Cucsa.209350 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.209350
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Ribosomal RNA processing protein 1 B, putative
Location	scaffold01466 : 73160 .. 75906 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAAGCTCATCTAGGGTTCTCTCTCAACGCGAACAGGGGAGACCAAAAATCTCCTACCGCCGCCGTTCCGCCTTCTGGGAATTGGGAAATTCCGATTTCATCATATTCAATCGTTTTCCCTCGTACTCATATCCTATTTCAATCCAATTTACCTTTTTtGTTTTGATTTCTTTTCCTCTCCCTTTCTAACTCTGATACCGAACGATCGAGGTTTTTTCGTGAAAGAAAATGGAGGAGGTTGTTGAAGGAGATCAGAATTTCACTTCATTAGTCAAGCTTTTGGCGTCCTCCAACAAGGCGACTCGAGACAAGACCCTTCGTGTAATCATCAAGACATGGCTTCCAACTCAAACGAGCCTTTCCGATGGCGATATGAAAAAGCTTTGGAAGGGTTTGTTCTACTGTGTTTGGCACGCCGACAAGGTTCCTGTTCAATCTGAGCTTATTAATCGTCTTGCTTCTCTGCTCCTCCATCTCGACCTATCGTTAGCTGTTCAGTACTTCTCTGTTTTTCTTCTCACTATGCGTCGTGAATGGGCCGGGATTGATGCGCTCAGGTTAGATAAGTTTTATCTTTTGATTCGTAGGTTTTTGCACCAGTTTTTTGCTTTGTTGAAGAAGCATTCTTGGGATTTGGAACTGTGTCGTCGTTTGGTTCAAGTTTTGGAGGAAAGGGTGTATTTTAATGAGGATAAGTTTCATGGGAATGGTGTTAATTATCAAATTGCTTCTGTGTTTCTTGAGGAACTTAGGCCGTTTCTTCCTCTTCAGAAGGAAGTTGTTGATGTCCTGTTCAAGCCTTTCCTTCTTTCAATGACTAAACTGCCTGATAAAGTGTTGTTGGGAAAAATTAAGTCCAATCTTTTTGATGTGATACTGAAAAAGGGGAAGCAGTTACTCGAGAGTCGAAAACGTGGAGATGATGTTGATTCGGTTGATGATACGGTTGTGTATGGGACAGTTTCCTTGACAAATCAATTCTCAACAACATTTTATGAATTGGGTTCTTCACCTGATTGCTGTCAAGGGAATAGAAAGGTATTGTTTGCCATGCACGAAGAGTTTCAGAAGTTGGAGAAAGATTTTTTCTCATCAGGGATTGAGATTTCGTTTCCAGATCTTCAAGAGCAAGATGGGGATGAAGTGCCTACTTTGGTTCCTATTTCAAGTATAGAAGAGGCTCCTTCGGAAATTTCCCTGGTTGATGTTGATGTGGGTACTGAATCCACTGATAAGGCACTTAAGAAGCAAAAAAaGAGTAAAAAGGCCACTGATGGAAGTGGCAAGAAGAAGGCTAAGAAGGCTAAGAAGGCAAAGAAGACCACAAACGGTATTTCTGATCTTGTTTCTGAAAATACTCCTGCGAATAAGGACAATGAGAATATAGTTGTTGCTAACGGTGAGAATTCTAATAATGAACAGATTAGTGATGGAAATATGATAACCTTTGATGAAACTGTTATATCAAACCTTCAGATGCAATTTGAGAGGGTTGCTGCTGAAGCTGATTTTGGAAAAAGTACTGTAAGTCCTGTAATATCAACCAATGGCTCAGTCAAGAAAaGAAAGAGAGCAAAGAATGTTGGTGAACTGCAGAAACATGATGCAGGACTTCCTAGTGAAGCCGTGGCTGAAGGAAATACAGCTGCAAAAAGCGAAGAGAAGAGTGTTAAGAAGGTAAGGTTTTCAATGAAAAATAACTTGGTTTGGAAACCCCATAATCCTTTACCACCTGAAAGTTTGAGGCTGCCTCCCTCTGTTACTCCAAGGGgAAGTGCACTTAAGAAAGGAATACCTCCAGGTCCTATCTTGGAATTCCCTGCTACAACAAAGAGGACAAAAAGGAGGGCGGTCTCAATGAGGACTAAGAATGGTGTAAGAAGCTTGCCTGTCAAACGTTTGAAGAAATTGAAATCTAAGAGTACTTAGATGCTTTTTGTCTTAGGGTATGAAGTTGCAGAGGTCCAAAGCTTACAGATTTTAATCATTTAATGATTGTCTTAATTACTTCATTTCATTTGGGCGTTGTTCTCACATTGACTTTCATGATCTCAACCGTTTAAAGAGAATGATGATTCTGATGCATCGAGTTGATGATATTTGAAATTGATGCCCTCATGGAATTCTAGCTTAAATGATCAAATTTTCTCTTGGCATTTCATTTTGGTTTTATCTTCCTGGTCCTTTTTCTTTTCTTTTTCCTTAGAGTTCTTGTAGTACAAGGCGGTGGGAGGTGGGAGAAGACGGTTTTGCAGCATAAATGAGTGAGAGGTAGTGTAGAATTTTGGCAGTGTAATGGTTGCTGTTTGTACTTTTTCTTTTGTTTAGTACTTGGTGCCTTTGTAGTTTAGTAGAAAAGGTTCTGTCTTTGGTAAAAACTGGTTGGCCTATGCTACTTGAATGCACCAAATAGTGGTTATAGCTTATAAGTTCGACTATTGAAATATGAGAAGAAGAGCTGGAAATGATTAAAGTTCCTCGGTTCCTAATTATTTCAAGCTGTTTTTTGCACTAGTTTTTCCTTGCAGAATACCATATGATTTGCTCCTAGCCAACTATTGAGATGGTTATAAGGCAAAAACATTTTTGTTTCTCTGTTACAAGTATTCATCTGCAATATTGCATCTTCATTTTCTCATTTTCATTGGTTATGGTTATCTTTATACTGTACAGAATGAACAGCACTGTATACTGCCAAATGTATTAGGGGTGATCCAAATCGATCTGTAGAGGGAGAATTGGCTGGA

mRNA sequence

CAAAGCTCATCTAGGGTTCTCTCTCAACGCGAACAGGGGAGACCAAAAATCTCCTACCGCCGCCGTTCCGCCTTCTGGGAATTGGGAAATTCCGATTTCATCATATTCAATCGTTTTCCCTCGTACTCATATCCTATTTCAATCCAATTTACCTTTTTTGTTTTGATTTCTTTTCCTCTCCCTTTCTAACTCTGATACCGAACGATCGAGGTTTTTTCGTGAAAGAAAATGGAGGAGGTTGTTGAAGGAGATCAGAATTTCACTTCATTAGTCAAGCTTTTGGCGTCCTCCAACAAGGCGACTCGAGACAAGACCCTTCGTGTAATCATCAAGACATGGCTTCCAACTCAAACGAGCCTTTCCGATGGCGATATGAAAAAGCTTTGGAAGGGTTTGTTCTACTGTGTTTGGCACGCCGACAAGGTTCCTGTTCAATCTGAGCTTATTAATCGTCTTGCTTCTCTGCTCCTCCATCTCGACCTATCGTTAGCTGTTCAGTACTTCTCTGTTTTTCTTCTCACTATGCGTCGTGAATGGGCCGGGATTGATGCGCTCAGGTTAGATAAGTTTTATCTTTTGATTCGTAGGTTTTTGCACCAGTTTTTTGCTTTGTTGAAGAAGCATTCTTGGGATTTGGAACTGTGTCGTCGTTTGGTTCAAGTTTTGGAGGAAAGGGTGTATTTTAATGAGGATAAGTTTCATGGGAATGGTGTTAATTATCAAATTGCTTCTGTGTTTCTTGAGGAACTTAGGCCGTTTCTTCCTCTTCAGAAGGAAGTTGTTGATGTCCTGTTCAAGCCTTTCCTTCTTTCAATGACTAAACTGCCTGATAAAGTGTTGTTGGGAAAAATTAAGTCCAATCTTTTTGATGTGATACTGAAAAAGGGGAAGCAGTTACTCGAGAGTCGAAAACGTGGAGATGATGTTGATTCGGTTGATGATACGGTTGTGTATGGGACAGTTTCCTTGACAAATCAATTCTCAACAACATTTTATGAATTGGGTTCTTCACCTGATTGCTGTCAAGGGAATAGAAAGGTATTGTTTGCCATGCACGAAGAGTTTCAGAAGTTGGAGAAAGATTTTTTCTCATCAGGGATTGAGATTTCGTTTCCAGATCTTCAAGAGCAAGATGGGGATGAAGTGCCTACTTTGGTTCCTATTTCAAGTATAGAAGAGGCTCCTTCGGAAATTTCCCTGGTTGATGTTGATGTGGGTACTGAATCCACTGATAAGGCACTTAAGAAGCAAAAAAAGAGTAAAAAGGCCACTGATGGAAGTGGCAAGAAGAAGGCTAAGAAGGCTAAGAAGGCAAAGAAGACCACAAACGGTATTTCTGATCTTGTTTCTGAAAATACTCCTGCGAATAAGGACAATGAGAATATAGTTGTTGCTAACGGTGAGAATTCTAATAATGAACAGATTAGTGATGGAAATATGATAACCTTTGATGAAACTGTTATATCAAACCTTCAGATGCAATTTGAGAGGGTTGCTGCTGAAGCTGATTTTGGAAAAAGTACTGTAAGTCCTGTAATATCAACCAATGGCTCAGTCAAGAAAAGAAAGAGAGCAAAGAATGTTGGTGAACTGCAGAAACATGATGCAGGACTTCCTAGTGAAGCCGTGGCTGAAGGAAATACAGCTGCAAAAAGCGAAGAGAAGAGTGTTAAGAAGGTAAGGTTTTCAATGAAAAATAACTTGGTTTGGAAACCCCATAATCCTTTACCACCTGAAAGTTTGAGGCTGCCTCCCTCTGTTACTCCAAGGGGAAGTGCACTTAAGAAAGGAATACCTCCAGGTCCTATCTTGGAATTCCCTGCTACAACAAAGAGGACAAAAAGGAGGGCGGTCTCAATGAGGACTAAGAATGGTGTAAGAAGCTTGCCTGTCAAACGTTTGAAGAAATTGAAATCTAAGAGTACTTAGATGCTTTTTGTCTTAGGGTATGAAGTTGCAGAGGTCCAAAGCTTACAGATTTTAATCATTTAATGATTGTCTTAATTACTTCATTTCATTTGGGCGTTGTTCTCACATTGACTTTCATGATCTCAACCGTTTAAAGAGAATGATGATTCTGATGCATCGAGTTGATGATATTTGAAATTGATGCCCTCATGGAATTCTAGCTTAAATGATCAAATTTTCTCTTGGCATTTCATTTTGGTTTTATCTTCCTGGTCCTTTTTCTTTTCTTTTTCCTTAGAGTTCTTGTAGTACAAGGCGGTGGGAGGTGGGAGAAGACGGTTTTGCAGCATAAATGAGTGAGAGGTAGTGTAGAATTTTGGCAGTGTAATGGTTGCTGTTTGTACTTTTTCTTTTGTTTAGTACTTGGTGCCTTTGTAGTTTAGTAGAAAAGGTTCTGTCTTTGGTAAAAACTGGTTGGCCtatgctacttgaatgcaccaaatagtggttatagcttataagttcgactattgaaatatgagaagaagagctggaaatgattaaagttcctcggttcctaattatttcaagctgttttttgcactagtttttccttgcagaataccatatgatttgctcctagccaactattgagatggttataaggcaaaaacatttttgtttctctgttacaagtattcatctgcaatattgcatcttcattttctcattttcattggttatggttatctttataCTGTACAGAATGAACAGCACTGTATACTGCCAAATGTATTAGGGGTGATCCAAATCGATCTGTAGAGGGAGAATTGGCTGGA

Coding sequence (CDS)

ATGGAGGAGGTTGTTGAAGGAGATCAGAATTTCACTTCATTAGTCAAGCTTTTGGCGTCCTCCAACAAGGCGACTCGAGACAAGACCCTTCGTGTAATCATCAAGACATGGCTTCCAACTCAAACGAGCCTTTCCGATGGCGATATGAAAAAGCTTTGGAAGGGTTTGTTCTACTGTGTTTGGCACGCCGACAAGGTTCCTGTTCAATCTGAGCTTATTAATCGTCTTGCTTCTCTGCTCCTCCATCTCGACCTATCGTTAGCTGTTCAGTACTTCTCTGTTTTTCTTCTCACTATGCGTCGTGAATGGGCCGGGATTGATGCGCTCAGGTTAGATAAGTTTTATCTTTTGATTCGTAGGTTTTTGCACCAGTTTTTTGCTTTGTTGAAGAAGCATTCTTGGGATTTGGAACTGTGTCGTCGTTTGGTTCAAGTTTTGGAGGAAAGGGTGTATTTTAATGAGGATAAGTTTCATGGGAATGGTGTTAATTATCAAATTGCTTCTGTGTTTCTTGAGGAACTTAGGCCGTTTCTTCCTCTTCAGAAGGAAGTTGTTGATGTCCTGTTCAAGCCTTTCCTTCTTTCAATGACTAAACTGCCTGATAAAGTGTTGTTGGGAAAAATTAAGTCCAATCTTTTTGATGTGATACTGAAAAAGGGGAAGCAGTTACTCGAGAGTCGAAAACGTGGAGATGATGTTGATTCGGTTGATGATACGGTTGTGTATGGGACAGTTTCCTTGACAAATCAATTCTCAACAACATTTTATGAATTGGGTTCTTCACCTGATTGCTGTCAAGGGAATAGAAAGGTATTGTTTGCCATGCACGAAGAGTTTCAGAAGTTGGAGAAAGATTTTTTCTCATCAGGGATTGAGATTTCGTTTCCAGATCTTCAAGAGCAAGATGGGGATGAAGTGCCTACTTTGGTTCCTATTTCAAGTATAGAAGAGGCTCCTTCGGAAATTTCCCTGGTTGATGTTGATGTGGGTACTGAATCCACTGATAAGGCACTTAAGAAGCAAAAAAaGAGTAAAAAGGCCACTGATGGAAGTGGCAAGAAGAAGGCTAAGAAGGCTAAGAAGGCAAAGAAGACCACAAACGGTATTTCTGATCTTGTTTCTGAAAATACTCCTGCGAATAAGGACAATGAGAATATAGTTGTTGCTAACGGTGAGAATTCTAATAATGAACAGATTAGTGATGGAAATATGATAACCTTTGATGAAACTGTTATATCAAACCTTCAGATGCAATTTGAGAGGGTTGCTGCTGAAGCTGATTTTGGAAAAAGTACTGTAAGTCCTGTAATATCAACCAATGGCTCAGTCAAGAAAaGAAAGAGAGCAAAGAATGTTGGTGAACTGCAGAAACATGATGCAGGACTTCCTAGTGAAGCCGTGGCTGAAGGAAATACAGCTGCAAAAAGCGAAGAGAAGAGTGTTAAGAAGGTAAGGTTTTCAATGAAAAATAACTTGGTTTGGAAACCCCATAATCCTTTACCACCTGAAAGTTTGAGGCTGCCTCCCTCTGTTACTCCAAGGGgAAGTGCACTTAAGAAAGGAATACCTCCAGGTCCTATCTTGGAATTCCCTGCTACAACAAAGAGGACAAAAAGGAGGGCGGTCTCAATGAGGACTAAGAATGGTGTAAGAAGCTTGCCTGTCAAACGTTTGAAGAAATTGAAATCTAAGAGTACTTAG

Protein sequence

MEEVVEGDQNFTSLVKLLASSNKATRDKTLRVIIKTWLPTQTSLSDGDMKKLWKGLFYCVWHADKVPVQSELINRLASLLLHLDLSLAVQYFSVFLLTMRREWAGIDALRLDKFYLLIRRFLHQFFALLKKHSWDLELCRRLVQVLEERVYFNEDKFHGNGVNYQIASVFLEELRPFLPLQKEVVDVLFKPFLLSMTKLPDKVLLGKIKSNLFDVILKKGKQLLESRKRGDDVDSVDDTVVYGTVSLTNQFSTTFYELGSSPDCCQGNRKVLFAMHEEFQKLEKDFFSSGIEISFPDLQEQDGDEVPTLVPISSIEEAPSEISLVDVDVGTESTDKALKKQKKSKKATDGSGKKKAKKAKKAKKTTNGISDLVSENTPANKDNENIVVANGENSNNEQISDGNMITFDETVISNLQMQFERVAAEADFGKSTVSPVISTNGSVKKRKRAKNVGELQKHDAGLPSEAVAEGNTAAKSEEKSVKKVRFSMKNNLVWKPHNPLPPESLRLPPSVTPRGSALKKGIPPGPILEFPATTKRTKRRAVSMRTKNGVRSLPVKRLKKLKSKST*

Homology

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BLAST of Cucsa.209350 vs. Swiss-Prot
Match: RRP1B_MOUSE (Ribosomal RNA processing protein 1 homolog B OS=Mus musculus GN=Rrp1b PE=1 SV=2)

HSP 1 Score: 119.8 bits (299), Expect = 9.8e-26
Identity = 80/228 (35.09%), Postives = 122/228 (53.51%), Query Frame = 1


Query: 18  LASSNKATRDKTLRVIIKTWLPTQT-----SLSDGDMKKLWKGLFYCVWHADKVPVQSEL 77
           LASS K  RD+ +R + + +L  +T     S S  ++ K+WKGLFYC+W  D+  +Q EL
Sbjct: 16  LASSEKGVRDRAVRKL-RQYLSARTQSDTGSFSQEELLKIWKGLFYCMWVQDEPLLQEEL 75

Query: 78  INRLASLLLHLDLSLAVQYFSV--FLLTMRREWAGIDALRLDKFYLLIRRFLHQFFALLK 137
            N + S L+H+  SL  QY  +  F  TM REW GID L+LDK+Y+LIR  L Q F +LK
Sbjct: 76  AN-IISQLIHVVNSLEAQYLFIQTFWQTMNREWQGIDKLQLDKYYMLIRLVLRQSFEVLK 135

Query: 138 KHSWDLELCRRLVQVLEERVYFNEDKFHGNGVNYQIASVFLEELRPF--LPLQKEVVDVL 197
           +++W+       + +L + +   E +   NGV   +  V+LEEL       L  +    L
Sbjct: 136 RNAWEESQITLFLDILMKEILSPESQ-SPNGVRTHLIDVYLEELTTVGGAELLADQNLKL 195

Query: 198 FKPFLLSMTKLPDKVLLGKIKSNLFDVILKKG----KQLLESRKRGDD 233
             PF     K  D  L+  +   +F+VI+ +     ++ +E RK  +D
Sbjct: 196 IDPFCRIAAKTKDHTLVQTVARGVFEVIVDQSACVPQESVEERKTKED 240

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BLAST of Cucsa.209350 vs. Swiss-Prot
Match: RRP1B_HUMAN (Ribosomal RNA processing protein 1 homolog B OS=Homo sapiens GN=RRP1B PE=1 SV=3)

HSP 1 Score: 113.6 bits (283), Expect = 7.0e-24
Identity = 83/258 (32.17%), Postives = 128/258 (49.61%), Query Frame = 1


Query: 18  LASSNKATRDKTLR-----VIIKTWLPTQTSLSDGDMKKLWKGLFYCVWHADKVPVQSEL 77
           LASS K  RD+ ++     + +KT   T    S  ++ K+WKGLFYC+W  D+  +Q EL
Sbjct: 16  LASSEKGIRDRAVKKLRQYISVKTQRETG-GFSQEELLKIWKGLFYCMWVQDEPLLQEEL 75

Query: 78  INRLASLLLHLDLSLAVQYF-SVFLLTMRREWAGIDALRLDKFYLLIRRFLHQFFALLKK 137
            N +A L+  ++ S A   F   F  TM REW GID LRLDK+Y+LIR  L Q F +LK+
Sbjct: 76  ANTIAQLVHAVNNSAAQHLFIQTFWQTMNREWKGIDRLRLDKYYMLIRLVLRQSFEVLKR 135

Query: 138 HSWDLELCRRLVQVLEERVYFNEDKFHGNGVNYQIASVFLEELRPFLPLQKEVVDVLFK- 197
           + W+    +  + VL + V   E +   NGV +    ++L+EL   +  ++ + D   K 
Sbjct: 136 NGWEESRIKVFLDVLMKEVLCPESQ-SPNGVRFHFIDIYLDELSK-VGGKELLADQNLKF 195

Query: 198 --PFLLSMTKLPDKVLLGKIKSNLFDVILKKG-----KQLLESRKRGDDVDSVDDTVVYG 257
             PF     K  D  L+  I   +F+ I+ +      + + E + +  D D   + +   
Sbjct: 196 IDPFCKIAAKTKDHTLVQTIARGVFEAIVDQSPFVPEETMEEQKTKVGDGDLSAEEIPEN 255

Query: 258 TVSLTNQFSTTFYELGSS 262
            VSL    S     LG +
Sbjct: 256 EVSLRRAVSKKKTALGKN 270

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BLAST of Cucsa.209350 vs. Swiss-Prot
Match: RRP1_HUMAN (Ribosomal RNA processing protein 1 homolog A OS=Homo sapiens GN=RRP1 PE=1 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 2.3e-22
Identity = 74/237 (31.22%), Postives = 121/237 (51.05%), Query Frame = 1


Query: 14  LVKLLASSNKATRDKTLRVIIKTWLPTQTSLSDG-----DMKKLWKGLFYCVWHADKVPV 73
           L + LA + + TRD+ +R + K ++  +T  + G     ++ K+WKGLFYC+W  DK  +
Sbjct: 13  LAQRLAGNEQVTRDRAVRKLRK-YIVARTQRAAGGFTHDELLKVWKGLFYCMWMQDKPLL 72

Query: 74  QSELINRLASLLLHLDLSLAVQ--YFSVFLLTMRREWAGIDALRLDKFYLLIRRFLHQFF 133
           Q EL  R  S L+H   +   Q  +   F  TM REW GID LRLDKFY+L+R  L++  
Sbjct: 73  QEEL-GRTISQLVHAFQTTEAQHLFLQAFWQTMNREWTGIDRLRLDKFYMLMRMVLNESL 132

Query: 134 ALLKKHSWDLELCRRLVQVLEERVYFNEDKFHGNGVNYQIASVFLEELRPFLPLQKEVVD 193
            +LK   W+      L+++L   +  +      NGV      +FLEEL   +  ++   D
Sbjct: 133 KVLKMQGWEERQIEELLELLMTEI-LHPSSQAPNGVKSHFIEIFLEELTK-VGAEELTAD 192

Query: 194 VLFK---PFLLSMTKLPDKVLLGKIKSNLFDVILKKGKQLLESRKRGDDVDSVDDTV 241
              K   PF     +  D ++L  I   +F+ I+++    +E     +++D+ D+ V
Sbjct: 193 QNLKFIDPFCRIAARTKDSLVLNNITRGIFETIVEQAPLAIEDLL--NELDTQDEEV 243

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BLAST of Cucsa.209350 vs. Swiss-Prot
Match: RRP1_CAEEL (Ribosomal RNA processing protein 1 homolog OS=Caenorhabditis elegans GN=C47E12.7 PE=3 SV=2)

HSP 1 Score: 108.6 bits (270), Expect = 2.3e-22
Identity = 87/356 (24.44%), Postives = 158/356 (44.38%), Query Frame = 1


Query: 18  LASSNKATRDKTLRVIIKTWLPTQTS---LSDGDMKKLWKGLFYCVWHADKVPVQSELIN 77
           LA    ATR + LRV+   W+  Q++     D D+ +L KGL Y +W  DK+ +Q EL +
Sbjct: 16  LACGEPATRQRALRVL-HDWIRDQSAKKHFDDADLMRLCKGLHYVMWMQDKMILQEELAD 75

Query: 78  RLASLL-LHLDLSLAVQYFSVFLLTMRREWAGIDALRLDKFYLLIRRFLHQFFALLKKHS 137
           R+  L+ +       V++ + FL ++ +EW  ID  R+DKF + +RR +   F  L +  
Sbjct: 76  RIGGLINIFTSEEEKVRFVACFLKSLSKEWPHIDRWRMDKFLMEVRRMVRACFTHLAELK 135

Query: 138 WDLELCRRLVQVLEERVYFNEDKFHGNGVNYQIASVFLEELRPFLPLQKEVVDVLFKPFL 197
           W  ++     +V +E    + DK     + +  AS+ L+EL     L K+ V    KP++
Sbjct: 136 WKKDIRDEYWKVFQETT-ISTDKSFNEALKFHFASILLDELDAAGGLTKKQVTACLKPYI 195

Query: 198 -LSMTKLPDKVLLGKIKSNLFDVILKKGKQLLESRKRGDDVDSVDDTVVYGTVSLTNQFS 257
            L   K   + L   +   +F  IL++   L+ + + G+++D       Y       +  
Sbjct: 196 ELLGNKDISEYLFTSLYEEIFKTILQQKSDLITAVEEGEEMDQGGIEFSY------KEIG 255

Query: 258 TTFYELGSSPDCCQGNRKVLFAMHEEFQKLEKDFFSSGIEISFPDLQEQDGDEVPTLVPI 317
              +E+G         RK ++ + ++F K  +                QD     T VP 
Sbjct: 256 ALLFEVGKQEHLNAKRRKKIYDLVKKFDKSSRG---------------QDPLHFETPVP- 315

Query: 318 SSIEEAPSEISLVDVDVGTESTDKALKKQKKSKKATDGSGKKKAKKAKKAKKTTNG 369
              +E  +     + +        + K+++KS +      KK+A++A +A +  NG
Sbjct: 316 ---KERLTRHDYEEAEKKAIVLANSFKQERKSSRKVKSQIKKRAREAAEAARQENG 344

[Close]

BLAST of Cucsa.209350 vs. Swiss-Prot
Match: RRP1_MOUSE (Ribosomal RNA processing protein 1 homolog A OS=Mus musculus GN=Rrp1 PE=1 SV=2)

HSP 1 Score: 108.2 bits (269), Expect = 2.9e-22
Identity = 71/221 (32.13%), Postives = 111/221 (50.23%), Query Frame = 1


Query: 14  LVKLLASSNKATRDKTLRVIIKTWLPTQTSLSDG-----DMKKLWKGLFYCVWHADKVPV 73
           L + LA + + TRD+ LR + K ++  ++  + G     ++ K+WKGLFYC+W  DK P+
Sbjct: 13  LAQRLAGNEQVTRDRALRKLRK-YIEARSQRATGGFTPDELLKVWKGLFYCMWMQDK-PL 72

Query: 74  QSELINRLASLLLHLDLSLAVQ--YFSVFLLTMRREWAGIDALRLDKFYLLIRRFLHQFF 133
           Q E + R  + L+H   +   Q  +   F  TM REW GID LRLDKFY+L+R  L +  
Sbjct: 73  QQEELGRTIAQLVHAFHTTEAQHQFLKAFWQTMIREWVGIDRLRLDKFYMLMRMVLSESL 132

Query: 134 ALLKKHSWDLELCRRLVQVLEERVYFNEDKFHGNGVNYQIASVFLEELRPF--LPLQKEV 193
             +K   WD     +L+++L   +  N D    +GV      +FLEEL       L  + 
Sbjct: 133 KAVKARGWDERQIEQLLELLTTEI-LNPDSQAPSGVKSHFLEIFLEELAKVGAAELTADQ 192

Query: 194 VDVLFKPFLLSMTKLPDKVLLGKIKSNLFDVILKKGKQLLE 226
                 PF     +  D  +L KI  ++F  I+++    +E
Sbjct: 193 NLQFIDPFCQIAARTKDSQVLHKIIQSIFQTIVEQAPLAIE 230

[Close]

BLAST of Cucsa.209350 vs. TrEMBL
Match: A0A0A0LGX3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G062650 PE=4 SV=1)

HSP 1 Score: 1112.8 bits (2877), Expect = 0.0e+00
Identity = 566/566 (100.00%), Postives = 566/566 (100.00%), Query Frame = 1


Query: 1   MEEVVEGDQNFTSLVKLLASSNKATRDKTLRVIIKTWLPTQTSLSDGDMKKLWKGLFYCV 60
           MEEVVEGDQNFTSLVKLLASSNKATRDKTLRVIIKTWLPTQTSLSDGDMKKLWKGLFYCV
Sbjct: 1   MEEVVEGDQNFTSLVKLLASSNKATRDKTLRVIIKTWLPTQTSLSDGDMKKLWKGLFYCV 60

Query: 61  WHADKVPVQSELINRLASLLLHLDLSLAVQYFSVFLLTMRREWAGIDALRLDKFYLLIRR 120
           WHADKVPVQSELINRLASLLLHLDLSLAVQYFSVFLLTMRREWAGIDALRLDKFYLLIRR
Sbjct: 61  WHADKVPVQSELINRLASLLLHLDLSLAVQYFSVFLLTMRREWAGIDALRLDKFYLLIRR 120

Query: 121 FLHQFFALLKKHSWDLELCRRLVQVLEERVYFNEDKFHGNGVNYQIASVFLEELRPFLPL 180
           FLHQFFALLKKHSWDLELCRRLVQVLEERVYFNEDKFHGNGVNYQIASVFLEELRPFLPL
Sbjct: 121 FLHQFFALLKKHSWDLELCRRLVQVLEERVYFNEDKFHGNGVNYQIASVFLEELRPFLPL 180

Query: 181 QKEVVDVLFKPFLLSMTKLPDKVLLGKIKSNLFDVILKKGKQLLESRKRGDDVDSVDDTV 240
           QKEVVDVLFKPFLLSMTKLPDKVLLGKIKSNLFDVILKKGKQLLESRKRGDDVDSVDDTV
Sbjct: 181 QKEVVDVLFKPFLLSMTKLPDKVLLGKIKSNLFDVILKKGKQLLESRKRGDDVDSVDDTV 240

Query: 241 VYGTVSLTNQFSTTFYELGSSPDCCQGNRKVLFAMHEEFQKLEKDFFSSGIEISFPDLQE 300
           VYGTVSLTNQFSTTFYELGSSPDCCQGNRKVLFAMHEEFQKLEKDFFSSGIEISFPDLQE
Sbjct: 241 VYGTVSLTNQFSTTFYELGSSPDCCQGNRKVLFAMHEEFQKLEKDFFSSGIEISFPDLQE 300

Query: 301 QDGDEVPTLVPISSIEEAPSEISLVDVDVGTESTDKALKKQKKSKKATDGSGKKKAKKAK 360
           QDGDEVPTLVPISSIEEAPSEISLVDVDVGTESTDKALKKQKKSKKATDGSGKKKAKKAK
Sbjct: 301 QDGDEVPTLVPISSIEEAPSEISLVDVDVGTESTDKALKKQKKSKKATDGSGKKKAKKAK 360

Query: 361 KAKKTTNGISDLVSENTPANKDNENIVVANGENSNNEQISDGNMITFDETVISNLQMQFE 420
           KAKKTTNGISDLVSENTPANKDNENIVVANGENSNNEQISDGNMITFDETVISNLQMQFE
Sbjct: 361 KAKKTTNGISDLVSENTPANKDNENIVVANGENSNNEQISDGNMITFDETVISNLQMQFE 420

Query: 421 RVAAEADFGKSTVSPVISTNGSVKKRKRAKNVGELQKHDAGLPSEAVAEGNTAAKSEEKS 480
           RVAAEADFGKSTVSPVISTNGSVKKRKRAKNVGELQKHDAGLPSEAVAEGNTAAKSEEKS
Sbjct: 421 RVAAEADFGKSTVSPVISTNGSVKKRKRAKNVGELQKHDAGLPSEAVAEGNTAAKSEEKS 480

Query: 481 VKKVRFSMKNNLVWKPHNPLPPESLRLPPSVTPRGSALKKGIPPGPILEFPATTKRTKRR 540
           VKKVRFSMKNNLVWKPHNPLPPESLRLPPSVTPRGSALKKGIPPGPILEFPATTKRTKRR
Sbjct: 481 VKKVRFSMKNNLVWKPHNPLPPESLRLPPSVTPRGSALKKGIPPGPILEFPATTKRTKRR 540

Query: 541 AVSMRTKNGVRSLPVKRLKKLKSKST 567
           AVSMRTKNGVRSLPVKRLKKLKSKST
Sbjct: 541 AVSMRTKNGVRSLPVKRLKKLKSKST 566

[Close]

BLAST of Cucsa.209350 vs. TrEMBL
Match: A0A067F3M5_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g008164mg PE=4 SV=1)

HSP 1 Score: 592.0 bits (1525), Expect = 7.5e-166
Identity = 318/579 (54.92%), Postives = 408/579 (70.47%), Query Frame = 1


Query: 1   MEEVVEGDQNFTSLVKLLASSNKATRDKTLRVIIKTWLPTQTSLSDGDMKKLWKGLFYCV 60
           M+E+ E ++  +SL+K LAS NK TR+K L  ++K WLP QT +SD DMKKLWKGLFYCV
Sbjct: 1   MKEMGETEEVGSSLIKQLASCNKGTREKALNALLKNWLPNQTQISDDDMKKLWKGLFYCV 60

Query: 61  WHADKVPVQSELINRLASLLLHLDLSLAVQYFSVFLLTMRREWAGIDALRLDKFYLLIRR 120
           WHADK+  Q++LI  LAS++  LDL LA+ YFS FLLTMRREW GID LRLDKFYLL+RR
Sbjct: 61  WHADKLAFQTQLIEFLASVITSLDLPLAIHYFSTFLLTMRREWTGIDGLRLDKFYLLVRR 120

Query: 121 FLHQFFALLKKHSWDLELCRRLVQVLEERVYFNEDKFHGNGVNYQIASVFLEELRPFLPL 180
           FL  +F ++KK+ WD+EL ++L+ VL  R + ++DKF GNGVNY I SVF+EE+R FLPL
Sbjct: 121 FLRYYFQIMKKNLWDIELVKKLMGVLVHRSWLSDDKFLGNGVNYHIVSVFVEEIRAFLPL 180

Query: 181 QKEVVDVLFKPFLLSMTKLPDKVLLGKIKSNLFDVILKKGKQLLESRKRGDDVDSVDDTV 240
           +KEVV+ +F PF+  M K+ DKVL+GKIKSN+FDV+ K G++LL+ +K G +VDS D+ V
Sbjct: 181 RKEVVEDIFGPFVSVMAKVQDKVLVGKIKSNVFDVLSKMGRRLLDVKKSGGEVDSSDEVV 240

Query: 241 VYGTVSLTNQFSTTFYELGSSPDCCQGNRKVLFAMHEEFQKLEKDFFSSGIEISFPDL-- 300
           + GT+++   FS  F+ELGSS +CCQGNRKVLF++HEEF KLEKDF SSG+EIS PD+  
Sbjct: 241 LLGTIAIVLGFSGKFFELGSSVECCQGNRKVLFSLHEEFLKLEKDFGSSGVEISIPDVSV 300

Query: 301 -QEQDGDEVPTLVPISSIEEAPSEISLVDVDVGTESTDKALKKQKKSKKATDGSGKKKAK 360
             E + DEVP LVPISS  +     S  DV  G  S D+ L K+KK K A+ G+ K   K
Sbjct: 301 GDEDEDDEVPNLVPISSYMDVDG--SGDDVAEGAAS-DEVLNKRKKGKNASSGNDKNGKK 360

Query: 361 KAKKAKKTTNGISDLVSENTPANKDNENIVVANGENSNNEQISDGNMITFDETVISNLQM 420
             KK KK  N +SD+ SE + + KD+ENIV A   +S +EQ  D N I F+E+VISNLQM
Sbjct: 361 SKKKKKK--NAVSDVGSETSLSGKDDENIVNATSNDSIDEQNHDTNFIPFNESVISNLQM 420

Query: 421 QFERVAAEADFGKSTVSP-------VISTNGSV-KKRKRAKNVGELQKHDAGLPSEAVAE 480
           QFE+VAAE     +  +           TNG+V KKRKR KN    Q  +     E  A+
Sbjct: 421 QFEKVAAEVGMEDNVDTACDLPQDRANGTNGTVSKKRKRVKNKDGKQSKNPESTREGDAD 480

Query: 481 GNTAAKSEEKSVKKVRFSMKNNLVWKPHNPLPPESLRLPPSVTPRGSALKKGIPPGPILE 540
               AKS EKS KKVRFSMK+NLVWKP +PLPP+SLRLPPSV PRGSALKKG+PPGP++E
Sbjct: 481 DCLTAKSGEKSAKKVRFSMKSNLVWKPQSPLPPQSLRLPPSVAPRGSALKKGVPPGPVME 540

Query: 541 FPATTKRTKRRAVSMRTKNGV---RSLPVKRLKKLKSKS 566
               +K+ K+RA S++    V   ++  +K  +KLKS S
Sbjct: 541 MSVASKKVKQRAKSVKKARKVIKIKNPTLKGARKLKSLS 574

[Close]

BLAST of Cucsa.209350 vs. TrEMBL
Match: V4WI81_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10010385mg PE=4 SV=1)

HSP 1 Score: 591.3 bits (1523), Expect = 1.3e-165
Identity = 319/579 (55.09%), Postives = 407/579 (70.29%), Query Frame = 1


Query: 1   MEEVVEGDQNFTSLVKLLASSNKATRDKTLRVIIKTWLPTQTSLSDGDMKKLWKGLFYCV 60
           M+E+ E ++  +SL+K LAS NK TR+K L  ++K WLP QT +SD DMKKLWKGLFYCV
Sbjct: 53  MKEMGETEEVGSSLIKQLASCNKGTREKALNALLKNWLPNQTQISDDDMKKLWKGLFYCV 112

Query: 61  WHADKVPVQSELINRLASLLLHLDLSLAVQYFSVFLLTMRREWAGIDALRLDKFYLLIRR 120
           WHADK+  Q++LI  LAS++  LDL LA+ YFS FLLTMRREW GID LRLDKFYLL+RR
Sbjct: 113 WHADKLAFQTQLIEFLASVITSLDLPLAIHYFSTFLLTMRREWTGIDGLRLDKFYLLVRR 172

Query: 121 FLHQFFALLKKHSWDLELCRRLVQVLEERVYFNEDKFHGNGVNYQIASVFLEELRPFLPL 180
           FL  +F ++KK+ WD+EL ++L+ VL  R   ++DKF GNGVNY I SVF+EE+R FLPL
Sbjct: 173 FLRYYFQIMKKNLWDIELVKKLMGVLVHRSLLSDDKFLGNGVNYHIVSVFVEEIRAFLPL 232

Query: 181 QKEVVDVLFKPFLLSMTKLPDKVLLGKIKSNLFDVILKKGKQLLESRKRGDDVDSVDDTV 240
           +KEVV+ +F PF+  M K+ DKVL+GKIKSN+FDV+ K G++LL+ +K G +VDS D+ V
Sbjct: 233 RKEVVEDIFGPFVSVMAKVQDKVLVGKIKSNVFDVLSKMGRRLLDVKKSGGEVDSSDEVV 292

Query: 241 VYGTVSLTNQFSTTFYELGSSPDCCQGNRKVLFAMHEEFQKLEKDFFSSGIEISFPDL-- 300
           + GT+++   FS  F+ELGSS +CCQGNRKVLF++HEEF KLEKDF SSG+EIS PD+  
Sbjct: 293 LLGTIAIVLGFSGKFFELGSSVECCQGNRKVLFSLHEEFLKLEKDFGSSGVEISIPDVSV 352

Query: 301 -QEQDGDEVPTLVPISSIEEAPSEISLVDVDVGTESTDKALKKQKKSKKATDGSGKKKAK 360
             E + DEVP LVPISS  +     S  DV  G  S D+ L K KK KKA+ G+ K   K
Sbjct: 353 GDEDEDDEVPNLVPISSYMDVDG--SGDDVAEGAAS-DEVLNKCKKGKKASSGNDKNGKK 412

Query: 361 KAKKAKKTTNGISDLVSENTPANKDNENIVVANGENSNNEQISDGNMITFDETVISNLQM 420
             KK KK  N +SD+ SE + + KD+ENIV A   +S +EQ  D N I F+E+VISNLQM
Sbjct: 413 SKKKKKK--NAVSDVGSETSLSGKDDENIVNATSNDSIDEQNHDTNFIPFNESVISNLQM 472

Query: 421 QFERVAAEADFGKSTVSP-------VISTNGSV-KKRKRAKNVGELQKHDAGLPSEAVAE 480
           QFE+VAAE     +  +           TNG+V KKRKR KN    Q  +     E  A+
Sbjct: 473 QFEKVAAEVGMEDNVDTACDLPQDRANGTNGTVSKKRKRVKNKDGKQSKNPESTREGDAD 532

Query: 481 GNTAAKSEEKSVKKVRFSMKNNLVWKPHNPLPPESLRLPPSVTPRGSALKKGIPPGPILE 540
               AKS EKS KKVRFSMK+NLVWKP +PLPP+SLRLPPSV PRGSALKKG+PPGP++E
Sbjct: 533 DCLTAKSGEKSAKKVRFSMKSNLVWKPQSPLPPQSLRLPPSVAPRGSALKKGVPPGPVME 592

Query: 541 FPATTKRTKRRAVSMRTKNGV---RSLPVKRLKKLKSKS 566
               +K+ K+RA S++    V   ++  +K  +KLKS S
Sbjct: 593 MSVASKKVKQRAKSVKKARKVIKIKNPTLKGARKLKSLS 626

[Close]

BLAST of Cucsa.209350 vs. TrEMBL
Match: A0A061FFL5_THECC (Ribosomal RNA processing protein 1 B, putative OS=Theobroma cacao GN=TCM_034656 PE=4 SV=1)

HSP 1 Score: 587.4 bits (1513), Expect = 1.8e-164
Identity = 311/563 (55.24%), Postives = 406/563 (72.11%), Query Frame = 1


Query: 13  SLVKLLASSNKATRDKTLRVIIKTWLPTQTSLSDGDMKKLWKGLFYCVWHADKVPVQSEL 72
           +L+K LA+ +K+TRD+ +R ++ TWLP+Q  +SD +MK+LWKGLFYCVWHADK+P QS+L
Sbjct: 11  TLIKQLAACDKSTRDRAVRSLLHTWLPSQAEVSDEEMKRLWKGLFYCVWHADKLPAQSDL 70

Query: 73  INRLASLLLHLDLSLAVQYFSVFLLTMRREWAGIDALRLDKFYLLIRRFLHQFFALLKKH 132
           I +L+S+L  L+  L++QYFSVFLLTMRREW GID LRLDKFYLLIRRFL+ FF +LKK 
Sbjct: 71  IEKLSSVLPKLETGLSLQYFSVFLLTMRREWTGIDKLRLDKFYLLIRRFLNCFFVMLKKW 130

Query: 133 SWDLELCRRLVQVLEERVYFNEDKFHGNGVNYQIASVFLEELRPFLPLQKEVVDVLFKPF 192
           SWDL+  RR ++VL +  +  +DKF GNGVNY IAS+FLEE+RPFLP++KEVV+VL +PF
Sbjct: 131 SWDLDFTRRSIRVLVDGTFLADDKFQGNGVNYHIASIFLEEIRPFLPVKKEVVEVLLEPF 190

Query: 193 LLSMTKLPDKVLLGKIKSNLFDVILKKGKQLLESRKRGDDVDSVDDTVVYGTVSLTNQFS 252
           +  M K+ DKVL+GKI+SN+FDV +K G++ LE ++ GD+VD  +D VV GT+SL   FS
Sbjct: 191 VGIMGKVGDKVLVGKIRSNVFDVFVKMGRRFLELKRSGDEVDEGEDLVVLGTISLLMGFS 250

Query: 253 TTFYELGSSPDCCQGNRKVLFAMHEEFQKLEKDFFSSGIEISFPDLQE-QDGDEVPTLVP 312
             FYELGSS DCCQGNRKV+  +HEEF KLEKD    GI++S P+  E  + DEVP L+P
Sbjct: 251 AKFYELGSSADCCQGNRKVVLGLHEEFLKLEKDLTLLGIDVSIPEPNEGGEEDEVPELIP 310

Query: 313 ISS---IEEAPSEISLVDVDVGTESTDKALKKQKKSKKATDGSGKKKAKKAKKAKKTTNG 372
           I+S   ++++       +V+    S  KALKK KK+KKAT GSG KK KK K A      
Sbjct: 311 IASEMEVDDSDGVSEPAEVN-ANGSAKKALKKSKKAKKATRGSG-KKTKKCKNA------ 370

Query: 373 ISDLVSENTPANKDNENIVVANGENSNNEQISDGNMITFDETVISNLQMQFERVAAEA-- 432
                 E +PA+++N+ +V A   NS+ EQ  DG+ ITF E+VISNLQ+QFE+VAAE   
Sbjct: 371 ------ECSPADQENDVMVPAESANSSIEQNGDGHSITFTESVISNLQLQFEKVAAEVGL 430

Query: 433 DFGKSTVSPVISTNGSV-KKRKRAKNVGELQKHDAGLPSEAVAEGNTAAKSEEKSVKKVR 492
           D   ++   +   NG+  KKRKR K+V   +  +  L ++   EG   AK+ EKS K+VR
Sbjct: 431 DGDVASACDLPKVNGAASKKRKRVKSVDGQKSQNGELTNQGDGEGGGTAKTGEKSTKRVR 490

Query: 493 FSMKNNLVWKPHNPLPPESLRLPPSVTPRGSALKKGIPPGPILEFPATTKRTKRRAVSMR 552
           FSMKNNLVWKPH+PLPP+SLRLPPSVTPRGSALKKGIPPGPI E P  TK+ K+     +
Sbjct: 491 FSMKNNLVWKPHSPLPPQSLRLPPSVTPRGSALKKGIPPGPITEVPPLTKKVKKAKSVKK 550

Query: 553 TKNGVRSL--PVKRLKKLKSKST 567
            +  ++S+   VKR KKLKS S+
Sbjct: 551 ARKVIKSMYPLVKRTKKLKSVSS 559

[Close]

BLAST of Cucsa.209350 vs. TrEMBL
Match: F6GXI5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0052g00510 PE=4 SV=1)

HSP 1 Score: 584.7 bits (1506), Expect = 1.2e-163
Identity = 317/559 (56.71%), Postives = 405/559 (72.45%), Query Frame = 1


Query: 15  VKLLASSNKATRDKTLRVIIKTWLPTQTSLSDGDMKKLWKGLFYCVWHADKVPVQSELIN 74
           ++ LAS +K+TRD+ LR ++ TWLP+Q+ +S+ DMKK+WKGLFY +WHADK PVQS+LI+
Sbjct: 6   IRHLASCDKSTRDEALR-LLHTWLPSQSQVSEEDMKKVWKGLFYSLWHADKTPVQSDLID 65

Query: 75  RLASLLLHLDLSLAVQYFSVFLLTMRREWAGIDALRLDKFYLLIRRFLHQFFALLKKHSW 134
           RLASLL  L+L L++ YFSVFLLTMRREW GIDALRLDKFYLLIR+F++ FF +LK +SW
Sbjct: 66  RLASLLTTLNLPLSIHYFSVFLLTMRREWPGIDALRLDKFYLLIRKFMYNFFLVLKNNSW 125

Query: 135 DLELCRRLVQVLEERVYFNEDKFHGNGVNYQIASVFLEELRPFLPLQKEVVDVLFKPFLL 194
           DLE+ +RL+ VLE      + +F GNGV Y +ASVFLEELRPFLP+++E+V VLF+PF+ 
Sbjct: 126 DLEISKRLIVVLE----LEDGRFSGNGVGYHVASVFLEELRPFLPVRREIVSVLFEPFVE 185

Query: 195 SMTKLPDKVLLGKIKSNLFDVILKKGKQLLESRKRGDDVDSVDDTVVYGTVSLTNQFSTT 254
            M +  DKVL+GK+KSN+FD +++ G++LLE ++ G D     D V +GT+++   FS  
Sbjct: 186 VMGRSADKVLVGKVKSNVFDFLVRMGQRLLEVKRLGGDEGGDGDAVAFGTLAVGFGFSKK 245

Query: 255 FYELGSSPDCCQGNRKVLFAMHEEFQKLEKDFFSSGIEISFPDLQEQDGDEVPTLVPISS 314
           FYELGS+PDC QGNRKVLF +HE F KLEKDF S+ IEIS P+    D DE+PTL+PI+ 
Sbjct: 246 FYELGSAPDCLQGNRKVLFGLHEGFAKLEKDFASARIEISIPEDDNCDEDELPTLIPIAQ 305

Query: 315 IEEAPSEISLVDVDVGTESTDKALKKQKKSKKATDGSGKKKAKKAKKAKKTTNGISDLVS 374
            E      S V   VG  S  KA KK KK KK + GS KK   K KK+        DLVS
Sbjct: 306 PEAEVEGASEVVESVGNGSARKASKKSKKLKKVSGGSDKKNKMKKKKS-------PDLVS 365

Query: 375 ENTPANKDNENIVVANGENSNNEQISDGNMITFDETVISNLQMQFERVAAEADFGKSTV- 434
           EN+   + NEN+ V N ENSN E  SD ++I F+E+VISNLQMQFE+VAAE   G   + 
Sbjct: 366 ENSATVEYNENVTVPNDENSNCEPSSDQSLIDFNESVISNLQMQFEKVAAEVGLGNELMG 425

Query: 435 ---SPVISTNGSV-KKRKRAKNVGELQKHDAGLPSEAVAEGNTAAKSEEKSVKKVRFSMK 494
              SP    NG+V KKRKRAKN  E   HD  + S+   E +  AKS+ KS KKV+FS+K
Sbjct: 426 LCDSPTRPVNGTVSKKRKRAKNNNE---HD--VSSQGDDESSALAKSKGKSAKKVKFSIK 485

Query: 495 NNLVWKPHNPLPPESLRLPPSVTPRGSALKKGIPPGPILEFPATTKRTKRRAVSMRT-KN 554
           NNLVWKP +PLPP+SLRLPPSVTPRGSALKKGIPPGP+ E P  TK+ K+RA S++  +N
Sbjct: 486 NNLVWKPQSPLPPQSLRLPPSVTPRGSALKKGIPPGPVREMP-QTKKVKKRAKSLKKGRN 545

Query: 555 GVRSL--PVKRLKKLKSKS 566
           G++S+   +KRLKKL+S S
Sbjct: 546 GIKSISPAIKRLKKLQSLS 546

[Close]

BLAST of Cucsa.209350 vs. TAIR10
Match: AT5G20600.1 (AT5G20600.1 FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 491.9 bits (1265), Expect = 5.3e-139
Identity = 277/569 (48.68%), Postives = 365/569 (64.15%), Query Frame = 1


Query: 2   EEVVEGDQNFTSLVKLLASSNKATRDKTLRVIIKTWLPTQTSLSDGDMKKLWKGLFYCVW 61
           E+ +  +++  SL+K LAS  ++ RD++LR +++TWLP QT +SD DMKKLW+G+FYCVW
Sbjct: 11  EQALPIEEDCKSLIKKLASCKQSIRDRSLRTVLRTWLPEQTEISDEDMKKLWQGIFYCVW 70

Query: 62  HADKVPVQSELINRLASLLLHLDLSLAVQYFSVFLLTMRREWAGIDALRLDKFYLLIRRF 121
           HADK   QSELI+RL+S L  L L L++ YF+VFL TMRREW+ ID LRLDKFYLLIRRF
Sbjct: 71  HADKSLYQSELIDRLSSALQSLPLPLSIHYFTVFLFTMRREWSRIDRLRLDKFYLLIRRF 130

Query: 122 LHQFFALLKKHSWDLELCRRLVQVLEERVYFNEDKFHGNGVNYQIASVFLEELRPFLPLQ 181
           LH FF+L+  +SWDLE  RRL+ +L +     +DKF GNGVNY I S F+EELRPFLPL+
Sbjct: 131 LHGFFSLIDSNSWDLEFTRRLMGILFDGTLLADDKFQGNGVNYHITSAFVEELRPFLPLR 190

Query: 182 KEVVDVLFKPFLLSMTKLPDKVLLGKIKSNLFDVILKKGKQLLESRKRGDD-VDSVDDTV 241
           KEV+++LF PF+  M  + DK+L+GKIKSNLFD +LK GK+LL  ++ GDD V   DD V
Sbjct: 191 KEVLELLFAPFVKIMGVVNDKILVGKIKSNLFDELLKMGKKLLIIKQSGDDAVPEDDDVV 250

Query: 242 VYGTVSLTNQFSTTFYELGSSPDCCQGNRKVLFAMHEEFQKLEKDFFSSGIEISFPDLQE 301
           V G+++L+ +F+  FYELGSSP+C QGNRK++FA+H+EF +LEKD  SS IE+S  +   
Sbjct: 251 VLGSIALSMEFAKRFYELGSSPECHQGNRKLIFALHKEFLQLEKDMSSSSIEVSIVEASR 310

Query: 302 QDGDEVPTLVPISSIEEAPSEISLVDVDVGTESTDKALKKQKKSKKATDGSGKKKAKKAK 361
              DEVP  VP+S                  ES    + K KK       S KK  KK  
Sbjct: 311 PGNDEVPESVPVS------------------ESNTNVVSKSKKIVANGSSSKKKGLKKCS 370

Query: 362 KAKKTT---NGISDLVSENTPANKDNENIVVANGENSNNEQISDGNMITFDETVISNLQM 421
           K KK +     + D V +    NKD                       +FDET+IS+L+ 
Sbjct: 371 KTKKDSVKKGAVMDSVVDL--GNKDE----------------------SFDETMISDLRQ 430

Query: 422 QFERVAAEADFGKSTVSPV------ISTNGSVKKRKRAKNVGELQKHDAGLPSEAVAEGN 481
           +FE++A+E    KS V+ V      +S +   KKRKR +N GE Q       +   AE +
Sbjct: 431 EFEKIASEMSPSKSEVASVCDVAEPVSVSKKTKKRKR-ENKGEEQ---VSTVNRDAAETS 490

Query: 482 TAAKSEEKSVKKVRFSMKNNLVWKPHNPLPPESLRLPPSVTPRGSALKKGIPPGPILEFP 541
            A  S EKS K+VRF+MKNNLVWKPH PLPP+ LR PPS TPRGSALK+GIP GP+ E  
Sbjct: 491 LAGPSSEKSSKRVRFAMKNNLVWKPHCPLPPQDLRCPPSATPRGSALKQGIPAGPVREL- 528

Query: 542 ATTKRTKRRAVSMRTKNGVRSLPVKRLKK 561
             +++TK++ V    + GV+S  +K LKK
Sbjct: 551 -ASRKTKKK-VKPAARRGVKS--IKNLKK 528

[Close]

BLAST of Cucsa.209350 vs. NCBI nr
Match: gi|449465344|ref|XP_004150388.1| (PREDICTED: ribosomal RNA processing protein 1 homolog isoform X1 [Cucumis sativus])

HSP 1 Score: 1112.8 bits (2877), Expect = 0.0e+00
Identity = 566/566 (100.00%), Postives = 566/566 (100.00%), Query Frame = 1


Query: 1   MEEVVEGDQNFTSLVKLLASSNKATRDKTLRVIIKTWLPTQTSLSDGDMKKLWKGLFYCV 60
           MEEVVEGDQNFTSLVKLLASSNKATRDKTLRVIIKTWLPTQTSLSDGDMKKLWKGLFYCV
Sbjct: 1   MEEVVEGDQNFTSLVKLLASSNKATRDKTLRVIIKTWLPTQTSLSDGDMKKLWKGLFYCV 60

Query: 61  WHADKVPVQSELINRLASLLLHLDLSLAVQYFSVFLLTMRREWAGIDALRLDKFYLLIRR 120
           WHADKVPVQSELINRLASLLLHLDLSLAVQYFSVFLLTMRREWAGIDALRLDKFYLLIRR
Sbjct: 61  WHADKVPVQSELINRLASLLLHLDLSLAVQYFSVFLLTMRREWAGIDALRLDKFYLLIRR 120

Query: 121 FLHQFFALLKKHSWDLELCRRLVQVLEERVYFNEDKFHGNGVNYQIASVFLEELRPFLPL 180
           FLHQFFALLKKHSWDLELCRRLVQVLEERVYFNEDKFHGNGVNYQIASVFLEELRPFLPL
Sbjct: 121 FLHQFFALLKKHSWDLELCRRLVQVLEERVYFNEDKFHGNGVNYQIASVFLEELRPFLPL 180

Query: 181 QKEVVDVLFKPFLLSMTKLPDKVLLGKIKSNLFDVILKKGKQLLESRKRGDDVDSVDDTV 240
           QKEVVDVLFKPFLLSMTKLPDKVLLGKIKSNLFDVILKKGKQLLESRKRGDDVDSVDDTV
Sbjct: 181 QKEVVDVLFKPFLLSMTKLPDKVLLGKIKSNLFDVILKKGKQLLESRKRGDDVDSVDDTV 240

Query: 241 VYGTVSLTNQFSTTFYELGSSPDCCQGNRKVLFAMHEEFQKLEKDFFSSGIEISFPDLQE 300
           VYGTVSLTNQFSTTFYELGSSPDCCQGNRKVLFAMHEEFQKLEKDFFSSGIEISFPDLQE
Sbjct: 241 VYGTVSLTNQFSTTFYELGSSPDCCQGNRKVLFAMHEEFQKLEKDFFSSGIEISFPDLQE 300

Query: 301 QDGDEVPTLVPISSIEEAPSEISLVDVDVGTESTDKALKKQKKSKKATDGSGKKKAKKAK 360
           QDGDEVPTLVPISSIEEAPSEISLVDVDVGTESTDKALKKQKKSKKATDGSGKKKAKKAK
Sbjct: 301 QDGDEVPTLVPISSIEEAPSEISLVDVDVGTESTDKALKKQKKSKKATDGSGKKKAKKAK 360

Query: 361 KAKKTTNGISDLVSENTPANKDNENIVVANGENSNNEQISDGNMITFDETVISNLQMQFE 420
           KAKKTTNGISDLVSENTPANKDNENIVVANGENSNNEQISDGNMITFDETVISNLQMQFE
Sbjct: 361 KAKKTTNGISDLVSENTPANKDNENIVVANGENSNNEQISDGNMITFDETVISNLQMQFE 420

Query: 421 RVAAEADFGKSTVSPVISTNGSVKKRKRAKNVGELQKHDAGLPSEAVAEGNTAAKSEEKS 480
           RVAAEADFGKSTVSPVISTNGSVKKRKRAKNVGELQKHDAGLPSEAVAEGNTAAKSEEKS
Sbjct: 421 RVAAEADFGKSTVSPVISTNGSVKKRKRAKNVGELQKHDAGLPSEAVAEGNTAAKSEEKS 480

Query: 481 VKKVRFSMKNNLVWKPHNPLPPESLRLPPSVTPRGSALKKGIPPGPILEFPATTKRTKRR 540
           VKKVRFSMKNNLVWKPHNPLPPESLRLPPSVTPRGSALKKGIPPGPILEFPATTKRTKRR
Sbjct: 481 VKKVRFSMKNNLVWKPHNPLPPESLRLPPSVTPRGSALKKGIPPGPILEFPATTKRTKRR 540

Query: 541 AVSMRTKNGVRSLPVKRLKKLKSKST 567
           AVSMRTKNGVRSLPVKRLKKLKSKST
Sbjct: 541 AVSMRTKNGVRSLPVKRLKKLKSKST 566

[Close]

BLAST of Cucsa.209350 vs. NCBI nr
Match: gi|659069592|ref|XP_008450828.1| (PREDICTED: ribosomal RNA processing protein 1 homolog isoform X1 [Cucumis melo])

HSP 1 Score: 1063.9 bits (2750), Expect = 9.6e-308
Identity = 540/566 (95.41%), Postives = 548/566 (96.82%), Query Frame = 1


Query: 1   MEEVVEGDQNFTSLVKLLASSNKATRDKTLRVIIKTWLPTQTSLSDGDMKKLWKGLFYCV 60
           MEEVVEGDQNFTSLVKLLASSNKATRDKTLRVIIKTWLPTQTSLSDGDMKKLWKGLFYCV
Sbjct: 1   MEEVVEGDQNFTSLVKLLASSNKATRDKTLRVIIKTWLPTQTSLSDGDMKKLWKGLFYCV 60

Query: 61  WHADKVPVQSELINRLASLLLHLDLSLAVQYFSVFLLTMRREWAGIDALRLDKFYLLIRR 120
           WHADKVPVQSELINRLASLLLHLDLSLAVQYFSVFLLTMRREWAGIDALRLDKFYLLIRR
Sbjct: 61  WHADKVPVQSELINRLASLLLHLDLSLAVQYFSVFLLTMRREWAGIDALRLDKFYLLIRR 120

Query: 121 FLHQFFALLKKHSWDLELCRRLVQVLEERVYFNEDKFHGNGVNYQIASVFLEELRPFLPL 180
           FLHQFFALLKKHSWDLELCR LVQVLEERV+F +DKFHGNGVNYQIASVFLEELRPFLPL
Sbjct: 121 FLHQFFALLKKHSWDLELCRCLVQVLEERVFFTDDKFHGNGVNYQIASVFLEELRPFLPL 180

Query: 181 QKEVVDVLFKPFLLSMTKLPDKVLLGKIKSNLFDVILKKGKQLLESRKRGDDVDSVDDTV 240
           QKEVVDVLFKPFLLSM KLPDKVL GKIKSNLFDVILK GKQLLESRKRGDD+DS DDT 
Sbjct: 181 QKEVVDVLFKPFLLSMAKLPDKVLFGKIKSNLFDVILKMGKQLLESRKRGDDIDSGDDTA 240

Query: 241 VYGTVSLTNQFSTTFYELGSSPDCCQGNRKVLFAMHEEFQKLEKDFFSSGIEISFPDLQE 300
           VYGT+SLTNQFSTTFYELGSSPDCCQGNRKVLFAMHEEFQKLEKDFFSSGIEISFPDLQE
Sbjct: 241 VYGTISLTNQFSTTFYELGSSPDCCQGNRKVLFAMHEEFQKLEKDFFSSGIEISFPDLQE 300

Query: 301 QDGDEVPTLVPISSIEEAPSEISLVDVDVGTESTDKALKKQKKSKKATDGSGKKKAKKAK 360
           QDGDEVPTLVPI S EEAPSEIS+VDVDV  ESTDKALKKQK+SKKATDGSGKKKAKKAK
Sbjct: 301 QDGDEVPTLVPILSEEEAPSEISMVDVDVDAESTDKALKKQKRSKKATDGSGKKKAKKAK 360

Query: 361 KAKKTTNGISDLVSENTPANKDNENIVVANGENSNNEQISDGNMITFDETVISNLQMQFE 420
           KAKKTTNGISDLVSEN+PANKDNENIVVANGENSNNEQISDGNMITFDETVISNLQMQFE
Sbjct: 361 KAKKTTNGISDLVSENSPANKDNENIVVANGENSNNEQISDGNMITFDETVISNLQMQFE 420

Query: 421 RVAAEADFGKSTVSPVISTNGSVKKRKRAKNVGELQKHDAGLPSEAVAEGNTAAKSEEKS 480
           +VAAEADFG S VSPVISTNGSVKKRKRAKNV ELQKHD  LPSEA AEGNTAAKSEEKS
Sbjct: 421 KVAAEADFGDSIVSPVISTNGSVKKRKRAKNVDELQKHDVALPSEAQAEGNTAAKSEEKS 480

Query: 481 VKKVRFSMKNNLVWKPHNPLPPESLRLPPSVTPRGSALKKGIPPGPILEFPATTKRTKRR 540
           VKKVRFSMKNNLVWKPHNPLPPESLRLPPSVTPRGSALKKGIPPGPILEFPATTKRTKRR
Sbjct: 481 VKKVRFSMKNNLVWKPHNPLPPESLRLPPSVTPRGSALKKGIPPGPILEFPATTKRTKRR 540

Query: 541 AVSMRTKNGVRSLPVKRLKKLKSKST 567
           AVSMRTK GVRSLPVKRLKKLKSKST
Sbjct: 541 AVSMRTKKGVRSLPVKRLKKLKSKST 566

[Close]

BLAST of Cucsa.209350 vs. NCBI nr
Match: gi|778667662|ref|XP_011648968.1| (PREDICTED: ribosomal RNA processing protein 1 homolog B isoform X2 [Cucumis sativus])

HSP 1 Score: 770.0 bits (1987), Expect = 2.9e-219
Identity = 390/390 (100.00%), Postives = 390/390 (100.00%), Query Frame = 1


Query: 1   MEEVVEGDQNFTSLVKLLASSNKATRDKTLRVIIKTWLPTQTSLSDGDMKKLWKGLFYCV 60
           MEEVVEGDQNFTSLVKLLASSNKATRDKTLRVIIKTWLPTQTSLSDGDMKKLWKGLFYCV
Sbjct: 1   MEEVVEGDQNFTSLVKLLASSNKATRDKTLRVIIKTWLPTQTSLSDGDMKKLWKGLFYCV 60

Query: 61  WHADKVPVQSELINRLASLLLHLDLSLAVQYFSVFLLTMRREWAGIDALRLDKFYLLIRR 120
           WHADKVPVQSELINRLASLLLHLDLSLAVQYFSVFLLTMRREWAGIDALRLDKFYLLIRR
Sbjct: 61  WHADKVPVQSELINRLASLLLHLDLSLAVQYFSVFLLTMRREWAGIDALRLDKFYLLIRR 120

Query: 121 FLHQFFALLKKHSWDLELCRRLVQVLEERVYFNEDKFHGNGVNYQIASVFLEELRPFLPL 180
           FLHQFFALLKKHSWDLELCRRLVQVLEERVYFNEDKFHGNGVNYQIASVFLEELRPFLPL
Sbjct: 121 FLHQFFALLKKHSWDLELCRRLVQVLEERVYFNEDKFHGNGVNYQIASVFLEELRPFLPL 180

Query: 181 QKEVVDVLFKPFLLSMTKLPDKVLLGKIKSNLFDVILKKGKQLLESRKRGDDVDSVDDTV 240
           QKEVVDVLFKPFLLSMTKLPDKVLLGKIKSNLFDVILKKGKQLLESRKRGDDVDSVDDTV
Sbjct: 181 QKEVVDVLFKPFLLSMTKLPDKVLLGKIKSNLFDVILKKGKQLLESRKRGDDVDSVDDTV 240

Query: 241 VYGTVSLTNQFSTTFYELGSSPDCCQGNRKVLFAMHEEFQKLEKDFFSSGIEISFPDLQE 300
           VYGTVSLTNQFSTTFYELGSSPDCCQGNRKVLFAMHEEFQKLEKDFFSSGIEISFPDLQE
Sbjct: 241 VYGTVSLTNQFSTTFYELGSSPDCCQGNRKVLFAMHEEFQKLEKDFFSSGIEISFPDLQE 300

Query: 301 QDGDEVPTLVPISSIEEAPSEISLVDVDVGTESTDKALKKQKKSKKATDGSGKKKAKKAK 360
           QDGDEVPTLVPISSIEEAPSEISLVDVDVGTESTDKALKKQKKSKKATDGSGKKKAKKAK
Sbjct: 301 QDGDEVPTLVPISSIEEAPSEISLVDVDVGTESTDKALKKQKKSKKATDGSGKKKAKKAK 360

Query: 361 KAKKTTNGISDLVSENTPANKDNENIVVAN 391
           KAKKTTNGISDLVSENTPANKDNENIVVAN
Sbjct: 361 KAKKTTNGISDLVSENTPANKDNENIVVAN 390

[Close]

BLAST of Cucsa.209350 vs. NCBI nr
Match: gi|659069594|ref|XP_008450836.1| (PREDICTED: ribosomal RNA processing protein 1 homolog B isoform X2 [Cucumis melo])

HSP 1 Score: 738.0 bits (1904), Expect = 1.2e-209
Identity = 372/390 (95.38%), Postives = 379/390 (97.18%), Query Frame = 1


Query: 1   MEEVVEGDQNFTSLVKLLASSNKATRDKTLRVIIKTWLPTQTSLSDGDMKKLWKGLFYCV 60
           MEEVVEGDQNFTSLVKLLASSNKATRDKTLRVIIKTWLPTQTSLSDGDMKKLWKGLFYCV
Sbjct: 1   MEEVVEGDQNFTSLVKLLASSNKATRDKTLRVIIKTWLPTQTSLSDGDMKKLWKGLFYCV 60

Query: 61  WHADKVPVQSELINRLASLLLHLDLSLAVQYFSVFLLTMRREWAGIDALRLDKFYLLIRR 120
           WHADKVPVQSELINRLASLLLHLDLSLAVQYFSVFLLTMRREWAGIDALRLDKFYLLIRR
Sbjct: 61  WHADKVPVQSELINRLASLLLHLDLSLAVQYFSVFLLTMRREWAGIDALRLDKFYLLIRR 120

Query: 121 FLHQFFALLKKHSWDLELCRRLVQVLEERVYFNEDKFHGNGVNYQIASVFLEELRPFLPL 180
           FLHQFFALLKKHSWDLELCR LVQVLEERV+F +DKFHGNGVNYQIASVFLEELRPFLPL
Sbjct: 121 FLHQFFALLKKHSWDLELCRCLVQVLEERVFFTDDKFHGNGVNYQIASVFLEELRPFLPL 180

Query: 181 QKEVVDVLFKPFLLSMTKLPDKVLLGKIKSNLFDVILKKGKQLLESRKRGDDVDSVDDTV 240
           QKEVVDVLFKPFLLSM KLPDKVL GKIKSNLFDVILK GKQLLESRKRGDD+DS DDT 
Sbjct: 181 QKEVVDVLFKPFLLSMAKLPDKVLFGKIKSNLFDVILKMGKQLLESRKRGDDIDSGDDTA 240

Query: 241 VYGTVSLTNQFSTTFYELGSSPDCCQGNRKVLFAMHEEFQKLEKDFFSSGIEISFPDLQE 300
           VYGT+SLTNQFSTTFYELGSSPDCCQGNRKVLFAMHEEFQKLEKDFFSSGIEISFPDLQE
Sbjct: 241 VYGTISLTNQFSTTFYELGSSPDCCQGNRKVLFAMHEEFQKLEKDFFSSGIEISFPDLQE 300

Query: 301 QDGDEVPTLVPISSIEEAPSEISLVDVDVGTESTDKALKKQKKSKKATDGSGKKKAKKAK 360
           QDGDEVPTLVPI S EEAPSEIS+VDVDV  ESTDKALKKQK+SKKATDGSGKKKAKKAK
Sbjct: 301 QDGDEVPTLVPILSEEEAPSEISMVDVDVDAESTDKALKKQKRSKKATDGSGKKKAKKAK 360

Query: 361 KAKKTTNGISDLVSENTPANKDNENIVVAN 391
           KAKKTTNGISDLVSEN+PANKDNENIVVAN
Sbjct: 361 KAKKTTNGISDLVSENSPANKDNENIVVAN 390

[Close]

BLAST of Cucsa.209350 vs. NCBI nr
Match: gi|694445611|ref|XP_009349232.1| (PREDICTED: ribosomal RNA processing protein 1 homolog isoform X1 [Pyrus x bretschneideri])

HSP 1 Score: 604.0 bits (1556), Expect = 2.7e-169
Identity = 323/561 (57.58%), Postives = 401/561 (71.48%), Query Frame = 1


Query: 13  SLVKLLASSNKATRDKTLRVIIKTWLPTQTSLSDGDMKKLWKGLFYCVWHADKVPVQSEL 72
           SL+K LAS NK++RD+ LRV++KTWLP Q +L D  MKKLWKGLFYC+WHADKVPVQ++L
Sbjct: 27  SLIKQLASCNKSSRDRALRVLLKTWLPAQLNLQDDHMKKLWKGLFYCLWHADKVPVQTQL 86

Query: 73  INRLASLLLHLDLSLAVQYFSVFLLTMRREWAGIDALRLDKFYLLIRRFLHQFFALLKKH 132
           I+RL+SL+L L L L++ YFSVFL TMRREW GIDALRLDKFYL IRRF+  FF L+K +
Sbjct: 87  IDRLSSLVLSLHLQLSLHYFSVFLHTMRREWPGIDALRLDKFYLSIRRFMTSFFTLMKNN 146

Query: 133 SWDLELCRRLVQVLEERVYFNEDKFHGNGVNYQIASVFLEELRPFLPLQKEVVDVLFKPF 192
            WDLEL +RL+ VLEER +F +DK  GNGVNY IASVFLEELRPFLP++ EV++VL   F
Sbjct: 147 LWDLELVKRLMGVLEERTFFADDKCLGNGVNYHIASVFLEELRPFLPIKAEVLEVLLVGF 206

Query: 193 LLSMTKLPDKVLLGKIKSNLFDVILKKGKQLLESRKRGDDVDSVDDTVVYGTVSLTNQFS 252
           +    K+PDKVLLGKIKSNLFDV+L   K+LLE +K G+D+DS D+ VV+GTV+L   F+
Sbjct: 207 IRVSAKVPDKVLLGKIKSNLFDVLLGAAKRLLEVKKSGEDLDSSDEFVVFGTVALKMGFA 266

Query: 253 TTFYELGSSPDCCQGNRKVLFAMHEEFQKLEKDFFSSGIEISFPDLQEQDGDEVPTLVPI 312
           + FYE GSSP+CCQGNRKVLF++HEEF  LEK+  SSG+EIS PD+   D +EVP LVP+
Sbjct: 267 SKFYESGSSPECCQGNRKVLFSLHEEFLMLEKELESSGVEISLPDVVYHDDEEVPDLVPL 326

Query: 313 SSIEEAPSEISLVDVDVGTESTDKALKKQKKSKKATDGSGKKKAKKAKKAKKTT--NGIS 372
           +  E   S     ++ +   S  K LKK KK++K T G+  K  KK KK KK    NG  
Sbjct: 327 AGEEMDVSNSEPAEIVIANGSAGKRLKKCKKNEKDTGGADTKAEKKKKKKKKNKEGNGTL 386

Query: 373 DLVSENTPANKDNENIVVANGENSNNEQISDGNMITFDETVISNLQMQFERVAAEA---- 432
           D  SE    ++DNE IV ANGE S++++++D +    D+ VISNLQMQFE++AAEA    
Sbjct: 387 DSDSEKNSTDRDNE-IVAANGEISDDQEVTDADAFKLDDNVISNLQMQFEKIAAEAGLDD 446

Query: 433 DFGKSTVSPVISTNGSV-KKRKRAKNVGELQKHDAGLPSEAVAEGNTAAKSEEKSVKKVR 492
           D   +   P++S  G + KKRKR K              E  AEG T AKS EKS +KV+
Sbjct: 447 DVPSTCDMPLVSDKGPISKKRKRMKK-----------SIEEDAEGGTNAKSGEKSARKVK 506

Query: 493 FSMKNNLVWKPHNPLPPESLRLPPSVTPRGSALKKGIPPGPILEFPATTKRTKRRAVSMR 552
           FSMKNNLVWKP  PLPP+ LRLPPS TPRGSALKKG+PPGPI E P  TK+ K   V + 
Sbjct: 507 FSMKNNLVWKPQTPLPPQDLRLPPSATPRGSALKKGVPPGPIWEMPTPTKKVKMVRV-VA 566

Query: 553 TKNGVRSLPVKRLKKLKSKST 567
            K   +S  VKR+KKLKS+ T
Sbjct: 567 VKKARKS--VKRVKKLKSRPT 572

The following BLAST results are available for this feature:

BLAST of Cucsa.209350 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RRP1B_MOUSE	9.8e-26	35.09	Ribosomal RNA processing protein 1 homolog B OS=Mus musculus GN=Rrp1b PE=1 SV=2	[more]
RRP1B_HUMAN	7.0e-24	32.17	Ribosomal RNA processing protein 1 homolog B OS=Homo sapiens GN=RRP1B PE=1 SV=3	[more]
RRP1_HUMAN	2.3e-22	31.22	Ribosomal RNA processing protein 1 homolog A OS=Homo sapiens GN=RRP1 PE=1 SV=1	[more]
RRP1_CAEEL	2.3e-22	24.44	Ribosomal RNA processing protein 1 homolog OS=Caenorhabditis elegans GN=C47E12.7...	[more]
RRP1_MOUSE	2.9e-22	32.13	Ribosomal RNA processing protein 1 homolog A OS=Mus musculus GN=Rrp1 PE=1 SV=2	[more]

BLAST of Cucsa.209350 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LGX3_CUCSA	0.0e+00	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G062650 PE=4 SV=1	[more]
A0A067F3M5_CITSI	7.5e-166	54.92	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g008164mg PE=4 SV=1	[more]
V4WI81_9ROSI	1.3e-165	55.09	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10010385mg PE=4 SV=1	[more]
A0A061FFL5_THECC	1.8e-164	55.24	Ribosomal RNA processing protein 1 B, putative OS=Theobroma cacao GN=TCM_034656 ...	[more]
F6GXI5_VITVI	1.2e-163	56.71	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0052g00510 PE=4 SV=...	[more]

BLAST of Cucsa.209350 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G20600.1	5.3e-139	48.68	FUNCTIONS IN: molecular_function unknown	[more]

BLAST of Cucsa.209350 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449465344\|ref\|XP_004150388.1\|	0.0e+00	100.00	PREDICTED: ribosomal RNA processing protein 1 homolog isoform X1 [Cucumis sativu...	[more]
gi\|659069592\|ref\|XP_008450828.1\|	9.6e-308	95.41	PREDICTED: ribosomal RNA processing protein 1 homolog isoform X1 [Cucumis melo]	[more]
gi\|778667662\|ref\|XP_011648968.1\|	2.9e-219	100.00	PREDICTED: ribosomal RNA processing protein 1 homolog B isoform X2 [Cucumis sati...	[more]
gi\|659069594\|ref\|XP_008450836.1\|	1.2e-209	95.38	PREDICTED: ribosomal RNA processing protein 1 homolog B isoform X2 [Cucumis melo...	[more]
gi\|694445611\|ref\|XP_009349232.1\|	2.7e-169	57.58	PREDICTED: ribosomal RNA processing protein 1 homolog isoform X1 [Pyrus x bretsc...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR010301	Nop52

Vocabulary: **Cellular Component**
Term	Definition
GO:0030688	preribosome, small subunit precursor

Vocabulary: **Biological Process**
Term	Definition
GO:0006364	rRNA processing

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006364	rRNA processing
cellular_component	GO:0030688	preribosome, small subunit precursor
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.209350.1	Cucsa.209350.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010301	Nucleolar, Nop52	PANTHER	PTHR13026	NNP-1 PROTEIN NOVEL NUCLEAR PROTEIN 1 NOP52	coord: 14..565 score: 8.4E
IPR010301	Nucleolar, Nop52	PFAM	PF05997	Nop52	coord: 13..214 score: 1.7
None	No IPR available	PANTHER	PTHR13026:SF0	RIBOSOMAL RNA PROCESSING PROTEIN 1 HOMOLOG	coord: 14..565 score: 8.4E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.209350	CmoCh12G009260	Cucurbita moschata (Rifu)	cgycmoB0613
Cucsa.209350	Cp4.1LG07g07670	Cucurbita pepo (Zucchini)	cgycpeB0584

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None