Carg12346 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg12346
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Zinc finger, C3HC4 type family protein
Location	Cucurbita_argyrosperma_scaffold_074 : 428153 .. 429388 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTTCCATTCTTGCTCAGGTAACCAAGCATCCATGCTCCGATGGACTTCCAGAGCTAATTCGATTTCCTTGCCATTTATTGGGTGCAATTTGATCTCATTTTCTTCTCCTTTTTGGTGGAAATCTGGATCCAATTGCAGGAGCGACTTCTTGGTGCTGCACTGGGCAGCGTATTCGTCGGGGTTGTTGTTTTTGAGCAGCGGAAAAGCATATACAGATCCATTTCGGAAAATTATCCGCCAGCCACCCAATCTCCGGTATGTTTAAAATTTCCCTTTCTGTTACCCTAATGATTAACTTTTTATGGCTTGTGTTTGAACATTGTGAAAATGTAATGAAATTATCAAATGTATGTGTATGAATATTTGAATGATTGGGAATAAGGGGAGAGCGTAATGAAATTATCAAAATTTTCAATAATGTCATTCAGGTTAATAATTTGGAAGTAGTTTTTCTTTTTTTACATTTTTGACGTTGATCTTAATCTAAACATGGCTTGATGTGTATAATTTTTATGTCTTTCTTTATATCAATTAATTTATGATAAGTTATATTTCTTTTAATATAAAACTGAAATATACATTATCTGAATACTGTAAAATCAATTTTTCTACACACGAGTTTAATTCATCATAGAAAAATATAAAGTTTTGTATAAGAATGTGTTCTTCACTTCATTTGTGAAGGTTTAGATTGTAAAAGACCAATGGAGGACCATGGGTATCAAGAAAATTCGTTATTTGCTGTCATTTTAGATGTCTAGGCATGCTGCATTTTGATGGTAGAAATCTGAGTGGCTACTCCTTGGACATTATCTTTGTTAATTCAAAGCAGAAGGTTTTTTTTCCTTCTAACAAGAAACGTCTCAGAATTAGTAACTATATGGCACCTGATTTTTTTCCATCTGGGAGTGGTGAGTATTGAATAATGTGGACTGTCAGGGTTTATGTATTTGGAAGGAATTATTGATATTATTATTTAATCTAAACTTTGTTCTTGCCCCACAAGTTCTCTTACCAACAATGTAGAATTCCCTAATGCAAGTTCTACCATCTCTGAATTTATGCTTCCATCTAGCAGCTAACCCATTAATCTAATATCATCCTCTTTGAAACGACTTTAGATGAAAAAAGCTGTATTAGCAAAGAAATATGGCCCAGAGATTTCGCACCTATGGAATAGAGCTGTAGACCAGACATTTGGACCTGTGATTCAGGCTCTCAGTTCACGGGGA

mRNA sequence

ATGATTTCCATTCTTGCTCAGGAGCGACTTCTTGGTGCTGCACTGGGCAGCGTATTCGTCGGGGTTGTTGTTTTTGAGCAGCGGAAAAGCATATACAGATCCATTTCGGAAAATTATCCGCCAGCCACCCAATCTCCGATGAAAAAAGCTGTATTAGCAAAGAAATATGGCCCAGAGATTTCGCACCTATGGAATAGAGCTGTAGACCAGACATTTGGACCTGTGATTCAGGCTCTCAGTTCACGGGGA

Coding sequence (CDS)

ATGATTTCCATTCTTGCTCAGGAGCGACTTCTTGGTGCTGCACTGGGCAGCGTATTCGTCGGGGTTGTTGTTTTTGAGCAGCGGAAAAGCATATACAGATCCATTTCGGAAAATTATCCGCCAGCCACCCAATCTCCGATGAAAAAAGCTGTATTAGCAAAGAAATATGGCCCAGAGATTTCGCACCTATGGAATAGAGCTGTAGACCAGACATTTGGACCTGTGATTCAGGCTCTCAGTTCACGGGGA

Protein sequence

MISILAQERLLGAALGSVFVGVVVFEQRKSIYRSISENYPPATQSPMKKAVLAKKYGPEISHLWNRAVDQTFGPVIQALSSRG

Homology

[Close]

BLAST of Carg12346 vs. NCBI nr
Match: XP_022156577.1 (uncharacterized protein LOC111023455 [Momordica charantia])

HSP 1 Score: 154.1 bits (388), Expect = 2.1e-34
Identity = 75/83 (90.36%), Postives = 80/83 (96.39%), Query Frame = 0


Query: 1  MISILAQERLLGAALGSVFVGVVVFEQRKSIYRSISENYPPATQSPMKKAVLAKKYGPEI 60
          MISILAQERLLGAALGSVF GVVVFEQRKS+YRSISENYPPA QSPM+K V+AKKYGPE+
Sbjct: 1  MISILAQERLLGAALGSVFAGVVVFEQRKSLYRSISENYPPANQSPMRKPVVAKKYGPEV 60

Query: 61 SHLWNRAVDQTFGPVIQALSSRG 84
          SHLWNRAVDQTFGP+IQALSSRG
Sbjct: 61 SHLWNRAVDQTFGPMIQALSSRG 83

[Close]

BLAST of Carg12346 vs. NCBI nr
Match: XP_004152895.1 (PREDICTED: uncharacterized protein LOC101206005 isoform X2 [Cucumis sativus])

HSP 1 Score: 152.9 bits (385), Expect = 4.7e-34
Identity = 75/83 (90.36%), Postives = 79/83 (95.18%), Query Frame = 0


Query: 1  MISILAQERLLGAALGSVFVGVVVFEQRKSIYRSISENYPPATQSPMKKAVLAKKYGPEI 60
          MIS+LAQERLLG ALGSVF GVVVFEQRKS+Y+SISENYPPATQSPM+K VLAKKYGPE 
Sbjct: 1  MISVLAQERLLGFALGSVFAGVVVFEQRKSLYQSISENYPPATQSPMRKPVLAKKYGPEF 60

Query: 61 SHLWNRAVDQTFGPVIQALSSRG 84
          SHLWNRAVDQTFGPVIQALSSRG
Sbjct: 61 SHLWNRAVDQTFGPVIQALSSRG 83

[Close]

BLAST of Carg12346 vs. NCBI nr
Match: KGN65679.1 (hypothetical protein Csa_1G495270 [Cucumis sativus])

HSP 1 Score: 152.9 bits (385), Expect = 4.7e-34
Identity = 75/83 (90.36%), Postives = 79/83 (95.18%), Query Frame = 0


Query: 1   MISILAQERLLGAALGSVFVGVVVFEQRKSIYRSISENYPPATQSPMKKAVLAKKYGPEI 60
           MIS+LAQERLLG ALGSVF GVVVFEQRKS+Y+SISENYPPATQSPM+K VLAKKYGPE 
Sbjct: 54  MISVLAQERLLGFALGSVFAGVVVFEQRKSLYQSISENYPPATQSPMRKPVLAKKYGPEF 113

Query: 61  SHLWNRAVDQTFGPVIQALSSRG 84
           SHLWNRAVDQTFGPVIQALSSRG
Sbjct: 114 SHLWNRAVDQTFGPVIQALSSRG 136

[Close]

BLAST of Carg12346 vs. NCBI nr
Match: XP_022964845.1 (uncharacterized protein LOC111464826 [Cucurbita moschata])

HSP 1 Score: 150.6 bits (379), Expect = 2.4e-33
Identity = 75/83 (90.36%), Postives = 77/83 (92.77%), Query Frame = 0


Query: 1  MISILAQERLLGAALGSVFVGVVVFEQRKSIYRSISENYPPATQSPMKKAVLAKKYGPEI 60
          MISILAQERLLGAALGSVF GVVVFEQRKSIY SIS+NYPP TQSPM+K VLAKKYGPE 
Sbjct: 1  MISILAQERLLGAALGSVFAGVVVFEQRKSIYNSISKNYPPTTQSPMRKPVLAKKYGPEF 60

Query: 61 SHLWNRAVDQTFGPVIQALSSRG 84
          SHLWN AVDQTFGPVIQALSSRG
Sbjct: 61 SHLWNSAVDQTFGPVIQALSSRG 83

[Close]

BLAST of Carg12346 vs. NCBI nr
Match: XP_008457526.1 (PREDICTED: uncharacterized protein LOC103497197 isoform X2 [Cucumis melo])

HSP 1 Score: 150.2 bits (378), Expect = 3.1e-33
Identity = 73/83 (87.95%), Postives = 78/83 (93.98%), Query Frame = 0


Query: 1  MISILAQERLLGAALGSVFVGVVVFEQRKSIYRSISENYPPATQSPMKKAVLAKKYGPEI 60
          MIS+LAQERLLG ALGS F GVVVFEQRKS+Y+SISENYPPATQSPM+K VLAKKYGPE 
Sbjct: 1  MISVLAQERLLGFALGSAFAGVVVFEQRKSLYQSISENYPPATQSPMRKPVLAKKYGPEF 60

Query: 61 SHLWNRAVDQTFGPVIQALSSRG 84
          SHLWNRAVDQTFGP+IQALSSRG
Sbjct: 61 SHLWNRAVDQTFGPMIQALSSRG 83

[Close]

BLAST of Carg12346 vs. TAIR10
Match: AT2G28430.1 (unknown protein)

HSP 1 Score: 83.6 bits (205), Expect = 6.4e-17
Identity = 45/83 (54.22%), Postives = 55/83 (66.27%), Query Frame = 0


Query: 1  MISILAQERLLGAALGSVFVGVVVFEQRKSIYRSISE-NYPPATQSPMKKAVLAKKYGPE 60
          MISILAQERLLG  LGS   G +VFEQRK I+ S+S+       Q+ +   +  KKY  E
Sbjct: 1  MISILAQERLLGYTLGSALTGFIVFEQRKLIHDSVSDPKSQSIDQAQVSDRIFGKKYRME 60

Query: 61 ISHLWNRAVDQTFGPVIQALSSR 83
           + LWN+AVDQTF P I+ LSSR
Sbjct: 61 FASLWNKAVDQTFEPAIEYLSSR 83

[Close]

BLAST of Carg12346 vs. TrEMBL
Match: tr|A0A0A0LXB2|A0A0A0LXB2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G495270 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 3.1e-34
Identity = 75/83 (90.36%), Postives = 79/83 (95.18%), Query Frame = 0


Query: 1   MISILAQERLLGAALGSVFVGVVVFEQRKSIYRSISENYPPATQSPMKKAVLAKKYGPEI 60
           MIS+LAQERLLG ALGSVF GVVVFEQRKS+Y+SISENYPPATQSPM+K VLAKKYGPE 
Sbjct: 54  MISVLAQERLLGFALGSVFAGVVVFEQRKSLYQSISENYPPATQSPMRKPVLAKKYGPEF 113

Query: 61  SHLWNRAVDQTFGPVIQALSSRG 84
           SHLWNRAVDQTFGPVIQALSSRG
Sbjct: 114 SHLWNRAVDQTFGPVIQALSSRG 136

[Close]

BLAST of Carg12346 vs. TrEMBL
Match: tr|A0A1S3C5P6|A0A1S3C5P6_CUCME (uncharacterized protein LOC103497197 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103497197 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 2.0e-33
Identity = 73/83 (87.95%), Postives = 78/83 (93.98%), Query Frame = 0


Query: 1  MISILAQERLLGAALGSVFVGVVVFEQRKSIYRSISENYPPATQSPMKKAVLAKKYGPEI 60
          MIS+LAQERLLG ALGS F GVVVFEQRKS+Y+SISENYPPATQSPM+K VLAKKYGPE 
Sbjct: 1  MISVLAQERLLGFALGSAFAGVVVFEQRKSLYQSISENYPPATQSPMRKPVLAKKYGPEF 60

Query: 61 SHLWNRAVDQTFGPVIQALSSRG 84
          SHLWNRAVDQTFGP+IQALSSRG
Sbjct: 61 SHLWNRAVDQTFGPMIQALSSRG 83

[Close]

BLAST of Carg12346 vs. TrEMBL
Match: tr|A0A1S3C5V0|A0A1S3C5V0_CUCME (uncharacterized protein LOC103497197 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103497197 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 6.5e-32
Identity = 73/85 (85.88%), Postives = 78/85 (91.76%), Query Frame = 0


Query: 1  MISILAQERLLGAALGSVFVGVVVFEQRKSIYRSISENYPPATQSP--MKKAVLAKKYGP 60
          MIS+LAQERLLG ALGS F GVVVFEQRKS+Y+SISENYPPATQSP  M+K VLAKKYGP
Sbjct: 1  MISVLAQERLLGFALGSAFAGVVVFEQRKSLYQSISENYPPATQSPVSMRKPVLAKKYGP 60

Query: 61 EISHLWNRAVDQTFGPVIQALSSRG 84
          E SHLWNRAVDQTFGP+IQALSSRG
Sbjct: 61 EFSHLWNRAVDQTFGPMIQALSSRG 85

[Close]

BLAST of Carg12346 vs. TrEMBL
Match: tr|A0A1U7ZP93|A0A1U7ZP93_NELNU (uncharacterized protein LOC104594850 OS=Nelumbo nucifera OX=4432 GN=LOC104594850 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 4.7e-22
Identity = 58/84 (69.05%), Postives = 67/84 (79.76%), Query Frame = 0


Query: 1  MISILAQERLLGAALGSVFVGVVVFEQRKSIYRSISEN-YPPATQSPMKKAVLAKKYGPE 60
          MIS+LAQER LGAALGS+F GVVVFEQR+SIY SISEN + P  QS M++  L KKY  E
Sbjct: 1  MISVLAQERFLGAALGSIFTGVVVFEQRRSIYSSISENQFQPKPQSQMEERKLGKKYRLE 60

Query: 61 ISHLWNRAVDQTFGPVIQALSSRG 84
           +HLWN+AVDQT GP+I  LSSRG
Sbjct: 61 FTHLWNKAVDQTMGPMIAFLSSRG 84

[Close]

BLAST of Carg12346 vs. TrEMBL
Match: tr|A0A2N9HWL4|A0A2N9HWL4_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS44005 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 5.2e-21
Identity = 53/84 (63.10%), Postives = 68/84 (80.95%), Query Frame = 0


Query: 1  MISILAQERLLGAALGSVFVGVVVFEQRKSIYRSISENY-PPATQSPMKKAVLAKKYGPE 60
          M+S+LAQERLLGAALGS+  G+VVFEQRKSIY+SIS+N    AT   M++ +  K+   E
Sbjct: 1  MVSVLAQERLLGAALGSILTGIVVFEQRKSIYKSISDNQSQSATHPQMREPIFGKRSRSE 60

Query: 61 ISHLWNRAVDQTFGPVIQALSSRG 84
          ++HLWN+AVD+TFGPVI +LSSRG
Sbjct: 61 LAHLWNKAVDRTFGPVIDSLSSRG 84

The following BLAST results are available for this feature:

BLAST of Carg12346 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022156577.1	2.1e-34	90.36	uncharacterized protein LOC111023455 [Momordica charantia]	[more]
XP_004152895.1	4.7e-34	90.36	PREDICTED: uncharacterized protein LOC101206005 isoform X2 [Cucumis sativus]	[more]
KGN65679.1	4.7e-34	90.36	hypothetical protein Csa_1G495270 [Cucumis sativus]	[more]
XP_022964845.1	2.4e-33	90.36	uncharacterized protein LOC111464826 [Cucurbita moschata]	[more]
XP_008457526.1	3.1e-33	87.95	PREDICTED: uncharacterized protein LOC103497197 isoform X2 [Cucumis melo]	[more]

BLAST of Carg12346 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G28430.1	6.4e-17	54.22	unknown protein	[more]

BLAST of Carg12346 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg12346 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LXB2\|A0A0A0LXB2_CUCSA	3.1e-34	90.36	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G495270 PE=4 SV=1	[more]
tr\|A0A1S3C5P6\|A0A1S3C5P6_CUCME	2.0e-33	87.95	uncharacterized protein LOC103497197 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A1S3C5V0\|A0A1S3C5V0_CUCME	6.5e-32	85.88	uncharacterized protein LOC103497197 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A1U7ZP93\|A0A1U7ZP93_NELNU	4.7e-22	69.05	uncharacterized protein LOC104594850 OS=Nelumbo nucifera OX=4432 GN=LOC104594850...	[more]
tr\|A0A2N9HWL4\|A0A2N9HWL4_FAGSY	5.2e-21	63.10	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS44005 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg12346-RA	Carg12346-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37720	FAMILY NOT NAMED	coord: 1..83

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg12346	Cla008274	Watermelon (97103) v1	carwmB0440
Carg12346	Csa1G495270	Cucumber (Chinese Long) v2	carcuB0471
Carg12346	MELO3C020691	Melon (DHL92) v3.5.1	carmeB0449
Carg12346	ClCG03G001830	Watermelon (Charleston Gray)	carwcgB0436
Carg12346	CSPI01G22570	Wild cucumber (PI 183967)	carcpiB0476
Carg12346	Cucsa.213550	Cucumber (Gy14) v1	carcgyB0512
Carg12346	CmaCh13G001510	Cucurbita maxima (Rimu)	carcmaB0610
Carg12346	Lsi02G013860	Bottle gourd (USVL1VR-Ls)	carlsiB403
Carg12346	Cp4.1LG02g13140	Cucurbita pepo (Zucchini)	carcpeB0622
Carg12346	Cp4.1LG20g08700	Cucurbita pepo (Zucchini)	carcpeB0620
Carg12346	CsGy1G022140	Cucumber (Gy14) v2	carcgybB0448
Carg12346	MELO3C020691.2	Melon (DHL92) v3.6.1	carmedB0451
Carg12346	CsaV3_1G033740	Cucumber (Chinese Long) v3	carcucB0472
Carg12346	Cla97C03G052830	Watermelon (97103) v2	carwmbB0467

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg12346	Carg21027	Silver-seed gourd	carcarB447

The following block(s) are covering this gene:


Gene	Organism	Block
Carg12346	Silver-seed gourd	carcarB332
Carg12346	Silver-seed gourd	carcarB333
Carg12346	Silver-seed gourd	carcarB353
Carg12346	Silver-seed gourd	carcarB354
Carg12346	Cucumber (Gy14) v2	carcgybB0452
Carg12346	Cucumber (Gy14) v2	carcgybB0454
Carg12346	Cucurbita maxima (Rimu)	carcmaB0613
Carg12346	Cucurbita maxima (Rimu)	carcmaB0614
Carg12346	Cucurbita maxima (Rimu)	carcmaB0615
Carg12346	Cucurbita maxima (Rimu)	carcmaB0616
Carg12346	Cucurbita moschata (Rifu)	carcmoB0594
Carg12346	Cucurbita moschata (Rifu)	carcmoB0596
Carg12346	Cucurbita moschata (Rifu)	carcmoB0597
Carg12346	Cucurbita moschata (Rifu)	carcmoB0598
Carg12346	Cucurbita moschata (Rifu)	carcmoB0599
Carg12346	Cucurbita pepo (Zucchini)	carcpeB0617
Carg12346	Cucurbita pepo (Zucchini)	carcpeB0618
Carg12346	Cucurbita pepo (Zucchini)	carcpeB0619
Carg12346	Cucurbita pepo (Zucchini)	carcpeB0624
Carg12346	Cucurbita pepo (Zucchini)	carcpeB0625
Carg12346	Wild cucumber (PI 183967)	carcpiB0480
Carg12346	Cucumber (Chinese Long) v2	carcuB0476
Carg12346	Cucumber (Chinese Long) v3	carcucB0478
Carg12346	Melon (DHL92) v3.5.1	carmeB0446
Carg12346	Bottle gourd (USVL1VR-Ls)	carlsiB400
Carg12346	Bottle gourd (USVL1VR-Ls)	carlsiB401
Carg12346	Bottle gourd (USVL1VR-Ls)	carlsiB405
Carg12346	Melon (DHL92) v3.6.1	carmedB0448
Carg12346	Watermelon (Charleston Gray)	carwcgB0433
Carg12346	Watermelon (Charleston Gray)	carwcgB0435
Carg12346	Watermelon (97103) v1	carwmB0441
Carg12346	Watermelon (97103) v1	carwmB0442
Carg12346	Watermelon (97103) v1	carwmB0444
Carg12346	Watermelon (97103) v2	carwmbB0464
Carg12346	Wax gourd	carwgoB0529
Carg12346	Wax gourd	carwgoB0530