVLAQERLLGFALGSAITGFVVFEQRKCIYGSISD-HQSHDEIKSQTREPIFARKTRS 60

Query: 61 EFSHLWNRAVDQTFGPVIQALSSRGW 87
          EF+HLWN+AVDQTFGPVI++ SSRGW
Sbjct: 61 EFAHLWNKAVDQTFGPVIESFSSRGW 85

[Close]

BLAST of Cucsa.213550 vs. TrEMBL
Match: D7SKY4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g02870 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 9.5e-20
Identity = 53/87 (60.92%), Postives = 67/87 (77.01%), Query Frame = 1


Query: 1  MISVLAQERLLGFALGSVFAGVVVFEQRKSLYQSISENYPPATQSPVSMR-KPVLAKKYG 60
          MISVLAQERLLG ALGS+F GV+VFEQRK +Y+SI++    +   P S++ +P+  KK  
Sbjct: 1  MISVLAQERLLGAALGSIFTGVIVFEQRKCIYKSIADT--QSQLDPQSLKTEPIFGKKSR 60

Query: 61 PEFSHLWNRAVDQTFGPVIQALSSRGW 87
           EF+HLWN+ VD+T GPVI ALSSRGW
Sbjct: 61 LEFAHLWNKTVDKTLGPVIAALSSRGW 85

[Close]

BLAST of Cucsa.213550 vs. TrEMBL
Match: M5W4P9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014126mg PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.2e-19
Identity = 53/87 (60.92%), Postives = 65/87 (74.71%), Query Frame = 1


Query: 1  MISVLAQERLLGFALGSVFAGVVVFEQRKSLYQSIS-ENYPPATQSPVSMRKPVLAKKYG 60
          MIS+LAQERLLG ALGS+F G+VVFEQR+ +Y SIS       TQS +  R+P+   K  
Sbjct: 1  MISILAQERLLGAALGSIFTGIVVFEQRRCIYNSISGTKSQSVTQSQI--REPIFGSKSR 60

Query: 61 PEFSHLWNRAVDQTFGPVIQALSSRGW 87
           EF+HLWN+AVDQTF PVI++LSS GW
Sbjct: 61 AEFAHLWNKAVDQTFRPVIESLSSSGW 85

[Close]

BLAST of Cucsa.213550 vs. TAIR10
Match: AT2G28430.1 (AT2G28430.1 unknown protein)

HSP 1 Score: 90.5 bits (223), Expect = 5.5e-19
Identity = 47/88 (53.41%), Postives = 60/88 (68.18%), Query Frame = 1


Query: 1  MISVLAQERLLGFALGSVFAGVVVFEQRKSLYQSISENYPPATQS--PVSMRKPVLAKKY 60
          MIS+LAQERLLG+ LGS   G +VFEQRK ++ S+S+   P +QS     +   +  KKY
Sbjct: 1  MISILAQERLLGYTLGSALTGFIVFEQRKLIHDSVSD---PKSQSIDQAQVSDRIFGKKY 60

Query: 61 GPEFSHLWNRAVDQTFGPVIQALSSRGW 87
            EF+ LWN+AVDQTF P I+ LSSR W
Sbjct: 61 RMEFASLWNKAVDQTFEPAIEYLSSRKW 85

[Close]

BLAST of Cucsa.213550 vs. NCBI nr
Match: gi|778661363|ref|XP_011657967.1| (PREDICTED: uncharacterized protein LOC101206005 isoform X1 [Cucumis sativus])

HSP 1 Score: 174.1 bits (440), Expect = 1.1e-40
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 1


Query: 1  MISVLAQERLLGFALGSVFAGVVVFEQRKSLYQSISENYPPATQSPVSMRKPVLAKKYGP 60
          MISVLAQERLLGFALGSVFAGVVVFEQRKSLYQSISENYPPATQSPVSMRKPVLAKKYGP
Sbjct: 1  MISVLAQERLLGFALGSVFAGVVVFEQRKSLYQSISENYPPATQSPVSMRKPVLAKKYGP 60

Query: 61 EFSHLWNRAVDQTFGPVIQALSSRGW 87
          EFSHLWNRAVDQTFGPVIQALSSRGW
Sbjct: 61 EFSHLWNRAVDQTFGPVIQALSSRGW 86

[Close]

BLAST of Cucsa.213550 vs. NCBI nr
Match: gi|659115375|ref|XP_008457525.1| (PREDICTED: uncharacterized protein LOC103497197 isoform X1 [Cucumis melo])

HSP 1 Score: 171.4 bits (433), Expect = 6.9e-40
Identity = 84/86 (97.67%), Postives = 85/86 (98.84%), Query Frame = 1


Query: 1  MISVLAQERLLGFALGSVFAGVVVFEQRKSLYQSISENYPPATQSPVSMRKPVLAKKYGP 60
          MISVLAQERLLGFALGS FAGVVVFEQRKSLYQSISENYPPATQSPVSMRKPVLAKKYGP
Sbjct: 1  MISVLAQERLLGFALGSAFAGVVVFEQRKSLYQSISENYPPATQSPVSMRKPVLAKKYGP 60

Query: 61 EFSHLWNRAVDQTFGPVIQALSSRGW 87
          EFSHLWNRAVDQTFGP+IQALSSRGW
Sbjct: 61 EFSHLWNRAVDQTFGPMIQALSSRGW 86

[Close]

BLAST of Cucsa.213550 vs. NCBI nr
Match: gi|449470380|ref|XP_004152895.1| (PREDICTED: uncharacterized protein LOC101206005 isoform X2 [Cucumis sativus])

HSP 1 Score: 166.0 bits (419), Expect = 2.9e-38
Identity = 84/86 (97.67%), Postives = 84/86 (97.67%), Query Frame = 1


Query: 1  MISVLAQERLLGFALGSVFAGVVVFEQRKSLYQSISENYPPATQSPVSMRKPVLAKKYGP 60
          MISVLAQERLLGFALGSVFAGVVVFEQRKSLYQSISENYPPATQSP  MRKPVLAKKYGP
Sbjct: 1  MISVLAQERLLGFALGSVFAGVVVFEQRKSLYQSISENYPPATQSP--MRKPVLAKKYGP 60

Query: 61 EFSHLWNRAVDQTFGPVIQALSSRGW 87
          EFSHLWNRAVDQTFGPVIQALSSRGW
Sbjct: 61 EFSHLWNRAVDQTFGPVIQALSSRGW 84

[Close]

BLAST of Cucsa.213550 vs. NCBI nr
Match: gi|700210583|gb|KGN65679.1| (hypothetical protein Csa_1G495270 [Cucumis sativus])

HSP 1 Score: 166.0 bits (419), Expect = 2.9e-38
Identity = 84/86 (97.67%), Postives = 84/86 (97.67%), Query Frame = 1


Query: 1   MISVLAQERLLGFALGSVFAGVVVFEQRKSLYQSISENYPPATQSPVSMRKPVLAKKYGP 60
           MISVLAQERLLGFALGSVFAGVVVFEQRKSLYQSISENYPPATQSP  MRKPVLAKKYGP
Sbjct: 54  MISVLAQERLLGFALGSVFAGVVVFEQRKSLYQSISENYPPATQSP--MRKPVLAKKYGP 113

Query: 61  EFSHLWNRAVDQTFGPVIQALSSRGW 87
           EFSHLWNRAVDQTFGPVIQALSSRGW
Sbjct: 114 EFSHLWNRAVDQTFGPVIQALSSRGW 137

[Close]

BLAST of Cucsa.213550 vs. NCBI nr
Match: gi|659115377|ref|XP_008457526.1| (PREDICTED: uncharacterized protein LOC103497197 isoform X2 [Cucumis melo])

HSP 1 Score: 163.3 bits (412), Expect = 1.9e-37
Identity = 82/86 (95.35%), Postives = 83/86 (96.51%), Query Frame = 1


Query: 1  MISVLAQERLLGFALGSVFAGVVVFEQRKSLYQSISENYPPATQSPVSMRKPVLAKKYGP 60
          MISVLAQERLLGFALGS FAGVVVFEQRKSLYQSISENYPPATQSP  MRKPVLAKKYGP
Sbjct: 1  MISVLAQERLLGFALGSAFAGVVVFEQRKSLYQSISENYPPATQSP--MRKPVLAKKYGP 60

Query: 61 EFSHLWNRAVDQTFGPVIQALSSRGW 87
          EFSHLWNRAVDQTFGP+IQALSSRGW
Sbjct: 61 EFSHLWNRAVDQTFGPMIQALSSRGW 84

The following BLAST results are available for this feature:

BLAST of Cucsa.213550 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LXB2_CUCSA	2.0e-38	97.67	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G495270 PE=4 SV=1	[more]
A0A067GCR9_CITSI	8.6e-21	62.79	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034751mg PE=4 SV=1	[more]
V4UES1_9ROSI	8.6e-21	62.79	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029701mg PE=4 SV=1	[more]
D7SKY4_VITVI	9.5e-20	60.92	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g02870 PE=4 SV=...	[more]
M5W4P9_PRUPE	1.2e-19	60.92	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014126mg PE=4 SV=1	[more]

BLAST of Cucsa.213550 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G28430.1	5.5e-19	53.41	unknown protein	[more]

BLAST of Cucsa.213550 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778661363\|ref\|XP_011657967.1\|	1.1e-40	100.00	PREDICTED: uncharacterized protein LOC101206005 isoform X1 [Cucumis sativus]	[more]
gi\|659115375\|ref\|XP_008457525.1\|	6.9e-40	97.67	PREDICTED: uncharacterized protein LOC103497197 isoform X1 [Cucumis melo]	[more]
gi\|449470380\|ref\|XP_004152895.1\|	2.9e-38	97.67	PREDICTED: uncharacterized protein LOC101206005 isoform X2 [Cucumis sativus]	[more]
gi\|700210583\|gb\|KGN65679.1\|	2.9e-38	97.67	hypothetical protein Csa_1G495270 [Cucumis sativus]	[more]
gi\|659115377\|ref\|XP_008457526.1\|	1.9e-37	95.35	PREDICTED: uncharacterized protein LOC103497197 isoform X2 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.213550.1	Cucsa.213550.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37720	FAMILY NOT NAMED	coord: 1..86 score: 3.4
None	No IPR available	PANTHER	PTHR37720:SF1	SUBFAMILY NOT NAMED	coord: 1..86 score: 3.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.213550	Cla008274	Watermelon (97103) v1	cgywmB409
Cucsa.213550	Csa1G495270	Cucumber (Chinese Long) v2	cgycuB315
Cucsa.213550	MELO3C020691	Melon (DHL92) v3.5.1	cgymeB376
Cucsa.213550	ClCG03G001830	Watermelon (Charleston Gray)	cgywcgB389
Cucsa.213550	CSPI01G22570	Wild cucumber (PI 183967)	cgycpiB328
Cucsa.213550	CmaCh13G001510	Cucurbita maxima (Rimu)	cgycmaB0613
Cucsa.213550	CmaCh01G005740	Cucurbita maxima (Rimu)	cgycmaB0615
Cucsa.213550	CmoCh01G006000	Cucurbita moschata (Rifu)	cgycmoB0617
Cucsa.213550	CmoCh13G001550	Cucurbita moschata (Rifu)	cgycmoB0615
Cucsa.213550	Lsi02G013860	Bottle gourd (USVL1VR-Ls)	cgylsiB359
Cucsa.213550	Cp4.1LG20g08700	Cucurbita pepo (Zucchini)	cgycpeB0589
Cucsa.213550	Cp4.1LG02g13140	Cucurbita pepo (Zucchini)	cgycpeB0591
Cucsa.213550	MELO3C020691.2	Melon (DHL92) v3.6.1	cgymedB374
Cucsa.213550	CsaV3_1G033740	Cucumber (Chinese Long) v3	cgycucB333
Cucsa.213550	Cla97C03G052830	Watermelon (97103) v2	cgywmbB391
Cucsa.213550	Carg12346	Silver-seed gourd	carcgyB0512
Cucsa.213550	Carg21027	Silver-seed gourd	carcgyB0819

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.213550	Bottle gourd (USVL1VR-Ls)	cgylsiB356
Cucsa.213550	Melon (DHL92) v3.6.1	cgymedB372
Cucsa.213550	Silver-seed gourd	carcgyB0360
Cucsa.213550	Silver-seed gourd	carcgyB0361
Cucsa.213550	Watermelon (97103) v2	cgywmbB388
Cucsa.213550	Wax gourd	cgywgoB436
Cucsa.213550	Cucurbita maxima (Rimu)	cgycmaB0617
Cucsa.213550	Cucurbita moschata (Rifu)	cgycmoB0618
Cucsa.213550	Watermelon (Charleston Gray)	cgywcgB385
Cucsa.213550	Watermelon (Charleston Gray)	cgywcgB386
Cucsa.213550	Watermelon (97103) v1	cgywmB412
Cucsa.213550	Watermelon (97103) v1	cgywmB414