Cucsa.201730 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.201730
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionTrafficking particle complex subunit 1
Locationscaffold01376 : 8887 .. 12301 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCGATTTGCTTAGGCCTTTCACAAACGACGTTGGTTCACTCTGTCCTGGTCGTAGGGGTCTCCGGTGCCTTAAGGCTCCGATCTGCTGACGTTGTTACCGGCAATCATTGCGTGACGAATCAAGAGCTTCGTCGTTGAATTGATCGCTTTCTTTACTTTGTAGTCTCTGCTCTCTGAGGTATCTTTCTAGTCTCCATTGTTTGATTTTGATGCTTCTTCTTGAATCTGTCACCGTCCAGCTCATTGCTGGTTATCTCTCCATTTCCCCCTGCTCACAGTCTCTTATACGATCCATAAGTAAAATCCATTTTCCTTGGGATTATGTATGAATAGGACTCCCAATTTTACACTAGATTTGTTTCTAACTATATTGAGTGGTTCTGTAGAGAGCCCAAAGGGAAATGCATCTGGGTACAGCTTCTTGCTTTAGTGAATCCTGATTTGGGTCGGGTTAGATTTTACCTGTTGACAATTCGCTATTTTATTTTTAACCTCAATGAATTATTAGGAATGATTGAATTATTAGTTGCTTTGCTAGGCAATTGATTGTAGAGTTGAGTGGAAATGTTGGGGTTTTGTTAGAATCTTAGATTTCTTAGATCATTTCATATGACAGTTGATTTGATTCAGTTTGGTTTATTCCAGAAATCATGCAGTTCTTTGGTGGGTCAGAAATTAGTCCTTCGCCTCCGGTACCAACAGCAACTGGAAACAATGTTCATATGATGTATATTTTCAATAGGAATGGAGTTTGCTTGTTCTATAGGGAGTGGAATCGGCCTCTCCGGACATTGAATCCCCAGCAAGACCACAAACTTATGTTTGGTTTGCTCTTCTCCCTTAAATCCTTTACTGCCAAGATGGACCCAACCAGGTTTATGTTTCTTCCTTCTTTGGGAAACTACTTTAGTTTATGGTGTGGCTAGTATATGTAGTGATCCAACCAGATAGGAGATTAATGCAAACCATAATCTTAATAACGTGACAAATGCATTGCCCTTTTATGGTTGGTGGCAATAACTAGTAAGATGTCTAATTTGATTGTAGATTTTGATTTTGATCTTTCAAAGTATTAACAACTTACTGGAAAATGATGAGCTGCTTTTGGGAGTTAGGTTTTGAAGCGATAACTTTTTTtACTTTCTTTGATACAGTGCTGACAAAGGAAATCTTGGCGTGCCTCAGTTACCTGGCCAAGGTTGTTCGTTTCACAGTTTTCGTACTAATACCTACAAGCTCAGTTTTACTGAAACTCCATCAGGGATAAAGGTTTCCTTAACCCTCCTTCTTCCGTTCTTGTTTATGTTTTCCATAGTAGCTTTATGCATGTCTACTTGAATTGTTAAAATACTGAACTTGATGTATGACTATGGCATAATCGAAGCGGACTACATATGAATTATTGAGATTTAATGAAACCAGTATTTATTTTATGTCATGGACTTGTTTATTTATTGTTATTGCCAAGGTATATGGGAGTTTTAAAGTATCCTTCTCTCTGAACTTGTTGTGTCACATGGATAATTtAAGTTTTtATTTGTAACCTCGCAAAAAaTGATCTTGCTTTTCTTTCTTCTTCTTAGAAAaTTCATTTTCCTTGGCGACGATTAGTAGTTTTAACCAATATATATATATATATATATATATATATATATATATaTAtATTATTntCTtNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaTATATatATATATATATATaTATATATATATATATATATATTTATTTGCTTCTTGTTTTACACTTGAAGAATTAAAGTTGATCTTTTGGGAGAAGCCATGTAAAGCCGCTATTTTAAAATTGTTTCTGTTTTGAAAAAGAATTAACCAAATGAGGAAAATTGGGATCACTGTGACTATGGGGTAAATTAATTTTAAGTTTGATGGATCATTTCTTTGTTTTCAGATTATTCTGGTTACCCATCCTAGAACCGGTGATCTGAGGGACCCGTTGAAGTACATCTACAACTTGTATGTTGAATATGTAGTGAAAAATCCAATCTACAGTCCAGGAACTCCAATCAGGTAAACTGTTAGCTTTGGTTGATGCATATGTTCTATATACCAAACGTAGTAATTTATCTCAAAGAAACTCCGTTTGAAATCTTGCTGAATCAAGTCAATATCTTTGATGAATTTGAATTTGTAATGCATGCATTCATTGGTTTCAATTTACAAAAGATTAAATGGCGTCTGGGGAAAGGGAACTTATTATTGGTTATTGACTTTAATCATAACTTATGTAAGTCTGTCCCAGAGGCCCTTTCTGGGATATTTTAGGCCTTACTAGATTCTCCCTTTAGACCACTTCAAATCCTGGGGTTGAGCTTGGTTTCAATATGATTTCTATGATCTCACGAACATCTATGTATGGTTACCACATGTTAGTAGTTTAGATGTACTGATATTGAATGGTAGCACATCGTCCTTCTTTTCTACTTCCAAAGAAAAAGAGTAAGAAAACTATCACCCCCTAAAGATGGTAAGATTTTTGGAGATTTAACTGAGCTATAGCCTATAGGGCTATAATGAAATTGAAAATTTTAAATCATATAAGCGTAGTTGAAACCAAAGTCAAACCATATGGACAATTCAATCCTTCTTTTATGTGGGAGAACTTTTGTTACATTCTCCTGTTTACTCTCTTTAACAAAAAATTTGAAATGTTTCAAAATCTTCTTTACAGACTTAACCCAACCTCAAACGATTCATGCTTTTGTTTGCTATGTTATCGTTCTTATGGTGAAAATAAAGTTAATGTATGTTTGTCCTCGCAACACAATATCAACTCTCCCTTGATTTTGCTTTCTGCAGGTGTGAGCTATTCAATACAAGTCTTGACCAATATGTAAGAACTATATTGTAGAAATCAGAGGTAGCGACTACTCTGCCGATTTAGTTTCATTCAATTTGTATGGTTTGTCTATCTTTTGTCTACGAATGAATGTGATTCACTGGATAATGGTGCAGTTGCAGGCTATTAAAATGCCTACATGGGAGTTTCTATTTGTTTTCTATTGGTTGGACTGTAGACAGTGCACCGGTATGAATTATTCTAGCTTATCTTTTACCTTTCCCCCTTTCGTCTCCCAGCATTCTATGGTAACTTCTCTGTGATAGTAGTGGTGGAAGAAAAATGAAAAAAa

mRNA sequence

TCGATTTGCTTAGGCCTTTCACAAACGACGTTGGTTCACTCTGTCCTGGTCGTAGGGGTCTCCGGTGCCTTAAGGCTCCGATCTGCTGACGTTGTTACCGGCAATCATTGCGTGACGAATCAAGAGCTTCGTCGTTGAATTGATCGCTTTCTTTACTTTGTAGTCTCTGCTCTCTGAGAAATCATGCAGTTCTTTGGTGGGTCAGAAATTAGTCCTTCGCCTCCGGTACCAACAGCAACTGGAAACAATGTTCATATGATGTATATTTTCAATAGGAATGGAGTTTGCTTGTTCTATAGGGAGTGGAATCGGCCTCTCCGGACATTGAATCCCCAGCAAGACCACAAACTTATGTTTGGTTTGCTCTTCTCCCTTAAATCCTTTACTGCCAAGATGGACCCAACCAGTGCTGACAAAGGAAATCTTGGCGTGCCTCAGTTACCTGGCCAAGGTTGTTCGTTTCACAGTTTTCGTACTAATACCTACAAGCTCAGTTTTACTGAAACTCCATCAGGGATAAAGATTATTCTGGTTACCCATCCTAGAACCGGTGATCTGAGGGACCCGTTGAAGTACATCTACAACTTGTATGTTGAATATGTAGTGAAAAATCCAATCTACAGTCCAGGAACTCCAATCAGGTGTGAGCTATTCAATACAAGTCTTGACCAATATGTAAGAACTATATTGTAGAAATCAGAGTTGCAGGCTATTAAAATGCCTACATGGGAGTTTCTATTTGTTTTCTATTGGTTGGACTGTAGACAGTGCACCGGTATGAATTATTCTAGCTTATCTTTTACCTTTCCCCCTTTCGTCTCCCAGCATTCTATGGTAACTTCTCTGTGATAGTAGTGGTGGAAGAAAAATGAAAAAAA

Coding sequence (CDS)

ATGCAGTTCTTTGGTGGGTCAGAAATTAGTCCTTCGCCTCCGGTACCAACAGCAACTGGAAACAATGTTCATATGATGTATATTTTCAATAGGAATGGAGTTTGCTTGTTCTATAGGGAGTGGAATCGGCCTCTCCGGACATTGAATCCCCAGCAAGACCACAAACTTATGTTTGGTTTGCTCTTCTCCCTTAAATCCTTTACTGCCAAGATGGACCCAACCAGTGCTGACAAAGGAAATCTTGGCGTGCCTCAGTTACCTGGCCAAGGTTGTTCGTTTCACAGTTTTCGTACTAATACCTACAAGCTCAGTTTTACTGAAACTCCATCAGGGATAAAGATTATTCTGGTTACCCATCCTAGAACCGGTGATCTGAGGGACCCGTTGAAGTACATCTACAACTTGTATGTTGAATATGTAGTGAAAAATCCAATCTACAGTCCAGGAACTCCAATCAGGTGTGAGCTATTCAATACAAGTCTTGACCAATATGTAAGAACTATATTGTAG

Protein sequence

MQFFGGSEISPSPPVPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGLLFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHPRTGDLRDPLKYIYNLYVEYVVKNPIYSPGTPIRCELFNTSLDQYVRTIL*
Homology
[Close]
BLAST of Cucsa.201730 vs. Swiss-Prot
Match: TPPC1_MOUSE (Trafficking protein particle complex subunit 1 OS=Mus musculus GN=Trappc1 PE=1 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 8.2e-29
Identity = 66/148 (44.59%), Postives = 97/148 (65.54%), Query Frame = 1 

Query: 23  VHMMYIFNRNGVCLFYREWNRPLRTLNP-QQDHKLMFGLLFSLKSFTAKMDPTSADKGNL 82
           VH +Y+F+RNGVCL Y EW+R  +   P ++++KLM+G+LFS++SF +KM P     G  
Sbjct: 3   VHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDG-- 62

Query: 83  GVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHPRTGDLRDPLKYIYN-LYVEYV 142
                      F SF+T+ YKL + ETP+GIK+++ T    G +RD L +IY+ LYVE+V
Sbjct: 63  -----------FLSFQTSRYKLHYYETPTGIKVVMNTDLGVGPIRDVLHHIYSALYVEFV 122

Query: 143 VKNPIYSPGTPIRCELFNTSLDQYVRTI 169
           VKNP+   G  ++ ELF + LD YVR++
Sbjct: 123 VKNPLCPLGQTVQSELFRSRLDSYVRSL 137

[Close]
BLAST of Cucsa.201730 vs. Swiss-Prot
Match: TPPC1_RAT (Trafficking protein particle complex subunit 1 OS=Rattus norvegicus GN=Trappc1 PE=2 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 8.2e-29
Identity = 66/148 (44.59%), Postives = 97/148 (65.54%), Query Frame = 1 

Query: 23  VHMMYIFNRNGVCLFYREWNRPLRTLNP-QQDHKLMFGLLFSLKSFTAKMDPTSADKGNL 82
           VH +Y+F+RNGVCL Y EW+R  +   P ++++KLM+G+LFS++SF +KM P     G  
Sbjct: 3   VHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDG-- 62

Query: 83  GVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHPRTGDLRDPLKYIYN-LYVEYV 142
                      F SF+T+ YKL + ETP+GIK+++ T    G +RD L +IY+ LYVE+V
Sbjct: 63  -----------FLSFQTSRYKLHYYETPTGIKVVMNTDLGVGPIRDVLHHIYSALYVEFV 122

Query: 143 VKNPIYSPGTPIRCELFNTSLDQYVRTI 169
           VKNP+   G  ++ ELF + LD YVR++
Sbjct: 123 VKNPLCPLGQTVQSELFRSRLDSYVRSL 137

[Close]
BLAST of Cucsa.201730 vs. Swiss-Prot
Match: TPPC1_DICDI (Trafficking protein particle complex subunit 1 OS=Dictyostelium discoideum GN=trappc1-1 PE=3 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 8.2e-29
Identity = 59/145 (40.69%), Postives = 92/145 (63.45%), Query Frame = 1 

Query: 23  VHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGLLFSLKSFTAKMDPTSADKGNLG 82
           ++ +YIFN++G C++Y +WN+  ++ N  +D KL+FG+L+SLK+F     P   D     
Sbjct: 2   IYNIYIFNKDGTCIYYEDWNKKKQSQNQSEDQKLLFGMLYSLKAFITSSSPKKID----- 61

Query: 83  VPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHPRTGDLRDPLKYIYN-LYVEYVV 142
                     FH ++T+TYKL + ET S IK I+++ P   DLRD LK IY+ ++VEYV+
Sbjct: 62  ------DKTGFHCYKTSTYKLHYYETLSCIKFIIMSDPNVPDLRDDLKKIYSQIFVEYVI 121

Query: 143 KNPIYSPGTPIRCELFNTSLDQYVR 167
           KNPIY  GT ++C+ F   L+ Y++
Sbjct: 122 KNPIYKHGTTVKCDTFINQLNLYLK 135

[Close]
BLAST of Cucsa.201730 vs. Swiss-Prot
Match: TPPC1_BOVIN (Trafficking protein particle complex subunit 1 OS=Bos taurus GN=TRAPPC1 PE=2 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 5.3e-28
Identity = 65/148 (43.92%), Postives = 96/148 (64.86%), Query Frame = 1 

Query: 23  VHMMYIFNRNGVCLFYREWNRPLRTLNP-QQDHKLMFGLLFSLKSFTAKMDPTSADKGNL 82
           VH +Y+F+RNGVCL Y EW+R  +   P ++++KLM+G+LFS++SF +KM P     G  
Sbjct: 3   VHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDG-- 62

Query: 83  GVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHPRTGDLRDPLKYIYN-LYVEYV 142
                      F +F+T+ YKL + ETP+GIK+++ T    G +RD L +IY+ LYVE V
Sbjct: 63  -----------FLAFQTSRYKLHYYETPTGIKVVMNTDLGVGPIRDVLHHIYSALYVELV 122

Query: 143 VKNPIYSPGTPIRCELFNTSLDQYVRTI 169
           VKNP+   G  ++ ELF + LD YVR++
Sbjct: 123 VKNPLCPLGQTVQSELFRSRLDSYVRSL 137

[Close]
BLAST of Cucsa.201730 vs. Swiss-Prot
Match: TPPC1_HUMAN (Trafficking protein particle complex subunit 1 OS=Homo sapiens GN=TRAPPC1 PE=1 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 5.3e-28
Identity = 65/148 (43.92%), Postives = 96/148 (64.86%), Query Frame = 1 

Query: 23  VHMMYIFNRNGVCLFYREWNRPLRTLNP-QQDHKLMFGLLFSLKSFTAKMDPTSADKGNL 82
           VH +Y+F+RNGVCL Y EW+R  +   P ++++KLM+G+LFS++SF +KM P     G  
Sbjct: 3   VHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDG-- 62

Query: 83  GVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHPRTGDLRDPLKYIYN-LYVEYV 142
                      F +F+T+ YKL + ETP+GIK+++ T    G +RD L +IY+ LYVE V
Sbjct: 63  -----------FLAFQTSRYKLHYYETPTGIKVVMNTDLGVGPIRDVLHHIYSALYVELV 122

Query: 143 VKNPIYSPGTPIRCELFNTSLDQYVRTI 169
           VKNP+   G  ++ ELF + LD YVR++
Sbjct: 123 VKNPLCPLGQTVQSELFRSRLDSYVRSL 137

[Close]
BLAST of Cucsa.201730 vs. TrEMBL
Match: A0A0A0KM26_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G139910 PE=4 SV=1)

HSP 1 Score: 356.3 bits (913), Expect = 2.1e-95
Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 1 

Query: 1   MQFFGGSEISPSPPVPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60
           MQFFGGSEISPSPPVPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL
Sbjct: 1   MQFFGGSEISPSPPVPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60

Query: 61  LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120
           LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP
Sbjct: 61  LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120

Query: 121 RTGDLRDPLKYIYNLYVEYVVKNPIYSPGTPIRCELFNTSLDQYVRTIL 170
           RTGDLRDPLKYIYNLYVEYVVKNPIYSPGTPIRCELFNTSLDQYVRTIL
Sbjct: 121 RTGDLRDPLKYIYNLYVEYVVKNPIYSPGTPIRCELFNTSLDQYVRTIL 169

[Close]
BLAST of Cucsa.201730 vs. TrEMBL
Match: A0A061G8H7_THECC (SNARE-like superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_015275 PE=4 SV=1)

HSP 1 Score: 331.6 bits (849), Expect = 5.5e-88
Identity = 154/168 (91.67%), Postives = 160/168 (95.24%), Query Frame = 1 

Query: 1   MQFFGGSEISPSPPVPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60
           MQFFGGSEISPSPPVPT TGNN HMMY+FNRNGVCL YREWNRPL TLNPQQDHKLMFGL
Sbjct: 1   MQFFGGSEISPSPPVPTTTGNNAHMMYVFNRNGVCLLYREWNRPLHTLNPQQDHKLMFGL 60

Query: 61  LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120
           LFSLKS TAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSF ETPSGIKIILVTHP
Sbjct: 61  LFSLKSLTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFMETPSGIKIILVTHP 120

Query: 121 RTGDLRDPLKYIYNLYVEYVVKNPIYSPGTPIRCELFNTSLDQYVRTI 169
           RTGDLR+PLKYIYNLYVEYV KNP+Y+PGT IRCELFNT+LDQYVR+I
Sbjct: 121 RTGDLREPLKYIYNLYVEYVAKNPLYTPGTSIRCELFNTALDQYVRSI 168

[Close]
BLAST of Cucsa.201730 vs. TrEMBL
Match: B9MX74_POPTR (Synbindin family protein OS=Populus trichocarpa GN=POPTR_0017s00860g PE=4 SV=1)

HSP 1 Score: 323.9 bits (829), Expect = 1.1e-85
Identity = 150/168 (89.29%), Postives = 158/168 (94.05%), Query Frame = 1 

Query: 1   MQFFGGSEISPSPPVPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60
           MQFFGGS+ISPSPP PTA+GNN HMMY+FNRNGVCL YREWNRPL TLN QQDHKLMFGL
Sbjct: 1   MQFFGGSDISPSPPAPTASGNNAHMMYVFNRNGVCLLYREWNRPLHTLNAQQDHKLMFGL 60

Query: 61  LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120
           LFSLKS TAKMDPTS DKGNLGVPQLPGQGCSFHSFRTNTYKLSF ETPSGIKIIL+THP
Sbjct: 61  LFSLKSLTAKMDPTSMDKGNLGVPQLPGQGCSFHSFRTNTYKLSFMETPSGIKIILITHP 120

Query: 121 RTGDLRDPLKYIYNLYVEYVVKNPIYSPGTPIRCELFNTSLDQYVRTI 169
           +TGDLR+ LKYIYNLYVEYVVKNPIY+PG PIRCELFNTSLDQYVR+I
Sbjct: 121 KTGDLRESLKYIYNLYVEYVVKNPIYTPGAPIRCELFNTSLDQYVRSI 168

[Close]
BLAST of Cucsa.201730 vs. TrEMBL
Match: A0A0D3CPY0_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 322.8 bits (826), Expect = 2.5e-85
Identity = 150/168 (89.29%), Postives = 160/168 (95.24%), Query Frame = 1 

Query: 1   MQFFGGSEISPSPPVPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60
           MQFFGGSEISPSPPVPTA+GNN HMMY+FNRNGVCL Y+EWNRPL TLNPQQDHKLMFGL
Sbjct: 1   MQFFGGSEISPSPPVPTASGNNAHMMYVFNRNGVCLLYKEWNRPLHTLNPQQDHKLMFGL 60

Query: 61  LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120
           LFSLKS TAKMDPT+ADKGNLGVPQLPGQGCSFHSFRTNTYKLSF ETPSGIKIILVTHP
Sbjct: 61  LFSLKSLTAKMDPTNADKGNLGVPQLPGQGCSFHSFRTNTYKLSFMETPSGIKIILVTHP 120

Query: 121 RTGDLRDPLKYIYNLYVEYVVKNPIYSPGTPIRCELFNTSLDQYVRTI 169
           +TGDLR+ LKYIY LYVEYVVKNPIYSPG+PI+ ELFNT+LDQYVR+I
Sbjct: 121 KTGDLRESLKYIYGLYVEYVVKNPIYSPGSPIKSELFNTALDQYVRSI 168

[Close]
BLAST of Cucsa.201730 vs. TrEMBL
Match: M4DQV4_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1)

HSP 1 Score: 322.8 bits (826), Expect = 2.5e-85
Identity = 150/168 (89.29%), Postives = 160/168 (95.24%), Query Frame = 1 

Query: 1   MQFFGGSEISPSPPVPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60
           MQFFGGSEISPSPPVPTA+GNN HMMY+FNRNGVCL Y+EWNRPL TLNPQQDHKLMFGL
Sbjct: 1   MQFFGGSEISPSPPVPTASGNNAHMMYVFNRNGVCLLYKEWNRPLHTLNPQQDHKLMFGL 60

Query: 61  LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120
           LFSLKS TAKMDPT+ADKGNLGVPQLPGQGCSFHSFRTNTYKLSF ETPSGIKIILVTHP
Sbjct: 61  LFSLKSLTAKMDPTNADKGNLGVPQLPGQGCSFHSFRTNTYKLSFMETPSGIKIILVTHP 120

Query: 121 RTGDLRDPLKYIYNLYVEYVVKNPIYSPGTPIRCELFNTSLDQYVRTI 169
           +TGDLR+ LKYIY LYVEYVVKNPIYSPG+PI+ ELFNT+LDQYVR+I
Sbjct: 121 KTGDLRESLKYIYGLYVEYVVKNPIYSPGSPIKSELFNTALDQYVRSI 168

[Close]
BLAST of Cucsa.201730 vs. TAIR10
Match: AT1G51160.1 (AT1G51160.1 SNARE-like superfamily protein)

HSP 1 Score: 321.2 bits (822), Expect = 3.7e-88
Identity = 149/168 (88.69%), Postives = 160/168 (95.24%), Query Frame = 1 

Query: 1   MQFFGGSEISPSPPVPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60
           MQFFGGSEISPSPPVPTA+GNN HMMY+FNRNGVCL Y+EWNRPL TLNPQQDHKLMFGL
Sbjct: 1   MQFFGGSEISPSPPVPTASGNNAHMMYVFNRNGVCLLYKEWNRPLHTLNPQQDHKLMFGL 60

Query: 61  LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120
           LFSLKS TAKMDP +ADKGNLGVPQLPGQGCSFHSFRTNTYKLSF ETPSGIKIILVTHP
Sbjct: 61  LFSLKSLTAKMDPVNADKGNLGVPQLPGQGCSFHSFRTNTYKLSFMETPSGIKIILVTHP 120

Query: 121 RTGDLRDPLKYIYNLYVEYVVKNPIYSPGTPIRCELFNTSLDQYVRTI 169
           +TGDLR+ LKYIY+LYVEYVVKNPIYSPG+PI+ ELFNT+LDQYVR+I
Sbjct: 121 KTGDLRESLKYIYSLYVEYVVKNPIYSPGSPIKSELFNTALDQYVRSI 168

[Close]
BLAST of Cucsa.201730 vs. TAIR10
Match: AT5G02280.1 (AT5G02280.1 SNARE-like superfamily protein)

HSP 1 Score: 71.2 bits (173), Expect = 6.7e-13
Identity = 43/146 (29.45%), Postives = 71/146 (48.63%), Query Frame = 1 

Query: 23  VHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGLLFSLKSFTAKMDPTSADKGNLG 82
           ++ +YI N++G  +FY++     R      D   +  L  S+ + + ++ P +       
Sbjct: 4   IYSLYIINKSGGLIFYKDCGTKGRM--DTNDSLRVASLWHSMHAISQQLSPVN------- 63

Query: 83  VPQLPGQGCS-FHSFRTNTYKLSFTETPSGIKIILVTHPRTGDLRDPLKYIYNLYVEYVV 142
                  GCS       +T+ L   ++  G K  +V  P T  +   L+YIY LY +YV+
Sbjct: 64  -------GCSGIELLEADTFDLHCFQSLPGTKFFVVCEPGTPHMESLLRYIYELYTDYVL 123

Query: 143 KNPIYSPGTPIRCELFNTSLDQYVRT 168
           KNP Y    PIRCELF+ +L Q V++
Sbjct: 124 KNPFYEIEMPIRCELFDINLTQAVQS 133

[Close]
BLAST of Cucsa.201730 vs. NCBI nr
Match: gi|449456339|ref|XP_004145907.1| (PREDICTED: trafficking protein particle complex subunit 1 [Cucumis sativus])

HSP 1 Score: 356.3 bits (913), Expect = 3.0e-95
Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 1 

Query: 1   MQFFGGSEISPSPPVPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60
           MQFFGGSEISPSPPVPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL
Sbjct: 1   MQFFGGSEISPSPPVPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60

Query: 61  LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120
           LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP
Sbjct: 61  LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120

Query: 121 RTGDLRDPLKYIYNLYVEYVVKNPIYSPGTPIRCELFNTSLDQYVRTIL 170
           RTGDLRDPLKYIYNLYVEYVVKNPIYSPGTPIRCELFNTSLDQYVRTIL
Sbjct: 121 RTGDLRDPLKYIYNLYVEYVVKNPIYSPGTPIRCELFNTSLDQYVRTIL 169

[Close]
BLAST of Cucsa.201730 vs. NCBI nr
Match: gi|659074318|ref|XP_008437540.1| (PREDICTED: trafficking protein particle complex subunit 1 [Cucumis melo])

HSP 1 Score: 352.4 bits (903), Expect = 4.3e-94
Identity = 166/169 (98.22%), Postives = 168/169 (99.41%), Query Frame = 1 

Query: 1   MQFFGGSEISPSPPVPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60
           MQFFGGSEISPSPPVPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL
Sbjct: 1   MQFFGGSEISPSPPVPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60

Query: 61  LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120
           LFSLKSFTAKMDPTS DKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP
Sbjct: 61  LFSLKSFTAKMDPTSVDKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120

Query: 121 RTGDLRDPLKYIYNLYVEYVVKNPIYSPGTPIRCELFNTSLDQYVRTIL 170
           RTGDLRDPLKYIYNLYVEYVVKNP+YSPGTPIRCELFNTSLDQYVR+IL
Sbjct: 121 RTGDLRDPLKYIYNLYVEYVVKNPLYSPGTPIRCELFNTSLDQYVRSIL 169

[Close]
BLAST of Cucsa.201730 vs. NCBI nr
Match: gi|590673301|ref|XP_007038853.1| (SNARE-like superfamily protein isoform 1 [Theobroma cacao])

HSP 1 Score: 331.6 bits (849), Expect = 7.8e-88
Identity = 154/168 (91.67%), Postives = 160/168 (95.24%), Query Frame = 1 

Query: 1   MQFFGGSEISPSPPVPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60
           MQFFGGSEISPSPPVPT TGNN HMMY+FNRNGVCL YREWNRPL TLNPQQDHKLMFGL
Sbjct: 1   MQFFGGSEISPSPPVPTTTGNNAHMMYVFNRNGVCLLYREWNRPLHTLNPQQDHKLMFGL 60

Query: 61  LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120
           LFSLKS TAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSF ETPSGIKIILVTHP
Sbjct: 61  LFSLKSLTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFMETPSGIKIILVTHP 120

Query: 121 RTGDLRDPLKYIYNLYVEYVVKNPIYSPGTPIRCELFNTSLDQYVRTI 169
           RTGDLR+PLKYIYNLYVEYV KNP+Y+PGT IRCELFNT+LDQYVR+I
Sbjct: 121 RTGDLREPLKYIYNLYVEYVAKNPLYTPGTSIRCELFNTALDQYVRSI 168

[Close]
BLAST of Cucsa.201730 vs. NCBI nr
Match: gi|566210554|ref|XP_006372361.1| (synbindin family protein [Populus trichocarpa])

HSP 1 Score: 323.9 bits (829), Expect = 1.6e-85
Identity = 150/168 (89.29%), Postives = 158/168 (94.05%), Query Frame = 1 

Query: 1   MQFFGGSEISPSPPVPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60
           MQFFGGS+ISPSPP PTA+GNN HMMY+FNRNGVCL YREWNRPL TLN QQDHKLMFGL
Sbjct: 1   MQFFGGSDISPSPPAPTASGNNAHMMYVFNRNGVCLLYREWNRPLHTLNAQQDHKLMFGL 60

Query: 61  LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120
           LFSLKS TAKMDPTS DKGNLGVPQLPGQGCSFHSFRTNTYKLSF ETPSGIKIIL+THP
Sbjct: 61  LFSLKSLTAKMDPTSMDKGNLGVPQLPGQGCSFHSFRTNTYKLSFMETPSGIKIILITHP 120

Query: 121 RTGDLRDPLKYIYNLYVEYVVKNPIYSPGTPIRCELFNTSLDQYVRTI 169
           +TGDLR+ LKYIYNLYVEYVVKNPIY+PG PIRCELFNTSLDQYVR+I
Sbjct: 121 KTGDLRESLKYIYNLYVEYVVKNPIYTPGAPIRCELFNTSLDQYVRSI 168

[Close]
BLAST of Cucsa.201730 vs. NCBI nr
Match: gi|1012108459|ref|XP_015959336.1| (PREDICTED: trafficking protein particle complex subunit 1-like [Arachis duranensis])

HSP 1 Score: 323.2 bits (827), Expect = 2.8e-85
Identity = 151/168 (89.88%), Postives = 160/168 (95.24%), Query Frame = 1 

Query: 1   MQFFGGSEISPSPPVPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60
           MQFFGGSEISPSPPVPTA+GNN HMMY+FNRNGVCL YREWNRPLRTLN QQDHKLMFGL
Sbjct: 1   MQFFGGSEISPSPPVPTASGNNGHMMYVFNRNGVCLLYREWNRPLRTLNAQQDHKLMFGL 60

Query: 61  LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120
           LFSLKS TAKMDPT A+KGNLGVPQLPGQGCSFHSFRTNTYKLSF E+PSGIKIILVTHP
Sbjct: 61  LFSLKSLTAKMDPTIAEKGNLGVPQLPGQGCSFHSFRTNTYKLSFMESPSGIKIILVTHP 120

Query: 121 RTGDLRDPLKYIYNLYVEYVVKNPIYSPGTPIRCELFNTSLDQYVRTI 169
           RTGDLRD LKYIYNLYVEYVVKNP+Y+PG+PIRC+LFNT+LDQYVR I
Sbjct: 121 RTGDLRDSLKYIYNLYVEYVVKNPLYTPGSPIRCQLFNTTLDQYVRGI 168

The following BLAST results are available for this feature:
BLAST of Cucsa.201730 vs. Swiss-Prot
Match NameE-valueIdentityDescription
TPPC1_MOUSE8.2e-2944.59Trafficking protein particle complex subunit 1 OS=Mus musculus GN=Trappc1 PE=1 S... [more]
TPPC1_RAT8.2e-2944.59Trafficking protein particle complex subunit 1 OS=Rattus norvegicus GN=Trappc1 P... [more]
TPPC1_DICDI8.2e-2940.69Trafficking protein particle complex subunit 1 OS=Dictyostelium discoideum GN=tr... [more]
TPPC1_BOVIN5.3e-2843.92Trafficking protein particle complex subunit 1 OS=Bos taurus GN=TRAPPC1 PE=2 SV=... [more]
TPPC1_HUMAN5.3e-2843.92Trafficking protein particle complex subunit 1 OS=Homo sapiens GN=TRAPPC1 PE=1 S... [more]
BLAST of Cucsa.201730 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KM26_CUCSA2.1e-95100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G139910 PE=4 SV=1[more]
A0A061G8H7_THECC5.5e-8891.67SNARE-like superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_015275 PE=4 S... [more]
B9MX74_POPTR1.1e-8589.29Synbindin family protein OS=Populus trichocarpa GN=POPTR_0017s00860g PE=4 SV=1[more]
A0A0D3CPY0_BRAOL2.5e-8589.29Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1[more]
M4DQV4_BRARP2.5e-8589.29Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1[more]
BLAST of Cucsa.201730 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G51160.13.7e-8888.69 SNARE-like superfamily protein[more]
AT5G02280.16.7e-1329.45 SNARE-like superfamily protein[more]
BLAST of Cucsa.201730 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449456339|ref|XP_004145907.1|3.0e-95100.00PREDICTED: trafficking protein particle complex subunit 1 [Cucumis sativus][more]
gi|659074318|ref|XP_008437540.1|4.3e-9498.22PREDICTED: trafficking protein particle complex subunit 1 [Cucumis melo][more]
gi|590673301|ref|XP_007038853.1|7.8e-8891.67SNARE-like superfamily protein isoform 1 [Theobroma cacao][more]
gi|566210554|ref|XP_006372361.1|1.6e-8589.29synbindin family protein [Populus trichocarpa][more]
gi|1012108459|ref|XP_015959336.1|2.8e-8589.88PREDICTED: trafficking protein particle complex subunit 1-like [Arachis duranens... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007233TRAPPC
IPR011012Longin-like_dom_sf
IPR007233TRAPPC
IPR011012Longin-like_dom_sf
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
GO:0006810transport
Vocabulary: Cellular Component
TermDefinition
GO:0030008TRAPP complex
GO:0030008TRAPP complex
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006888 ER to Golgi vesicle-mediated transport
biological_process GO:0010413 glucuronoxylan metabolic process
biological_process GO:0009832 plant-type cell wall biogenesis
biological_process GO:0045492 xylan biosynthetic process
biological_process GO:0006810 transport
biological_process GO:0016192 vesicle-mediated transport
cellular_component GO:0005801 cis-Golgi network
cellular_component GO:0005829 cytosol
cellular_component GO:0030008 TRAPP complex
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.201730.1Cucsa.201730.1mRNA
Cucsa.201730.2Cucsa.201730.2mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007233Trafficking protein particle complex subunitPANTHERPTHR23249SYNBINDINcoord: 1..168
score: 3.5
IPR007233Trafficking protein particle complex subunitPFAMPF04099Sybindincoord: 23..167
score: 1.3
IPR007233Trafficking protein particle complex subunitSMARTSM01399Sybindin_2coord: 23..168
score: 1.6
IPR011012Longin-like domainunknownSSF64356SNARE-likecoord: 23..168
score: 1.37
NoneNo IPR availableGENE3DG3DSA:3.30.450.70coord: 23..168
score: 1.6
NoneNo IPR availablePANTHERPTHR23249:SF16TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 1coord: 1..168
score: 3.5

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.201730Cla004935Watermelon (97103) v1cgywmB400
Cucsa.201730Csa5G139910Cucumber (Chinese Long) v2cgycuB309
Cucsa.201730MELO3C005845Melon (DHL92) v3.5.1cgymeB367
Cucsa.201730ClCG01G000850Watermelon (Charleston Gray)cgywcgB375
Cucsa.201730CSPI05G03630Wild cucumber (PI 183967)cgycpiB322
Cucsa.201730CmaCh15G010630Cucurbita maxima (Rimu)cgycmaB0599
Cucsa.201730CmaCh02G010860Cucurbita maxima (Rimu)cgycmaB0602
Cucsa.201730CmoCh15G011200Cucurbita moschata (Rifu)cgycmoB0600
Cucsa.201730CmoCh02G011040Cucurbita moschata (Rifu)cgycmoB0603
Cucsa.201730Lsi09G000730Bottle gourd (USVL1VR-Ls)cgylsiB347
Cucsa.201730Cp4.1LG13g02750Cucurbita pepo (Zucchini)cgycpeB0571
Cucsa.201730Cp4.1LG05g06360Cucurbita pepo (Zucchini)cgycpeB0576
Cucsa.201730MELO3C005845.2Melon (DHL92) v3.6.1cgymedB363
Cucsa.201730CsaV3_5G000990Cucumber (Chinese Long) v3cgycucB327
Cucsa.201730Cla97C01G000930Watermelon (97103) v2cgywmbB379
Cucsa.201730Bhi12G000675Wax gourdcgywgoB425
Cucsa.201730Carg27017Silver-seed gourdcarcgyB0650
Cucsa.201730Carg08394Silver-seed gourdcarcgyB0800
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.201730Melon (DHL92) v3.6.1cgymedB366
Cucsa.201730Cucumber (Chinese Long) v3cgycucB325
Cucsa.201730Watermelon (97103) v2cgywmbB381
Cucsa.201730Cucumber (Gy14) v1cgycgyB116
Cucsa.201730Cucurbita moschata (Rifu)cgycmoB0597
Cucsa.201730Wild cucumber (PI 183967)cgycpiB320
Cucsa.201730Cucumber (Chinese Long) v2cgycuB307
Cucsa.201730Watermelon (Charleston Gray)cgywcgB377
Cucsa.201730Watermelon (97103) v1cgywmB398
Cucsa.201730Bottle gourd (USVL1VR-Ls)cgylsiB349