CmoCh15G011200 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh15G011200
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Trafficking particle complex subunit 1
Location	Cmo_Chr15 : 7787850 .. 7791642 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTCCGACTCACAGGTGTCTTTTTCTTGGCCCGAATTTCTGTGTTTCCGAATCCGCGCTCTTTTCGAGCGCAGCGACTGATTTTGAGCGATCGATTTGCTTACGCCTTTCCAGAATCGACGTTCATTTAATCTGTAATAGTCGGAGGCGTCTTCGGCGCTGCGAGGCTCCGATCTACTGCCGTTGTCGCCGGTAATCATTGCTTGACGAATTAAGGTCTTGGTCGTTGGATCGATCGCTCCCTTTTATCGCCGTCTTTCCTCTCTGAGGTATCTTTCTCGTCTCCATTTTTTTTTTATGGTTTTGATTCTTCTTCTTGAATCGGTCACTGTTCAGCTCATTACAGATTTTCTCTCCATTTTCCTTCCTCTCAGTCTCTTCTACGATCCATCAGCAAAATTTACTCCCAATTTTACACTAGATTTGTTTCTAACTATAAAGAGTGGTTCTGTGGAGAGGCCAAAGAGAAATGAATCTGTGTTTTTTTGGTTGAGTCATATAGATTCCTGCTGAACTGAATCCTGATTTGGATCGACTTAGATATCACACATTGACGATTCGCTATTTTCTTTTTAACCTATACGATTTACATTTTGTCCAAATTATTTCCTCTTACCCTTAACTAGACTAGATCATTCCATGTATTTATGGTTTCTCTGATCAGCTCCCTCGTGTTCCTACCGGATAATATGAGTTAGACAAGTAAAGCTGTGGGGAATCTCTGAATTCTTAGTTGTTTTGCTAGACAACTGATTGTAGAGTTAGTGGAAATGTTGGGGTTTTGTCAGAAATCTTAGATTCGTATACCATTTATGTATGATAATTGATTTGATTCAGTTTAGTTTACTCCAGAAACCATGCAGTTCTTTGGTGGCTCAGAGATTAGCCCTTCGCCTACTGTCCCGACAGCAACTGGAAACAATGTGAATATGATGTATATTTTCAATAGGAATGGAGTTTGCTTGTTCTACAGGGAGTGGAATCGGCCTCTCCGGACATTGAATCCCCAGCAAGACCACAAACTTATGTTTGGTTTGCTCTTCTCGCTCAAATCATTTACTGCTAAGATGGACCCAACCAGGTTTATGTTTCTTCCTTAACTGGGAAACTACATTGGCTTGTGGCATGCCTGGTTAAAGTAATTGATCCAGCAAGATAGGAGATAATGCGAACTATATTTTTATGTCTTAATAACTTGACAAATGCATTGCTATTTATGGTCGGTGGCATAACCAATAATGTCTAATTTGATTGTAGATTTTGGTTTTGAATTTTCAAAGTCTTATCTTATTGGGAAGTGATGAGCTGCTTTTGGGAGTTTATTTTGAATTTTTCCTTTTTTTGGTACAGTGCTGATAAAGGCAATCTTGGTGTGCCTCAGTTACCTGGCCAAGGTTGTTCGTTTCACAGTTTTCGTACGAATACCTACAAGCTCAGTTTTACTGAAACTCCATCAGGGATAAAGGTTTCTATCTCCTTCCCTCTTTTGTTCTTTTCTATATTTGACATTTTAGTTTCATGCATGTCTACTTGAATCGCTAAGTTAAGTTTCTTGATATATGGCATGAGCAGAGCAGACTGCATATGGATTATTGAGGTTTAATGAAACCAATATTTGGGTCATTGATTTGCCTATTTATTGCTATTATCATTGTTATTTGACAAGGTAGATGGGGGTTTTAAAGGTTTGGGCTCTTTCTTCTTTGAACTTGTTGTGTCACATGGATTAATTAAGTTCTGATTCATAGCCTCATGAAATGTTTTTGTTTTCTTTCTTGTTCTTATGAAGTTCAGTTTTCTTGGTGATGATTAGTACTTCCAATGAATCTCTTTTTTTGCTTCTTGTTTTATATCTTGAAGAGTTAAGGATGGACTTTTGGAAGAAGCCCTTTGAAGCTGCTGTTTTAAAATTGTTTCTGTTTTGAAAAATAATTAACTGGAGGTGCAAAAGGGGGATTCTTGGCATTCACTGTAGGGTCACTATGCTTGAGATTGATAGATTAGCTTGAAGTTCGGTTTTGTGTGCATTGATGGATTATTTCCTTGTTTCAGATTATCCTGGTTACCCATCCTAGAACCGGTGATCTGAGGGACTCGTTGAAGTACATTTACAACTTGTATGTTGAATACGTTGTGAAAAATCCTCTCTACAGTCCAGGAACCCCAATCAGGTAAAGTGAAAGCTTTGGTCGATGCATATGTCCTATATACCAACTGTAGTAATTTAATCAAAGAAACACAGTTCAAAGCCTAATAGAATAAAATCAACATCTTTGATGAATTTGAATTTGTAATGCATGCATCCAGTGGTTTCAGTTTAATTAAGATCAAATGATGTCTGGCATAAGGGAATTTATTATTGGTTCTTAACCTTAACTATAACTACTTTAAGTCTATCTGAGAGGCCTTTTCAGGGATCTTTTAGGCTTTACTAGGTTCTCCCTTTAGACTAAATTACAACTTTAGTTCCTGGGGTTCAGCTTGGTTTTTATTTGGTTGCTGTGATCTAAAAGTTTCACTGTAGTCCCTATGATTTGGTTAAATCTCTCAAAAAGTCTGTGTGATTACCATATGTTAGTAGTTTTCTGACTTCCCATGCTTCTTCATTTTTCATTTTTTTGAAATTTAATATTTTTTTCCTTTTTCTTTTTAACGTGGATAAGGGAGACAATAAGTTTACTTTAAGCATAAGGCATGGTTAAATATTCCATTGGCTAACCATATTAAAGTTTGAATTGGGTGAACAAATATAAGAAATTGGGTGAGTGTTCAGCTAAAGACAACAATATTGTGTATCAAAGGGGTCGATTTTGGACTTGGGTTTCTTTAAAAGTGGGTGATTTATGTCGAAAGTTCGGCTGCAAAACTTGCCTTCCTCTATTTCTGAACTCACTCAACTCAAACCATAATTCAATCAACAATTTAACCTTTAGATATTCCTTACATTGAATGGTAGCACATAGCCCTTGTTTTTCACTTCCGATGAAAAATAGTTTTGTTAGAAAATTATTAACACCCAATTAGGGTAGATACATTTAAAGGAGGTTGAACTGAGCTATGGGGACTAAAATGTTAATTCAACCCTTCTTTTACCAAAAAGTTGTACATTGGAGAATATTCATGAAGTTTTCCTGTTTACTCTTTTTAGCAAAAGATTTGAAATGTTTCTATATCTTATTTACGGACTTAACCCACCCTCTCAATCAGTCCATACTTGCTATGATATAGTTTTTATGATGAAAATAAAGTTATTATTGTTTGTCCAGTCAACGCAGTATCGACTCTCCCTCGAGGCCTTGATTAATCATTTGATTTTGCTTTATGCAGGTGTGAGCTATTCAGTACAAGTCTTGACCAATATGTAAGGACTATATTATAGAAATCAAAGGTAGTGACTGCTTTGCCGTTTTAGTTTCGTTTACGTCGTATGCTTTGTCTCTTGTTGATGATTGAATACATTTCACTGAACAATGGTGCAGTTCCAGGCGATTAAAATGCCTACCTGGGATTTTCTCTTTGTATTCCATCGCTTGGAATGAGAGTGTACCGGTATAAATTTTTCTAGTGTACTTTTTTCCGTTATTCTATTTCCCTGCATTTTGTGGTAACTTCTCTGTGATAGTGGTGGAAGCAAAAAAAGACTAGTACAAATGTTTGCTGCCCATGTATGATTTGTAGTAGTGCATTTATATTTCTTTTTTCGTATACATTCGTACCATACATTAGGTACAAAAAATGTGAAAGGTCTTAAACAGGAAAGTATTATGATCAATTACCTTCTTAACCTCTCCCACC

mRNA sequence

GTCCGACTCACAGGTGTCTTTTTCTTGGCCCGAATTTCTGTGTTTCCGAATCCGCGCTCTTTTCGAGCGCAGCGACTGATTTTGAGCGATCGATTTGCTTACGCCTTTCCAGAATCGACGTTCATTTAATCTGTAATAGTCGGAGGCGTCTTCGGCGCTGCGAGGCTCCGATCTACTGCCGTTGTCGCCGGTAATCATTGCTTGACGAATTAAGGTCTTGGTCGTTGGATCGATCGCTCCCTTTTATCGCCGTCTTTCCTCTCTGAGAAACCATGCAGTTCTTTGGTGGCTCAGAGATTAGCCCTTCGCCTACTGTCCCGACAGCAACTGGAAACAATGTGAATATGATGTATATTTTCAATAGGAATGGAGTTTGCTTGTTCTACAGGGAGTGGAATCGGCCTCTCCGGACATTGAATCCCCAGCAAGACCACAAACTTATGTTTGGTTTGCTCTTCTCGCTCAAATCATTTACTGCTAAGATGGACCCAACCAGTGCTGATAAAGGCAATCTTGGTGTGCCTCAGTTACCTGGCCAAGGTTGTTCGTTTCACAGTTTTCGTACGAATACCTACAAGCTCAGTTTTACTGAAACTCCATCAGGGATAAAGATTATCCTGGTTACCCATCCTAGAACCGGTGATCTGAGGGACTCGTTGAAGTACATTTACAACTTGTATGTTGAATACGTTGTGAAAAATCCTCTCTACAGTCCAGGAACCCCAATCAGGTGTGAGCTATTCAGTACAAGTCTTGACCAATATGTAAGGACTATATTATAGAAATCAAAGTTCCAGGCGATTAAAATGCCTACCTGGGATTTTCTCTTTGTATTCCATCGCTTGGAATGAGAGTGTACCGGTATAAATTTTTCTAGTGTACTTTTTTCCGTTATTCTATTTCCCTGCATTTTGTGGTAACTTCTCTGTGATAGTGGTGGAAGCAAAAAAAGACTAGTACAAATGTTTGCTGCCCATGTATGATTTGTAGTAGTGCATTTATATTTCTTTTTTCGTATACATTCGTACCATACATTAGGTACAAAAAATGTGAAAGGTCTTAAACAGGAAAGTATTATGATCAATTACCTTCTTAACCTCTCCCACC

Coding sequence (CDS)

ATGCAGTTCTTTGGTGGCTCAGAGATTAGCCCTTCGCCTACTGTCCCGACAGCAACTGGAAACAATGTGAATATGATGTATATTTTCAATAGGAATGGAGTTTGCTTGTTCTACAGGGAGTGGAATCGGCCTCTCCGGACATTGAATCCCCAGCAAGACCACAAACTTATGTTTGGTTTGCTCTTCTCGCTCAAATCATTTACTGCTAAGATGGACCCAACCAGTGCTGATAAAGGCAATCTTGGTGTGCCTCAGTTACCTGGCCAAGGTTGTTCGTTTCACAGTTTTCGTACGAATACCTACAAGCTCAGTTTTACTGAAACTCCATCAGGGATAAAGATTATCCTGGTTACCCATCCTAGAACCGGTGATCTGAGGGACTCGTTGAAGTACATTTACAACTTGTATGTTGAATACGTTGTGAAAAATCCTCTCTACAGTCCAGGAACCCCAATCAGGTGTGAGCTATTCAGTACAAGTCTTGACCAATATGTAAGGACTATATTATAG

Homology

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BLAST of CmoCh15G011200 vs. Swiss-Prot
Match: TPPC1_DICDI (Trafficking protein particle complex subunit 1 OS=Dictyostelium discoideum GN=trappc1-1 PE=3 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 7.4e-30
Identity = 58/142 (40.85%), Postives = 90/142 (63.38%), Query Frame = 1


Query: 26  MYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGLLFSLKSFTAKMDPTSADKGNLGVPQ 85
           +YIFN++G C++Y +WN+  ++ N  +D KL+FG+L+SLK+F     P   D        
Sbjct: 5   IYIFNKDGTCIYYEDWNKKKQSQNQSEDQKLLFGMLYSLKAFITSSSPKKID-------- 64

Query: 86  LPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHPRTGDLRDSLKYIYN-LYVEYVVKNP 145
                  FH ++T+TYKL + ET S IK I+++ P   DLRD LK IY+ ++VEYV+KNP
Sbjct: 65  ---DKTGFHCYKTSTYKLHYYETLSCIKFIIMSDPNVPDLRDDLKKIYSQIFVEYVIKNP 124

Query: 146 LYSPGTPIRCELFSTSLDQYVR 167
           +Y  GT ++C+ F   L+ Y++
Sbjct: 125 IYKHGTTVKCDTFINQLNLYLK 135

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BLAST of CmoCh15G011200 vs. Swiss-Prot
Match: TPPC1_MOUSE (Trafficking protein particle complex subunit 1 OS=Mus musculus GN=Trappc1 PE=1 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 1.7e-29
Identity = 66/148 (44.59%), Postives = 97/148 (65.54%), Query Frame = 1


Query: 23  VNMMYIFNRNGVCLFYREWNRPLRTLNP-QQDHKLMFGLLFSLKSFTAKMDPTSADKGNL 82
           V+ +Y+F+RNGVCL Y EW+R  +   P ++++KLM+G+LFS++SF +KM P     G  
Sbjct: 3   VHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDG-- 62

Query: 83  GVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHPRTGDLRDSLKYIYN-LYVEYV 142
                      F SF+T+ YKL + ETP+GIK+++ T    G +RD L +IY+ LYVE+V
Sbjct: 63  -----------FLSFQTSRYKLHYYETPTGIKVVMNTDLGVGPIRDVLHHIYSALYVEFV 122

Query: 143 VKNPLYSPGTPIRCELFSTSLDQYVRTI 169
           VKNPL   G  ++ ELF + LD YVR++
Sbjct: 123 VKNPLCPLGQTVQSELFRSRLDSYVRSL 137

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BLAST of CmoCh15G011200 vs. Swiss-Prot
Match: TPPC1_RAT (Trafficking protein particle complex subunit 1 OS=Rattus norvegicus GN=Trappc1 PE=2 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 1.7e-29
Identity = 66/148 (44.59%), Postives = 97/148 (65.54%), Query Frame = 1


Query: 23  VNMMYIFNRNGVCLFYREWNRPLRTLNP-QQDHKLMFGLLFSLKSFTAKMDPTSADKGNL 82
           V+ +Y+F+RNGVCL Y EW+R  +   P ++++KLM+G+LFS++SF +KM P     G  
Sbjct: 3   VHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDG-- 62

Query: 83  GVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHPRTGDLRDSLKYIYN-LYVEYV 142
                      F SF+T+ YKL + ETP+GIK+++ T    G +RD L +IY+ LYVE+V
Sbjct: 63  -----------FLSFQTSRYKLHYYETPTGIKVVMNTDLGVGPIRDVLHHIYSALYVEFV 122

Query: 143 VKNPLYSPGTPIRCELFSTSLDQYVRTI 169
           VKNPL   G  ++ ELF + LD YVR++
Sbjct: 123 VKNPLCPLGQTVQSELFRSRLDSYVRSL 137

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BLAST of CmoCh15G011200 vs. Swiss-Prot
Match: TPPC1_BOVIN (Trafficking protein particle complex subunit 1 OS=Bos taurus GN=TRAPPC1 PE=2 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 1.1e-28
Identity = 65/148 (43.92%), Postives = 96/148 (64.86%), Query Frame = 1


Query: 23  VNMMYIFNRNGVCLFYREWNRPLRTLNP-QQDHKLMFGLLFSLKSFTAKMDPTSADKGNL 82
           V+ +Y+F+RNGVCL Y EW+R  +   P ++++KLM+G+LFS++SF +KM P     G  
Sbjct: 3   VHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDG-- 62

Query: 83  GVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHPRTGDLRDSLKYIYN-LYVEYV 142
                      F +F+T+ YKL + ETP+GIK+++ T    G +RD L +IY+ LYVE V
Sbjct: 63  -----------FLAFQTSRYKLHYYETPTGIKVVMNTDLGVGPIRDVLHHIYSALYVELV 122

Query: 143 VKNPLYSPGTPIRCELFSTSLDQYVRTI 169
           VKNPL   G  ++ ELF + LD YVR++
Sbjct: 123 VKNPLCPLGQTVQSELFRSRLDSYVRSL 137

[Close]

BLAST of CmoCh15G011200 vs. Swiss-Prot
Match: TPPC1_HUMAN (Trafficking protein particle complex subunit 1 OS=Homo sapiens GN=TRAPPC1 PE=1 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 1.1e-28
Identity = 65/148 (43.92%), Postives = 96/148 (64.86%), Query Frame = 1


Query: 23  VNMMYIFNRNGVCLFYREWNRPLRTLNP-QQDHKLMFGLLFSLKSFTAKMDPTSADKGNL 82
           V+ +Y+F+RNGVCL Y EW+R  +   P ++++KLM+G+LFS++SF +KM P     G  
Sbjct: 3   VHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDG-- 62

Query: 83  GVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHPRTGDLRDSLKYIYN-LYVEYV 142
                      F +F+T+ YKL + ETP+GIK+++ T    G +RD L +IY+ LYVE V
Sbjct: 63  -----------FLAFQTSRYKLHYYETPTGIKVVMNTDLGVGPIRDVLHHIYSALYVELV 122

Query: 143 VKNPLYSPGTPIRCELFSTSLDQYVRTI 169
           VKNPL   G  ++ ELF + LD YVR++
Sbjct: 123 VKNPLCPLGQTVQSELFRSRLDSYVRSL 137

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BLAST of CmoCh15G011200 vs. TrEMBL
Match: A0A0A0KM26_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G139910 PE=4 SV=1)

HSP 1 Score: 350.1 bits (897), Expect = 1.5e-93
Identity = 164/169 (97.04%), Postives = 167/169 (98.82%), Query Frame = 1


Query: 1   MQFFGGSEISPSPTVPTATGNNVNMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60
           MQFFGGSEISPSP VPTATGNNV+MMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL
Sbjct: 1   MQFFGGSEISPSPPVPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60

Query: 61  LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120
           LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP
Sbjct: 61  LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120

Query: 121 RTGDLRDSLKYIYNLYVEYVVKNPLYSPGTPIRCELFSTSLDQYVRTIL 170
           RTGDLRD LKYIYNLYVEYVVKNP+YSPGTPIRCELF+TSLDQYVRTIL
Sbjct: 121 RTGDLRDPLKYIYNLYVEYVVKNPIYSPGTPIRCELFNTSLDQYVRTIL 169

[Close]

BLAST of CmoCh15G011200 vs. TrEMBL
Match: A0A061G8H7_THECC (SNARE-like superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_015275 PE=4 SV=1)

HSP 1 Score: 327.0 bits (837), Expect = 1.3e-86
Identity = 151/168 (89.88%), Postives = 158/168 (94.05%), Query Frame = 1


Query: 1   MQFFGGSEISPSPTVPTATGNNVNMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60
           MQFFGGSEISPSP VPT TGNN +MMY+FNRNGVCL YREWNRPL TLNPQQDHKLMFGL
Sbjct: 1   MQFFGGSEISPSPPVPTTTGNNAHMMYVFNRNGVCLLYREWNRPLHTLNPQQDHKLMFGL 60

Query: 61  LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120
           LFSLKS TAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSF ETPSGIKIILVTHP
Sbjct: 61  LFSLKSLTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFMETPSGIKIILVTHP 120

Query: 121 RTGDLRDSLKYIYNLYVEYVVKNPLYSPGTPIRCELFSTSLDQYVRTI 169
           RTGDLR+ LKYIYNLYVEYV KNPLY+PGT IRCELF+T+LDQYVR+I
Sbjct: 121 RTGDLREPLKYIYNLYVEYVAKNPLYTPGTSIRCELFNTALDQYVRSI 168

[Close]

BLAST of CmoCh15G011200 vs. TrEMBL
Match: B9MX74_POPTR (Synbindin family protein OS=Populus trichocarpa GN=POPTR_0017s00860g PE=4 SV=1)

HSP 1 Score: 322.8 bits (826), Expect = 2.5e-85
Identity = 147/168 (87.50%), Postives = 158/168 (94.05%), Query Frame = 1


Query: 1   MQFFGGSEISPSPTVPTATGNNVNMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60
           MQFFGGS+ISPSP  PTA+GNN +MMY+FNRNGVCL YREWNRPL TLN QQDHKLMFGL
Sbjct: 1   MQFFGGSDISPSPPAPTASGNNAHMMYVFNRNGVCLLYREWNRPLHTLNAQQDHKLMFGL 60

Query: 61  LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120
           LFSLKS TAKMDPTS DKGNLGVPQLPGQGCSFHSFRTNTYKLSF ETPSGIKIIL+THP
Sbjct: 61  LFSLKSLTAKMDPTSMDKGNLGVPQLPGQGCSFHSFRTNTYKLSFMETPSGIKIILITHP 120

Query: 121 RTGDLRDSLKYIYNLYVEYVVKNPLYSPGTPIRCELFSTSLDQYVRTI 169
           +TGDLR+SLKYIYNLYVEYVVKNP+Y+PG PIRCELF+TSLDQYVR+I
Sbjct: 121 KTGDLRESLKYIYNLYVEYVVKNPIYTPGAPIRCELFNTSLDQYVRSI 168

[Close]

BLAST of CmoCh15G011200 vs. TrEMBL
Match: A0A067JEE3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26037 PE=4 SV=1)

HSP 1 Score: 322.4 bits (825), Expect = 3.3e-85
Identity = 148/168 (88.10%), Postives = 159/168 (94.64%), Query Frame = 1


Query: 1   MQFFGGSEISPSPTVPTATGNNVNMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60
           MQFFGGS+ISPSP  PTA+GNN +MMY+FNRNGVCL YREWNRPL TLN QQDHKLMFGL
Sbjct: 1   MQFFGGSDISPSPPAPTASGNNAHMMYVFNRNGVCLLYREWNRPLHTLNAQQDHKLMFGL 60

Query: 61  LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120
           LFSLKS TAKMDPTSA+KGNLG+PQLPGQGCSFHSFRTNTYKLSF E+ SGIKIIL+THP
Sbjct: 61  LFSLKSLTAKMDPTSAEKGNLGMPQLPGQGCSFHSFRTNTYKLSFMESASGIKIILITHP 120

Query: 121 RTGDLRDSLKYIYNLYVEYVVKNPLYSPGTPIRCELFSTSLDQYVRTI 169
           RTGDLR+SLKYIYNLYVEYVVKNPLYSPGTPIRCELF+TSLDQYVR+I
Sbjct: 121 RTGDLRESLKYIYNLYVEYVVKNPLYSPGTPIRCELFNTSLDQYVRSI 168

[Close]

BLAST of CmoCh15G011200 vs. TrEMBL
Match: A0A0V0HKV9_SOLCH (Putative trafficking protein particle complex subunit 1-like OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 322.4 bits (825), Expect = 3.3e-85
Identity = 147/166 (88.55%), Postives = 158/166 (95.18%), Query Frame = 1


Query: 1   MQFFGGSEISPSPTVPTATGNNVNMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60
           MQFFGGSEISPSP  PT +GNN +MMY+FNRNGVCL YREWNRPL+TLNPQQDHKLMFGL
Sbjct: 1   MQFFGGSEISPSPPPPTVSGNNAHMMYVFNRNGVCLLYREWNRPLKTLNPQQDHKLMFGL 60

Query: 61  LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120
           LFSLKS TAKMDPTSA+KGNLGVPQLPGQGCSFHSFRTNTYKLSF E+PSGIKIILVTHP
Sbjct: 61  LFSLKSLTAKMDPTSAEKGNLGVPQLPGQGCSFHSFRTNTYKLSFMESPSGIKIILVTHP 120

Query: 121 RTGDLRDSLKYIYNLYVEYVVKNPLYSPGTPIRCELFSTSLDQYVR 167
           RTGDLR+SLKYIYNLYVEYVVKNPLYSPG PI+CELF+++LDQYVR
Sbjct: 121 RTGDLRESLKYIYNLYVEYVVKNPLYSPGAPIKCELFNSTLDQYVR 166

[Close]

BLAST of CmoCh15G011200 vs. TAIR10
Match: AT1G51160.1 (AT1G51160.1 SNARE-like superfamily protein)

HSP 1 Score: 320.1 bits (819), Expect = 8.3e-88
Identity = 146/168 (86.90%), Postives = 160/168 (95.24%), Query Frame = 1


Query: 1   MQFFGGSEISPSPTVPTATGNNVNMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60
           MQFFGGSEISPSP VPTA+GNN +MMY+FNRNGVCL Y+EWNRPL TLNPQQDHKLMFGL
Sbjct: 1   MQFFGGSEISPSPPVPTASGNNAHMMYVFNRNGVCLLYKEWNRPLHTLNPQQDHKLMFGL 60

Query: 61  LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120
           LFSLKS TAKMDP +ADKGNLGVPQLPGQGCSFHSFRTNTYKLSF ETPSGIKIILVTHP
Sbjct: 61  LFSLKSLTAKMDPVNADKGNLGVPQLPGQGCSFHSFRTNTYKLSFMETPSGIKIILVTHP 120

Query: 121 RTGDLRDSLKYIYNLYVEYVVKNPLYSPGTPIRCELFSTSLDQYVRTI 169
           +TGDLR+SLKYIY+LYVEYVVKNP+YSPG+PI+ ELF+T+LDQYVR+I
Sbjct: 121 KTGDLRESLKYIYSLYVEYVVKNPIYSPGSPIKSELFNTALDQYVRSI 168

[Close]

BLAST of CmoCh15G011200 vs. TAIR10
Match: AT5G02280.1 (AT5G02280.1 SNARE-like superfamily protein)

HSP 1 Score: 73.9 bits (180), Expect = 1.0e-13
Identity = 43/143 (30.07%), Postives = 68/143 (47.55%), Query Frame = 1


Query: 26  MYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGLLFSLKSFTAKMDPTSADKGNLGVPQ 85
           +YI N++G  +FY++     R      D   +  L  S+ + + ++ P +          
Sbjct: 7   LYIINKSGGLIFYKDCGTKGRM--DTNDSLRVASLWHSMHAISQQLSPVN---------- 66

Query: 86  LPGQGCS-FHSFRTNTYKLSFTETPSGIKIILVTHPRTGDLRDSLKYIYNLYVEYVVKNP 145
               GCS       +T+ L   ++  G K  +V  P T  +   L+YIY LY +YV+KNP
Sbjct: 67  ----GCSGIELLEADTFDLHCFQSLPGTKFFVVCEPGTPHMESLLRYIYELYTDYVLKNP 126

Query: 146 LYSPGTPIRCELFSTSLDQYVRT 168
            Y    PIRCELF  +L Q V++
Sbjct: 127 FYEIEMPIRCELFDINLTQAVQS 133

[Close]

BLAST of CmoCh15G011200 vs. NCBI nr
Match: gi|449456339|ref|XP_004145907.1| (PREDICTED: trafficking protein particle complex subunit 1 [Cucumis sativus])

HSP 1 Score: 350.1 bits (897), Expect = 2.1e-93
Identity = 164/169 (97.04%), Postives = 167/169 (98.82%), Query Frame = 1


Query: 1   MQFFGGSEISPSPTVPTATGNNVNMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60
           MQFFGGSEISPSP VPTATGNNV+MMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL
Sbjct: 1   MQFFGGSEISPSPPVPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60

Query: 61  LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120
           LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP
Sbjct: 61  LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120

Query: 121 RTGDLRDSLKYIYNLYVEYVVKNPLYSPGTPIRCELFSTSLDQYVRTIL 170
           RTGDLRD LKYIYNLYVEYVVKNP+YSPGTPIRCELF+TSLDQYVRTIL
Sbjct: 121 RTGDLRDPLKYIYNLYVEYVVKNPIYSPGTPIRCELFNTSLDQYVRTIL 169

[Close]

BLAST of CmoCh15G011200 vs. NCBI nr
Match: gi|659074318|ref|XP_008437540.1| (PREDICTED: trafficking protein particle complex subunit 1 [Cucumis melo])

HSP 1 Score: 347.8 bits (891), Expect = 1.1e-92
Identity = 163/169 (96.45%), Postives = 166/169 (98.22%), Query Frame = 1


Query: 1   MQFFGGSEISPSPTVPTATGNNVNMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60
           MQFFGGSEISPSP VPTATGNNV+MMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL
Sbjct: 1   MQFFGGSEISPSPPVPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60

Query: 61  LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120
           LFSLKSFTAKMDPTS DKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP
Sbjct: 61  LFSLKSFTAKMDPTSVDKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120

Query: 121 RTGDLRDSLKYIYNLYVEYVVKNPLYSPGTPIRCELFSTSLDQYVRTIL 170
           RTGDLRD LKYIYNLYVEYVVKNPLYSPGTPIRCELF+TSLDQYVR+IL
Sbjct: 121 RTGDLRDPLKYIYNLYVEYVVKNPLYSPGTPIRCELFNTSLDQYVRSIL 169

[Close]

BLAST of CmoCh15G011200 vs. NCBI nr
Match: gi|590673301|ref|XP_007038853.1| (SNARE-like superfamily protein isoform 1 [Theobroma cacao])

HSP 1 Score: 327.0 bits (837), Expect = 1.9e-86
Identity = 151/168 (89.88%), Postives = 158/168 (94.05%), Query Frame = 1


Query: 1   MQFFGGSEISPSPTVPTATGNNVNMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60
           MQFFGGSEISPSP VPT TGNN +MMY+FNRNGVCL YREWNRPL TLNPQQDHKLMFGL
Sbjct: 1   MQFFGGSEISPSPPVPTTTGNNAHMMYVFNRNGVCLLYREWNRPLHTLNPQQDHKLMFGL 60

Query: 61  LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120
           LFSLKS TAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSF ETPSGIKIILVTHP
Sbjct: 61  LFSLKSLTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFMETPSGIKIILVTHP 120

Query: 121 RTGDLRDSLKYIYNLYVEYVVKNPLYSPGTPIRCELFSTSLDQYVRTI 169
           RTGDLR+ LKYIYNLYVEYV KNPLY+PGT IRCELF+T+LDQYVR+I
Sbjct: 121 RTGDLREPLKYIYNLYVEYVAKNPLYTPGTSIRCELFNTALDQYVRSI 168

[Close]

BLAST of CmoCh15G011200 vs. NCBI nr
Match: gi|1012108459|ref|XP_015959336.1| (PREDICTED: trafficking protein particle complex subunit 1-like [Arachis duranensis])

HSP 1 Score: 323.6 bits (828), Expect = 2.1e-85
Identity = 150/168 (89.29%), Postives = 160/168 (95.24%), Query Frame = 1


Query: 1   MQFFGGSEISPSPTVPTATGNNVNMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60
           MQFFGGSEISPSP VPTA+GNN +MMY+FNRNGVCL YREWNRPLRTLN QQDHKLMFGL
Sbjct: 1   MQFFGGSEISPSPPVPTASGNNGHMMYVFNRNGVCLLYREWNRPLRTLNAQQDHKLMFGL 60

Query: 61  LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120
           LFSLKS TAKMDPT A+KGNLGVPQLPGQGCSFHSFRTNTYKLSF E+PSGIKIILVTHP
Sbjct: 61  LFSLKSLTAKMDPTIAEKGNLGVPQLPGQGCSFHSFRTNTYKLSFMESPSGIKIILVTHP 120

Query: 121 RTGDLRDSLKYIYNLYVEYVVKNPLYSPGTPIRCELFSTSLDQYVRTI 169
           RTGDLRDSLKYIYNLYVEYVVKNPLY+PG+PIRC+LF+T+LDQYVR I
Sbjct: 121 RTGDLRDSLKYIYNLYVEYVVKNPLYTPGSPIRCQLFNTTLDQYVRGI 168

[Close]

BLAST of CmoCh15G011200 vs. NCBI nr
Match: gi|566210554|ref|XP_006372361.1| (synbindin family protein [Populus trichocarpa])

HSP 1 Score: 322.8 bits (826), Expect = 3.6e-85
Identity = 147/168 (87.50%), Postives = 158/168 (94.05%), Query Frame = 1


Query: 1   MQFFGGSEISPSPTVPTATGNNVNMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60
           MQFFGGS+ISPSP  PTA+GNN +MMY+FNRNGVCL YREWNRPL TLN QQDHKLMFGL
Sbjct: 1   MQFFGGSDISPSPPAPTASGNNAHMMYVFNRNGVCLLYREWNRPLHTLNAQQDHKLMFGL 60

Query: 61  LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120
           LFSLKS TAKMDPTS DKGNLGVPQLPGQGCSFHSFRTNTYKLSF ETPSGIKIIL+THP
Sbjct: 61  LFSLKSLTAKMDPTSMDKGNLGVPQLPGQGCSFHSFRTNTYKLSFMETPSGIKIILITHP 120

Query: 121 RTGDLRDSLKYIYNLYVEYVVKNPLYSPGTPIRCELFSTSLDQYVRTI 169
           +TGDLR+SLKYIYNLYVEYVVKNP+Y+PG PIRCELF+TSLDQYVR+I
Sbjct: 121 KTGDLRESLKYIYNLYVEYVVKNPIYTPGAPIRCELFNTSLDQYVRSI 168

The following BLAST results are available for this feature:

BLAST of CmoCh15G011200 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TPPC1_DICDI	7.4e-30	40.85	Trafficking protein particle complex subunit 1 OS=Dictyostelium discoideum GN=tr...	[more]
TPPC1_MOUSE	1.7e-29	44.59	Trafficking protein particle complex subunit 1 OS=Mus musculus GN=Trappc1 PE=1 S...	[more]
TPPC1_RAT	1.7e-29	44.59	Trafficking protein particle complex subunit 1 OS=Rattus norvegicus GN=Trappc1 P...	[more]
TPPC1_BOVIN	1.1e-28	43.92	Trafficking protein particle complex subunit 1 OS=Bos taurus GN=TRAPPC1 PE=2 SV=...	[more]
TPPC1_HUMAN	1.1e-28	43.92	Trafficking protein particle complex subunit 1 OS=Homo sapiens GN=TRAPPC1 PE=1 S...	[more]

BLAST of CmoCh15G011200 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KM26_CUCSA	1.5e-93	97.04	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G139910 PE=4 SV=1	[more]
A0A061G8H7_THECC	1.3e-86	89.88	SNARE-like superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_015275 PE=4 S...	[more]
B9MX74_POPTR	2.5e-85	87.50	Synbindin family protein OS=Populus trichocarpa GN=POPTR_0017s00860g PE=4 SV=1	[more]
A0A067JEE3_JATCU	3.3e-85	88.10	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26037 PE=4 SV=1	[more]
A0A0V0HKV9_SOLCH	3.3e-85	88.55	Putative trafficking protein particle complex subunit 1-like OS=Solanum chacoens...	[more]

BLAST of CmoCh15G011200 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G51160.1	8.3e-88	86.90	SNARE-like superfamily protein	[more]
AT5G02280.1	1.0e-13	30.07	SNARE-like superfamily protein	[more]

BLAST of CmoCh15G011200 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449456339\|ref\|XP_004145907.1\|	2.1e-93	97.04	PREDICTED: trafficking protein particle complex subunit 1 [Cucumis sativus]	[more]
gi\|659074318\|ref\|XP_008437540.1\|	1.1e-92	96.45	PREDICTED: trafficking protein particle complex subunit 1 [Cucumis melo]	[more]
gi\|590673301\|ref\|XP_007038853.1\|	1.9e-86	89.88	SNARE-like superfamily protein isoform 1 [Theobroma cacao]	[more]
gi\|1012108459\|ref\|XP_015959336.1\|	2.1e-85	89.29	PREDICTED: trafficking protein particle complex subunit 1-like [Arachis duranens...	[more]
gi\|566210554\|ref\|XP_006372361.1\|	3.6e-85	87.50	synbindin family protein [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007233	TRAPPC
IPR011012	Longin-like_dom_sf

Vocabulary: **Biological Process**
Term	Definition
GO:0006810	transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0030008	TRAPP complex

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006888	ER to Golgi vesicle-mediated transport
biological_process	GO:0010413	glucuronoxylan metabolic process
biological_process	GO:0009832	plant-type cell wall biogenesis
biological_process	GO:0045492	xylan biosynthetic process
biological_process	GO:0006810	transport
biological_process	GO:0016192	vesicle-mediated transport
cellular_component	GO:0005801	cis-Golgi network
cellular_component	GO:0005829	cytosol
cellular_component	GO:0030008	TRAPP complex
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh15G011200.1	CmoCh15G011200.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007233	Trafficking protein particle complex subunit	PANTHER	PTHR23249	SYNBINDIN	coord: 1..168 score: 1.1
IPR007233	Trafficking protein particle complex subunit	PFAM	PF04099	Sybindin	coord: 24..167 score: 2.2
IPR007233	Trafficking protein particle complex subunit	SMART	SM01399	Sybindin_2	coord: 23..168 score: 3.6
IPR011012	Longin-like domain	unknown	SSF64356	SNARE-like	coord: 23..168 score: 3.2
None	No IPR available	GENE3D	G3DSA:3.30.450.70		coord: 23..168 score: 6.2
None	No IPR available	PANTHER	PTHR23249:SF16	TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 1	coord: 1..168 score: 1.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh15G011200	Cucsa.201730	Cucumber (Gy14) v1	cgycmoB0600
CmoCh15G011200	CmaCh15G010630	Cucurbita maxima (Rimu)	cmacmoB287
CmoCh15G011200	CmaCh02G010860	Cucurbita maxima (Rimu)	cmacmoB584
CmoCh15G011200	Cla004935	Watermelon (97103) v1	cmowmB262
CmoCh15G011200	Csa5G139910	Cucumber (Chinese Long) v2	cmocuB279
CmoCh15G011200	MELO3C005845	Melon (DHL92) v3.5.1	cmomeB246
CmoCh15G011200	ClCG01G000850	Watermelon (Charleston Gray)	cmowcgB243
CmoCh15G011200	CSPI05G03630	Wild cucumber (PI 183967)	cmocpiB288
CmoCh15G011200	Lsi09G000730	Bottle gourd (USVL1VR-Ls)	cmolsiB249
CmoCh15G011200	Cp4.1LG13g02750	Cucurbita pepo (Zucchini)	cmocpeB268
CmoCh15G011200	Cp4.1LG05g06360	Cucurbita pepo (Zucchini)	cmocpeB293
CmoCh15G011200	MELO3C005845.2	Melon (DHL92) v3.6.1	cmomedB278
CmoCh15G011200	CsaV3_5G000990	Cucumber (Chinese Long) v3	cmocucB0338
CmoCh15G011200	Cla97C01G000930	Watermelon (97103) v2	cmowmbB266
CmoCh15G011200	Bhi12G000675	Wax gourd	cmowgoB0361
CmoCh15G011200	CsGy5G000870	Cucumber (Gy14) v2	cgybcmoB575
CmoCh15G011200	Carg08394	Silver-seed gourd	carcmoB0964
CmoCh15G011200	Carg27017	Silver-seed gourd	carcmoB0782

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh15G011200	CmoCh02G011040	Cucurbita moschata (Rifu)	cmocmoB251

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh15G011200	Watermelon (97103) v2	cmowmbB289
CmoCh15G011200	Cucurbita moschata (Rifu)	cmocmoB193
CmoCh15G011200	Cucurbita moschata (Rifu)	cmocmoB236
CmoCh15G011200	Cucurbita moschata (Rifu)	cmocmoB243
CmoCh15G011200	Cucumber (Gy14) v1	cgycmoB0703
CmoCh15G011200	Cucurbita maxima (Rimu)	cmacmoB319
CmoCh15G011200	Cucurbita maxima (Rimu)	cmacmoB403
CmoCh15G011200	Wild cucumber (PI 183967)	cmocpiB278
CmoCh15G011200	Cucumber (Chinese Long) v2	cmocuB271
CmoCh15G011200	Watermelon (Charleston Gray)	cmowcgB256
CmoCh15G011200	Watermelon (97103) v1	cmowmB260
CmoCh15G011200	Cucurbita pepo (Zucchini)	cmocpeB270
CmoCh15G011200	Cucurbita pepo (Zucchini)	cmocpeB264
CmoCh15G011200	Cucumber (Gy14) v2	cgybcmoB463
CmoCh15G011200	Melon (DHL92) v3.6.1	cmomedB308
CmoCh15G011200	Silver-seed gourd	carcmoB1325