Cp4.1LG05g06360 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG05g06360
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionTrafficking particle complex subunit 1
LocationCp4.1LG05 : 3883241 .. 3888960 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAACAAAGAGATCAGTTTCGACTTGGCGCGCAGCGACCGATTACTAGAGAGCGATTAGCATATCATCGGAAGAGTCTTTGGCGCCGTGAAGCTCCGATCTGCTGCCGTTGTCGCCGGTAATCATTGCTTAACCGATTAAGAATTTGGTCATTGTATCCATCGCAGCCTCTTTTCTGCCACCTTTGCTCTCTGAGGTTTCATCTTTCTCGACTCCGTTGATTCTCCTTCTTGAATTTGTCACCGTCCAGCTCCATCACGAACTCTCTCCAGTCTAGGTACGTTCTCTGCATTGAGTGGTTTGTGGAAAGGCTAAAAGGAAATGCATCTGTTTCTTTAGGTCGAGCCATACAGATTCTTGCTGAATTGAATCCTGATCTGATTCGCCTTAGATTTTACACATTGGCGATTTTTGTTTTAATCTCTATGAATTATAATTTTTCCAATTTATTATTTTCTTCCGCTTTTCTGGATTAGATCCCATGTATTTATTGTTTTTCTTATCACCTCCCTTGCAATCCTACCAGAGAAAACGAGTCAGGTAAATGAAGAAGCGGGGAAGAACTGAACTCTTTGTTGCTTTGCTAGGCTACTGATTGTAGAGTCGAGTGAAAATGTTGGGAGTTTGGTCAGATTTTCAGATTTGTAGACCATTTTCGTATGATCATTGTTTTGATTCAATTTAGTCTTTCCCAGGAACCATGCAGTTCTTTGGTGGGTCAGAGATTAGCCCTTCGCCTCCGGTCCCAACAGCAACTGGAAATAATGTGCATATGATGTATATTTTCAATAGGAGTGGAGTTTGCTTGTTTTACAGGGAGTGGAACCGGCCTCTTCGGACATTGAATCCCCAGCAAGACCACAAACTTATGTTTGGTTTGCTCTTCTCTCTCAAATCCTTTACTGCCAAGATGGACCCAACCAGGTTTATCTTTCTTACTTCACTAGGAAATTACTTTGGTTTTTGGGGGTGCCTAGTTAAAGGAATGATCCAACAAGATGGGAGATTGATACGAACCATATTTTTATGTCTTAGTAACTCAACAAATACAGTGCTCCTTGATGGTCTGGTGGCAATAACTAATATCAAATTTAATTTGATTGTAGATTTAGATTTCGACTTTTCCAAGTCTTATCTTATTGAGAAGAGATGAGCTTTTTTTGGGAGTTAGATTCTGAATTTGAAGTGATGGCCTTCTTTTTTTTTCTTTTTTGGTATAGTGCTGATAAAGGCAATCTTGGAGTGCCTCAGTTGCCTGGCCAAGGTTGTTCATTTCACAGTTTTCGTACAAATACTTACAAGCTCAGTTTTACTGAAACTCCATCAGGGATAAAGGTTATTTCAACCTTCCTCTCTCTGTTCTCTTTCATATTATCCGCTGTAGGTTCATGCATGTCTACTCGAATTGTTTAGTTAAATATCTTGCTATATCACTTAATGAAACTAATGTTTGGTTTATGTCATTTTGTAAATTTATTCATTGTTATTATCATCGTTATTTGACAAGGCAGAACAGGGCTGGGGTCTTTCTTCTCTACACTTTCTTCTTGCTTTTCTGTCTTGTTCTAATAAAGTTCAGTTTCCTTGGTGATAATTAGTACTTCCAATGAACCTCCTTTTTGTTTCTTGTTTTATTCTTGAAGAGTTGAAGTTGGACACTTTGAAGAAGCCCCGTGAAGCTGCTGTTTTAAAATTGCTGCTTTTGAGAAATAATTAACCTGTGGTGCAAAATGGGGATCCTTGCCTTGAACTATAGTGTTGCATTGCTTGATTGATAACTTAGTTTAAAGTTCAATTTTGTTTAAAATGATGGATTATTTCTTTTGTTTTCAGATTATCCTGGTTACCCATCCTAGAACCGGTGATCTAAGGGACTCATTAAAGTACATATACAATTTGTATGTTGAATATGCAGTGAGAAATCCGCTCTACAATCCAGGAACCACACTCAGGTAAATTGTTAGACACGATTGATGCATAATTCCTACAGACCAACTGTAGTAATTTAATCCAAAGAAACTATGTTTGAAGTCTTGCAAAACAAATTCAATTTCTTTGATGAATTTGAACTTTGTAATGCATGCGTTTATTAGTTTCAGTTTACAAATGATCAATGACGTCAGGCATTGAGAAACTTTTATTGGTGCTTGCACCTTAGCTGTAAATTCTTTGTCTCAGAGGTCCGTTTAGGAACCTTTTTTTTATTCTCTAGATTCTCTCGTTAGGCTAAATTACAACTTTAGTCCTTGGGGTTTGGGCTTGGGTTCAATTTGATTTCTATGATTTTAATATTTCATTATAGTCTTGTGGTTAGGTTTTTTTCTCCCATTTTTCATGTGGAAAAGAGAGACAATAAGTTTAACTTTACCCATGCCTAAAGTTTAATTTGGGTAAAAAAGTAATAAAAGAAGTTGGGTTGGGTGAGTATTCAGGTAAAGAGTTAACAGGTTTGTGTAAAAAAAAAAAAAAAAAAAAGGTTTTGGGGACGGGGGTTTTGAAATATGAAAGAGTAGGCGACTTAAGACTTAGGTTGGTTGCACAACTTGCTTTCCTCTATTTTTGACTCAACCACGATACAATCAACAATTTAACCTTTAGATATGCCTTATATTGAATGGCAGCTCACCGCCCTTCGTTGCCCCTTTCAAAGAAAAAGAGTTGTGGAAGAAAACTATTAACACCTCATAATGGTAGAGACATTTATGGGAGATTTGACAAAGTTATATGGACTATGATGAAAATTTTAAAACCATATAGTCAAAATTGAAACCAAATTCAAACTATATAGACTGAACTGTTAATTTCAACCCTTTTTTACCTGAAAGTTTTACGTTGGAGGATATATATCCCTTTCTTAACTTTTCCTCTACTTCTTTTCACAAAAAAATTTAAACTTTTCTACAGACTTAACCCCCCCTCCAAACATTCCATGCTCGCTACGGTATAGTTTCTTTTTAATGAAAATAAAGTTATTCTTGTTTTTCCTGGCAGCTCAATATTGACACTATCTTTGATTAATAATTTGATTTGGCTTTCTGTAGGTGTGAGCTATTCAATACAAGTCTTGACCAATATGTAAGGAGCATATCATAGAAATCAAAGGTAGCTGACTGCTCTGCCATTTTAGTTTCATTCAAGTCGTCATATGCTTTCTGTCTCTTGTTGATGAATGAATGCGATTTATTGAACAATGGTACAGTTGCAGGCCATTAGAACCTCCTTGTCGAAAAATTCCTACATTGGAGTTTATTTTTTATTCCATTGGTTGGACTCAAGATAGTGCACCGGCATGACTTTCTTTTTTTTTTTTTTTTCGTTTCTTTTTTTTTTTTTCCCTCATAATTTTTGTGGTGACTTATGGTGTTGCGATAGTGGTGGAAAGAGGTCTTTTTTTAAAAAAAAAAAGGAATTCTAGTACAAATGTTTGCTGCTCATGTATTATTTGCTGCAATTGCAGCTATATTTCTTGTTTCATCTACTCACATACATACAAGGAGTCCTGTGTAAAAATGTAAAGGTTTAAAACGGGAGAAGATTATGTTAAATTACCTTATTAACCGCTTTCACCTTTCCATTATCTCTTCATCAATATCTTGTTATTTGTTTCAACCCTAGTATGCACCTCCATTAAATAATGCTAGTTTCTTTTTCCTTTTTGAGAATTTGATATTTGTAAGTGTCTAGGCCAACTTGTATACACCTCAACTAATCTTAGAAGACAATTTCCTACTCTTATTACATTTAGTTGTCAAGGAAACTCATTGGATATTGATTCCTAGGTTGGTGACTACCTTAGTTTGAAACTATTTTGTCTAAGCCATTGACTATTTATCACTACCCTCATTGATCAACAAGCCAACCACACGTTGGTTTAGGAAGTTTGCCATAGTGTTAACTCTTCCTTTGGGTTCCCAAGTCATTAGGAATAGATTTTGGTCCCTTTAAGGTTGATAGACCTTCATCTCTTGGTTCAACGATCAACTCTATCTCCTGATATTTATCACACTGTCTCCCAATGAAGTTAATAGGATTCCCAATGAGGCATACACCAACTTAAGGAAAATCAAGGTCAAAATTGAGGCCCCCATGGTCTGTTGACGCTTTAAGTCTGTATTGTGCTATGCCCACGGCTGTTGTGTTGCACTGCTGTGGTAATGGAAGCTAGATCTCTTTCAGTACTATAATTTCGTAACGTGTTTGTTTGGGCTAAAAAAAGATGTCAATGTACAACCATCATCCATTAGGTATACAATGTCGGTAAGCAAGTAACATAGCAGAAAACCGTCGACACTGGATTTGGATTTGATGTCAATATTGAATTGTCGATGCATAGGTTTGATGGCATACTTTTGTGTGGTAGTTTTAAATTGTATCATTGTTCTTTTTGTATAGGATTGTATCATAACTAAGGCTGTAAATTTTCGTTACAACATTTTCATTGTATCATAAAAGTATTAACAAAATATTACTAATATGAAACTGACATTAATACTAAACAAAATGGTAATTTTGTGGGTGTTTTGATTTGAATAGTTACTAGTTAGTGATGATTGAAATGGGAAGATGGTTTGAGAGACTGAGACTGAGAGAAAATGACAAAGGGAAAGACTGCACACTGAGATGGAAGACATTGACAGACAGTGAAGAAAGGGAGAAAGGATTCCCTTTTTCCCTCTCTTTTGGTTACTAGTTGGAGTTTGCATCAGACAAAATCCAGATTTCTTTTGAAATTGGTTCTTAATAATTATGACCCTTTTCACATTCCAACCCTCAAAACCAAACCCATTTCTTCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCATGGCATCACCCAAAAATTTCCCCCTTTACAAACAAAACTCACAAATTTATATTCTTTCGTTACACTGTTCTTCCTCTTCTGGGTTGCTCTCAAATCCCTTCTTCTTTGCTTTCTCTGAAAGAAAAATCTGCCAAAATGAAAAGAAGAAACCCAAATCATTATCAGTTTTGAATATTTCAAGCTCTGTGTTACATAATCAATGGTGGAACTGGGAACTGGGAATGAGTAGTATACCTTTACAAGATAGACTTCTTGACCTTTCTTGTGAGGCCGCTGTTTCTGACCTTGAGAACAATAAAGGTTTCTCTGACCACGAAAATAAATTCAACATTAGTGGCATTTTCGCGATTGTTCGGCATAATTTTGGTCTAAAAAGTTGGTTTTTACCTGTGGATGCGTTGAAGGATCTTTTACAGTGTAAAATGGCGCTTTGAATCCCGTCGTGTTGCTGCAACAACGAATCATCTCTTCGGTTCAACGGAGGCGCCACCGCCAATCCACCGGTCGCTGACGCCGATTTGCTCTTACCCAGATGCTTACCTACCAACCGAATCCCCGCCGGCAGGCCATTATCGTGCTTTTCTCTCGCCGGAGAATCCACTGTCGTCGACAGATTGTCGCTGTAGTCAGTGGGTTTCTTCAGAACCTTAGGCTTAATGAGCCTCAAATACTTCTGTACTGCCTCCTTCGAGAACCGTCTCGCCGTTGTCGTCGTTGTCGCCGGAGCCTCACAAGGGTCGGCTGGAAAAACACCTCCGATCCTCCTGGTACTGTTGTCTCTAGAAAGATTCGAGCTCAAAACTCTGCGTTCTACTTGTTCTGTTCCGCCGGGTGCTCTGTTTTTGGCCATTGATCTCTGTTTGTTGAAGATGGAAACAGGGAACTTGGGGGCCG

mRNA sequence

ATGAAACAAAGAGATCAGTTTCGACTTGGCGCGCAGCGACCGATTACTAGAGAGCGATTAGCATATCATCGGAAGAGTCTTTGGCGCCGTGAAGCTCCGATCTGCTGCCGTTGTCGCCGGTAATCATTGCTTAACCGATTAAGAATTTGGTCATTGTATCCATCGCAGCCTCTTTTCTGCCACCTTTGCTCTCTGAGGTTTCATCTTTCTCGACTCCGTTGATTCTCCTTCTTGAATTTGTCACCGTCCAGCTCCATCACGAACTCTCTCCAGTCTAGGAACCATGCAGTTCTTTGGTGGGTCAGAGATTAGCCCTTCGCCTCCGGTCCCAACAGCAACTGGAAATAATGTGCATATGATGTATATTTTCAATAGGAGTGGAGTTTGCTTGTTTTACAGGGAGTGGAACCGGCCTCTTCGGACATTGAATCCCCAGCAAGACCACAAACTTATGTTTGGTTTGCTCTTCTCTCTCAAATCCTTTACTGCCAAGATGGACCCAACCAGTGCTGATAAAGGCAATCTTGGAGTGCCTCAGTTGCCTGGCCAAGGTTGTTCATTTCACAGTTTTCGTACAAATACTTACAAGCTCAGTTTTACTGAAACTCCATCAGGGATAAAGATTATCCTGGTTACCCATCCTAGAACCGGTGATCTAAGGGACTCATTAAAGTACATATACAATTTGTATGTTGAATATGCAGTGAGAAATCCGCTCTACAATCCAGGAACCACACTCAGGTGTGAGCTATTCAATACAAGTCTTGACCAATATGTAAGGAGCATATCATAGAAATCAAAGTTGCAGGCCATTAGAACCTCCTTGTCGAAAAATTCCTACATTGGAGTTTATTTTTTATTCCATTGGTTGGACTCAAGATAGTGCACCGGCATGACTTTCTTTTTTTTTTTTTTTTCGTTTCTTTTTTTTTTTTTCCCTCATAATTTTTGTGGTGACTTATGGTGTTGCGATAGTGGTGGAAAGAGGTCTTTTTTTAAAAAAAAAAAGGAATTCTAGTACAAATGTTTGCTGCTCATGTATTATTTGCTGCAATTGCAGCTATATTTCTTGTTTCATCTACTCACATACATACAAGGAGTCCTGTGTAAAAATGTAAAGGTTTAAAACGGGAGAAGATTATGTTAAATTACCTTATTAACCGCTTTCACCTTTCCATTATCTCTTCATCAATATCTTGTTATTTGTTTCAACCCTAGTATGCACCTCCATTAAATAATGCTAGTTTCTTTTTCCTTTTTGAGAATTTGATATTTGTAAGTGTCTAGGCCAACTTGTATACACCTCAACTAATCTTAGAAGACAATTTCCTACTCTTATTACATTTAGTTGTCAAGGAAACTCATTGGATATTGATTCCTAGGTTGGTGACTACCTTAGTTTGAAACTATTTTGTCTAAGCCATTGACTATTTATCACTACCCTCATTGATCAACAAGCCAACCACACGTTGGTTTAGGAAGTTTGCCATAGTGTTAACTCTTCCTTTGGGTTCCCAAGTCATTAGGAATAGATTTTGGTCCCTTTAAGGTTGATAGACCTTCATCTCTTGGTTCAACGATCAACTCTATCTCCTGATATTTATCACACTGTCTCCCAATGAAGTTAATAGGATTCCCAATGAGGCATACACCAACTTAAGGAAAATCAAGGTCAAAATTGAGGCCCCCATGGTCTGTTGACGCTTTAAGTCTGTATTGTGCTATGCCCACGGCTGTTGTGTTGCACTGCTGTGGTAATGGAAGCTAGATCTCTTTCAGTACTATAATTTCGTAACGTGTTTGTTTGGGCTAAAAAAAGATGTCAATGTACAACCATCATCCATTAGGTATACAATGTCGGTAAGCAAGTAACATAGCAGAAAACCGTCGACACTGGATTTGGATTTGATGTCAATATTGAATTGTCGATGCATAGGTTTGATGGCATACTTTTGTGTGGTAGTTTTAAATTGTATCATTGTTCTTTTTGTATAGGATTGTATCATAACTAAGGCTGTAAATTTTCGTTACAACATTTTCATTGTATCATAAAAGTATTAACAAAATATTACTAATATGAAACTGACATTAATACTAAACAAAATGGTAATTTTGTGGGTGTTTTGATTTGAATAGTTACTAGTTAGTGATGATTGAAATGGGAAGATGGTTTGAGAGACTGAGACTGAGAGAAAATGACAAAGGGAAAGACTGCACACTGAGATGGAAGACATTGACAGACAGTGAAGAAAGGGAGAAAGGATTCCCTTTTTCCCTCTCTTTTGGTTACTAGTTGGAGTTTGCATCAGACAAAATCCAGATTTCTTTTGAAATTGGTTCTTAATAATTATGACCCTTTTCACATTCCAACCCTCAAAACCAAACCCATTTCTTCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCATGGCATCACCCAAAAATTTCCCCCTTTACAAACAAAACTCACAAATTTATATTCTTTCGTTACACTGTTCTTCCTCTTCTGGGTTGCTCTCAAATCCCTTCTTCTTTGCTTTCTCTGAAAGAAAAATCTGCCAAAATGAAAAGAAGAAACCCAAATCATTATCAGTTTTGAATATTTCAAGCTCTGTGTTACATAATCAATGGTGGAACTGGGAACTGGGAATGAGTAGTATACCTTTACAAGATAGACTTCTTGACCTTTCTTGTGAGGCCGCTGTTTCTGACCTTGAGAACAATAAAGGTTTCTCTGACCACGAAAATAAATTCAACATTAGTGGCATTTTCGCGATTGTTCGGCATAATTTTGGTCTAAAAAGTTGGTTTTTACCTGTGGATGCGTTGAAGGATCTTTTACAGTGTAAAATGGCGCTTTGAATCCCGTCGTGTTGCTGCAACAACGAATCATCTCTTCGGTTCAACGGAGGCGCCACCGCCAATCCACCGGTCGCTGACGCCGATTTGCTCTTACCCAGATGCTTACCTACCAACCGAATCCCCGCCGGCAGGCCATTATCGTGCTTTTCTCTCGCCGGAGAATCCACTGTCGTCGACAGATTGTCGCTGTAGTCAGTGGGTTTCTTCAGAACCTTAGGCTTAATGAGCCTCAAATACTTCTGTACTGCCTCCTTCGAGAACCGTCTCGCCGTTGTCGTCGTTGTCGCCGGAGCCTCACAAGGGTCGGCTGGAAAAACACCTCCGATCCTCCTGGTACTGTTGTCTCTAGAAAGATTCGAGCTCAAAACTCTGCGTTCTACTTGTTCTGTTCCGCCGGGTGCTCTGTTTTTGGCCATTGATCTCTGTTTGTTGAAGATGGAAACAGGGAACTTGGGGGCCG

Coding sequence (CDS)

ATGCAGTTCTTTGGTGGGTCAGAGATTAGCCCTTCGCCTCCGGTCCCAACAGCAACTGGAAATAATGTGCATATGATGTATATTTTCAATAGGAGTGGAGTTTGCTTGTTTTACAGGGAGTGGAACCGGCCTCTTCGGACATTGAATCCCCAGCAAGACCACAAACTTATGTTTGGTTTGCTCTTCTCTCTCAAATCCTTTACTGCCAAGATGGACCCAACCAGTGCTGATAAAGGCAATCTTGGAGTGCCTCAGTTGCCTGGCCAAGGTTGTTCATTTCACAGTTTTCGTACAAATACTTACAAGCTCAGTTTTACTGAAACTCCATCAGGGATAAAGATTATCCTGGTTACCCATCCTAGAACCGGTGATCTAAGGGACTCATTAAAGTACATATACAATTTGTATGTTGAATATGCAGTGAGAAATCCGCTCTACAATCCAGGAACCACACTCAGGTGTGAGCTATTCAATACAAGTCTTGACCAATATGTAAGGAGCATATCATAG

Protein sequence

MQFFGGSEISPSPPVPTATGNNVHMMYIFNRSGVCLFYREWNRPLRTLNPQQDHKLMFGLLFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHPRTGDLRDSLKYIYNLYVEYAVRNPLYNPGTTLRCELFNTSLDQYVRSIS
Homology
[Close]
BLAST of Cp4.1LG05g06360 vs. Swiss-Prot
Match: TPPC1_DICDI (Trafficking protein particle complex subunit 1 OS=Dictyostelium discoideum GN=trappc1-1 PE=3 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 7.4e-30
Identity = 57/147 (38.78%), Postives = 92/147 (62.59%), Query Frame = 1 

Query: 23  VHMMYIFNRSGVCLFYREWNRPLRTLNPQQDHKLMFGLLFSLKSFTAKMDPTSADKGNLG 82
           ++ +YIFN+ G C++Y +WN+  ++ N  +D KL+FG+L+SLK+F     P   D     
Sbjct: 2   IYNIYIFNKDGTCIYYEDWNKKKQSQNQSEDQKLLFGMLYSLKAFITSSSPKKID----- 61

Query: 83  VPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHPRTGDLRDSLKYIYN-LYVEYAV 142
                     FH ++T+TYKL + ET S IK I+++ P   DLRD LK IY+ ++VEY +
Sbjct: 62  ------DKTGFHCYKTSTYKLHYYETLSCIKFIIMSDPNVPDLRDDLKKIYSQIFVEYVI 121

Query: 143 RNPLYNPGTTLRCELFNTSLDQYVRSI 169
           +NP+Y  GTT++C+ F   L+ Y++ +
Sbjct: 122 KNPIYKHGTTVKCDTFINQLNLYLKQM 137

[Close]
BLAST of Cp4.1LG05g06360 vs. Swiss-Prot
Match: TPPC1_MOUSE (Trafficking protein particle complex subunit 1 OS=Mus musculus GN=Trappc1 PE=1 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 7.4e-30
Identity = 66/148 (44.59%), Postives = 97/148 (65.54%), Query Frame = 1 

Query: 23  VHMMYIFNRSGVCLFYREWNRPLRTLNP-QQDHKLMFGLLFSLKSFTAKMDPTSADKGNL 82
           VH +Y+F+R+GVCL Y EW+R  +   P ++++KLM+G+LFS++SF +KM P     G  
Sbjct: 3   VHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDG-- 62

Query: 83  GVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHPRTGDLRDSLKYIYN-LYVEYA 142
                      F SF+T+ YKL + ETP+GIK+++ T    G +RD L +IY+ LYVE+ 
Sbjct: 63  -----------FLSFQTSRYKLHYYETPTGIKVVMNTDLGVGPIRDVLHHIYSALYVEFV 122

Query: 143 VRNPLYNPGTTLRCELFNTSLDQYVRSI 169
           V+NPL   G T++ ELF + LD YVRS+
Sbjct: 123 VKNPLCPLGQTVQSELFRSRLDSYVRSL 137

[Close]
BLAST of Cp4.1LG05g06360 vs. Swiss-Prot
Match: TPPC1_RAT (Trafficking protein particle complex subunit 1 OS=Rattus norvegicus GN=Trappc1 PE=2 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 7.4e-30
Identity = 66/148 (44.59%), Postives = 97/148 (65.54%), Query Frame = 1 

Query: 23  VHMMYIFNRSGVCLFYREWNRPLRTLNP-QQDHKLMFGLLFSLKSFTAKMDPTSADKGNL 82
           VH +Y+F+R+GVCL Y EW+R  +   P ++++KLM+G+LFS++SF +KM P     G  
Sbjct: 3   VHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDG-- 62

Query: 83  GVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHPRTGDLRDSLKYIYN-LYVEYA 142
                      F SF+T+ YKL + ETP+GIK+++ T    G +RD L +IY+ LYVE+ 
Sbjct: 63  -----------FLSFQTSRYKLHYYETPTGIKVVMNTDLGVGPIRDVLHHIYSALYVEFV 122

Query: 143 VRNPLYNPGTTLRCELFNTSLDQYVRSI 169
           V+NPL   G T++ ELF + LD YVRS+
Sbjct: 123 VKNPLCPLGQTVQSELFRSRLDSYVRSL 137

[Close]
BLAST of Cp4.1LG05g06360 vs. Swiss-Prot
Match: TPPC1_BOVIN (Trafficking protein particle complex subunit 1 OS=Bos taurus GN=TRAPPC1 PE=2 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 4.8e-29
Identity = 65/148 (43.92%), Postives = 96/148 (64.86%), Query Frame = 1 

Query: 23  VHMMYIFNRSGVCLFYREWNRPLRTLNP-QQDHKLMFGLLFSLKSFTAKMDPTSADKGNL 82
           VH +Y+F+R+GVCL Y EW+R  +   P ++++KLM+G+LFS++SF +KM P     G  
Sbjct: 3   VHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDG-- 62

Query: 83  GVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHPRTGDLRDSLKYIYN-LYVEYA 142
                      F +F+T+ YKL + ETP+GIK+++ T    G +RD L +IY+ LYVE  
Sbjct: 63  -----------FLAFQTSRYKLHYYETPTGIKVVMNTDLGVGPIRDVLHHIYSALYVELV 122

Query: 143 VRNPLYNPGTTLRCELFNTSLDQYVRSI 169
           V+NPL   G T++ ELF + LD YVRS+
Sbjct: 123 VKNPLCPLGQTVQSELFRSRLDSYVRSL 137

[Close]
BLAST of Cp4.1LG05g06360 vs. Swiss-Prot
Match: TPPC1_HUMAN (Trafficking protein particle complex subunit 1 OS=Homo sapiens GN=TRAPPC1 PE=1 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 4.8e-29
Identity = 65/148 (43.92%), Postives = 96/148 (64.86%), Query Frame = 1 

Query: 23  VHMMYIFNRSGVCLFYREWNRPLRTLNP-QQDHKLMFGLLFSLKSFTAKMDPTSADKGNL 82
           VH +Y+F+R+GVCL Y EW+R  +   P ++++KLM+G+LFS++SF +KM P     G  
Sbjct: 3   VHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDG-- 62

Query: 83  GVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHPRTGDLRDSLKYIYN-LYVEYA 142
                      F +F+T+ YKL + ETP+GIK+++ T    G +RD L +IY+ LYVE  
Sbjct: 63  -----------FLAFQTSRYKLHYYETPTGIKVVMNTDLGVGPIRDVLHHIYSALYVELV 122

Query: 143 VRNPLYNPGTTLRCELFNTSLDQYVRSI 169
           V+NPL   G T++ ELF + LD YVRS+
Sbjct: 123 VKNPLCPLGQTVQSELFRSRLDSYVRSL 137

[Close]
BLAST of Cp4.1LG05g06360 vs. TrEMBL
Match: A0A0A0KM26_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G139910 PE=4 SV=1)

HSP 1 Score: 345.9 bits (886), Expect = 2.8e-92
Identity = 159/168 (94.64%), Postives = 165/168 (98.21%), Query Frame = 1 

Query: 1   MQFFGGSEISPSPPVPTATGNNVHMMYIFNRSGVCLFYREWNRPLRTLNPQQDHKLMFGL 60
           MQFFGGSEISPSPPVPTATGNNVHMMYIFNR+GVCLFYREWNRPLRTLNPQQDHKLMFGL
Sbjct: 1   MQFFGGSEISPSPPVPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60

Query: 61  LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120
           LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP
Sbjct: 61  LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120

Query: 121 RTGDLRDSLKYIYNLYVEYAVRNPLYNPGTTLRCELFNTSLDQYVRSI 169
           RTGDLRD LKYIYNLYVEY V+NP+Y+PGT +RCELFNTSLDQYVR+I
Sbjct: 121 RTGDLRDPLKYIYNLYVEYVVKNPIYSPGTPIRCELFNTSLDQYVRTI 168

[Close]
BLAST of Cp4.1LG05g06360 vs. TrEMBL
Match: A0A061G8H7_THECC (SNARE-like superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_015275 PE=4 SV=1)

HSP 1 Score: 332.0 bits (850), Expect = 4.2e-88
Identity = 151/169 (89.35%), Postives = 159/169 (94.08%), Query Frame = 1 

Query: 1   MQFFGGSEISPSPPVPTATGNNVHMMYIFNRSGVCLFYREWNRPLRTLNPQQDHKLMFGL 60
           MQFFGGSEISPSPPVPT TGNN HMMY+FNR+GVCL YREWNRPL TLNPQQDHKLMFGL
Sbjct: 1   MQFFGGSEISPSPPVPTTTGNNAHMMYVFNRNGVCLLYREWNRPLHTLNPQQDHKLMFGL 60

Query: 61  LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120
           LFSLKS TAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSF ETPSGIKIILVTHP
Sbjct: 61  LFSLKSLTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFMETPSGIKIILVTHP 120

Query: 121 RTGDLRDSLKYIYNLYVEYAVRNPLYNPGTTLRCELFNTSLDQYVRSIS 170
           RTGDLR+ LKYIYNLYVEY  +NPLY PGT++RCELFNT+LDQYVRSI+
Sbjct: 121 RTGDLREPLKYIYNLYVEYVAKNPLYTPGTSIRCELFNTALDQYVRSIA 169

[Close]
BLAST of Cp4.1LG05g06360 vs. TrEMBL
Match: A0A0D2SCA4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G013500 PE=4 SV=1)

HSP 1 Score: 326.2 bits (835), Expect = 2.3e-86
Identity = 147/169 (86.98%), Postives = 159/169 (94.08%), Query Frame = 1 

Query: 1   MQFFGGSEISPSPPVPTATGNNVHMMYIFNRSGVCLFYREWNRPLRTLNPQQDHKLMFGL 60
           MQFFGGSEISPSPPVPTATGNN HMMY+FNR+GVCL YREWNRPL TLNPQQDHKLMFGL
Sbjct: 1   MQFFGGSEISPSPPVPTATGNNAHMMYVFNRNGVCLLYREWNRPLHTLNPQQDHKLMFGL 60

Query: 61  LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120
           LFSLKS TAKMDPT+A+KGNLG+PQLPGQGCSFHSFRTNTYKLSF ETPSGIK ILVT+P
Sbjct: 61  LFSLKSLTAKMDPTNAEKGNLGIPQLPGQGCSFHSFRTNTYKLSFMETPSGIKFILVTNP 120

Query: 121 RTGDLRDSLKYIYNLYVEYAVRNPLYNPGTTLRCELFNTSLDQYVRSIS 170
           RTGDLR++LKYIYNLYVEY  +NPLY PGT +RCELFNT+LDQYVRSI+
Sbjct: 121 RTGDLRETLKYIYNLYVEYVAKNPLYTPGTLIRCELFNTALDQYVRSIA 169

[Close]
BLAST of Cp4.1LG05g06360 vs. TrEMBL
Match: A0A0B0PK56_GOSAR (Trafficking particle complex subunit 1 OS=Gossypium arboreum GN=F383_06510 PE=4 SV=1)

HSP 1 Score: 326.2 bits (835), Expect = 2.3e-86
Identity = 147/169 (86.98%), Postives = 159/169 (94.08%), Query Frame = 1 

Query: 1   MQFFGGSEISPSPPVPTATGNNVHMMYIFNRSGVCLFYREWNRPLRTLNPQQDHKLMFGL 60
           MQFFGGSEISPSPPVPTATGNN HMMY+FNR+GVCL YREWNRPL TLNPQQDHKLMFGL
Sbjct: 1   MQFFGGSEISPSPPVPTATGNNAHMMYVFNRNGVCLLYREWNRPLHTLNPQQDHKLMFGL 60

Query: 61  LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120
           LFSLKS TAKMDPT+A+KGNLG+PQLPGQGCSFHSFRTNTYKLSF ETPSGIK ILVT+P
Sbjct: 61  LFSLKSLTAKMDPTNAEKGNLGIPQLPGQGCSFHSFRTNTYKLSFMETPSGIKFILVTNP 120

Query: 121 RTGDLRDSLKYIYNLYVEYAVRNPLYNPGTTLRCELFNTSLDQYVRSIS 170
           RTGDLR++LKYIYNLYVEY  +NPLY PGT +RCELFNT+LDQYVRSI+
Sbjct: 121 RTGDLRETLKYIYNLYVEYVAKNPLYTPGTLIRCELFNTALDQYVRSIA 169

[Close]
BLAST of Cp4.1LG05g06360 vs. TrEMBL
Match: B9MX74_POPTR (Synbindin family protein OS=Populus trichocarpa GN=POPTR_0017s00860g PE=4 SV=1)

HSP 1 Score: 325.1 bits (832), Expect = 5.1e-86
Identity = 147/169 (86.98%), Postives = 157/169 (92.90%), Query Frame = 1 

Query: 1   MQFFGGSEISPSPPVPTATGNNVHMMYIFNRSGVCLFYREWNRPLRTLNPQQDHKLMFGL 60
           MQFFGGS+ISPSPP PTA+GNN HMMY+FNR+GVCL YREWNRPL TLN QQDHKLMFGL
Sbjct: 1   MQFFGGSDISPSPPAPTASGNNAHMMYVFNRNGVCLLYREWNRPLHTLNAQQDHKLMFGL 60

Query: 61  LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120
           LFSLKS TAKMDPTS DKGNLGVPQLPGQGCSFHSFRTNTYKLSF ETPSGIKIIL+THP
Sbjct: 61  LFSLKSLTAKMDPTSMDKGNLGVPQLPGQGCSFHSFRTNTYKLSFMETPSGIKIILITHP 120

Query: 121 RTGDLRDSLKYIYNLYVEYAVRNPLYNPGTTLRCELFNTSLDQYVRSIS 170
           +TGDLR+SLKYIYNLYVEY V+NP+Y PG  +RCELFNTSLDQYVRSIS
Sbjct: 121 KTGDLRESLKYIYNLYVEYVVKNPIYTPGAPIRCELFNTSLDQYVRSIS 169

[Close]
BLAST of Cp4.1LG05g06360 vs. TAIR10
Match: AT1G51160.1 (AT1G51160.1 SNARE-like superfamily protein)

HSP 1 Score: 321.6 bits (823), Expect = 2.8e-88
Identity = 145/169 (85.80%), Postives = 160/169 (94.67%), Query Frame = 1 

Query: 1   MQFFGGSEISPSPPVPTATGNNVHMMYIFNRSGVCLFYREWNRPLRTLNPQQDHKLMFGL 60
           MQFFGGSEISPSPPVPTA+GNN HMMY+FNR+GVCL Y+EWNRPL TLNPQQDHKLMFGL
Sbjct: 1   MQFFGGSEISPSPPVPTASGNNAHMMYVFNRNGVCLLYKEWNRPLHTLNPQQDHKLMFGL 60

Query: 61  LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120
           LFSLKS TAKMDP +ADKGNLGVPQLPGQGCSFHSFRTNTYKLSF ETPSGIKIILVTHP
Sbjct: 61  LFSLKSLTAKMDPVNADKGNLGVPQLPGQGCSFHSFRTNTYKLSFMETPSGIKIILVTHP 120

Query: 121 RTGDLRDSLKYIYNLYVEYAVRNPLYNPGTTLRCELFNTSLDQYVRSIS 170
           +TGDLR+SLKYIY+LYVEY V+NP+Y+PG+ ++ ELFNT+LDQYVRSIS
Sbjct: 121 KTGDLRESLKYIYSLYVEYVVKNPIYSPGSPIKSELFNTALDQYVRSIS 169

[Close]
BLAST of Cp4.1LG05g06360 vs. TAIR10
Match: AT5G02280.1 (AT5G02280.1 SNARE-like superfamily protein)

HSP 1 Score: 72.0 bits (175), Expect = 3.9e-13
Identity = 41/146 (28.08%), Postives = 69/146 (47.26%), Query Frame = 1 

Query: 23  VHMMYIFNRSGVCLFYREWNRPLRTLNPQQDHKLMFGLLFSLKSFTAKMDPTSADKGNLG 82
           ++ +YI N+SG  +FY++     R      D   +  L  S+ + + ++ P +       
Sbjct: 4   IYSLYIINKSGGLIFYKDCGTKGRM--DTNDSLRVASLWHSMHAISQQLSPVN------- 63

Query: 83  VPQLPGQGCS-FHSFRTNTYKLSFTETPSGIKIILVTHPRTGDLRDSLKYIYNLYVEYAV 142
                  GCS       +T+ L   ++  G K  +V  P T  +   L+YIY LY +Y +
Sbjct: 64  -------GCSGIELLEADTFDLHCFQSLPGTKFFVVCEPGTPHMESLLRYIYELYTDYVL 123

Query: 143 RNPLYNPGTTLRCELFNTSLDQYVRS 168
           +NP Y     +RCELF+ +L Q V+S
Sbjct: 124 KNPFYEIEMPIRCELFDINLTQAVQS 133

[Close]
BLAST of Cp4.1LG05g06360 vs. NCBI nr
Match: gi|659074318|ref|XP_008437540.1| (PREDICTED: trafficking protein particle complex subunit 1 [Cucumis melo])

HSP 1 Score: 346.3 bits (887), Expect = 3.1e-92
Identity = 160/168 (95.24%), Postives = 164/168 (97.62%), Query Frame = 1 

Query: 1   MQFFGGSEISPSPPVPTATGNNVHMMYIFNRSGVCLFYREWNRPLRTLNPQQDHKLMFGL 60
           MQFFGGSEISPSPPVPTATGNNVHMMYIFNR+GVCLFYREWNRPLRTLNPQQDHKLMFGL
Sbjct: 1   MQFFGGSEISPSPPVPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60

Query: 61  LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120
           LFSLKSFTAKMDPTS DKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP
Sbjct: 61  LFSLKSFTAKMDPTSVDKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120

Query: 121 RTGDLRDSLKYIYNLYVEYAVRNPLYNPGTTLRCELFNTSLDQYVRSI 169
           RTGDLRD LKYIYNLYVEY V+NPLY+PGT +RCELFNTSLDQYVRSI
Sbjct: 121 RTGDLRDPLKYIYNLYVEYVVKNPLYSPGTPIRCELFNTSLDQYVRSI 168

[Close]
BLAST of Cp4.1LG05g06360 vs. NCBI nr
Match: gi|449456339|ref|XP_004145907.1| (PREDICTED: trafficking protein particle complex subunit 1 [Cucumis sativus])

HSP 1 Score: 345.9 bits (886), Expect = 4.0e-92
Identity = 159/168 (94.64%), Postives = 165/168 (98.21%), Query Frame = 1 

Query: 1   MQFFGGSEISPSPPVPTATGNNVHMMYIFNRSGVCLFYREWNRPLRTLNPQQDHKLMFGL 60
           MQFFGGSEISPSPPVPTATGNNVHMMYIFNR+GVCLFYREWNRPLRTLNPQQDHKLMFGL
Sbjct: 1   MQFFGGSEISPSPPVPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60

Query: 61  LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120
           LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP
Sbjct: 61  LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120

Query: 121 RTGDLRDSLKYIYNLYVEYAVRNPLYNPGTTLRCELFNTSLDQYVRSI 169
           RTGDLRD LKYIYNLYVEY V+NP+Y+PGT +RCELFNTSLDQYVR+I
Sbjct: 121 RTGDLRDPLKYIYNLYVEYVVKNPIYSPGTPIRCELFNTSLDQYVRTI 168

[Close]
BLAST of Cp4.1LG05g06360 vs. NCBI nr
Match: gi|590673301|ref|XP_007038853.1| (SNARE-like superfamily protein isoform 1 [Theobroma cacao])

HSP 1 Score: 332.0 bits (850), Expect = 6.0e-88
Identity = 151/169 (89.35%), Postives = 159/169 (94.08%), Query Frame = 1 

Query: 1   MQFFGGSEISPSPPVPTATGNNVHMMYIFNRSGVCLFYREWNRPLRTLNPQQDHKLMFGL 60
           MQFFGGSEISPSPPVPT TGNN HMMY+FNR+GVCL YREWNRPL TLNPQQDHKLMFGL
Sbjct: 1   MQFFGGSEISPSPPVPTTTGNNAHMMYVFNRNGVCLLYREWNRPLHTLNPQQDHKLMFGL 60

Query: 61  LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120
           LFSLKS TAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSF ETPSGIKIILVTHP
Sbjct: 61  LFSLKSLTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFMETPSGIKIILVTHP 120

Query: 121 RTGDLRDSLKYIYNLYVEYAVRNPLYNPGTTLRCELFNTSLDQYVRSIS 170
           RTGDLR+ LKYIYNLYVEY  +NPLY PGT++RCELFNT+LDQYVRSI+
Sbjct: 121 RTGDLREPLKYIYNLYVEYVAKNPLYTPGTSIRCELFNTALDQYVRSIA 169

[Close]
BLAST of Cp4.1LG05g06360 vs. NCBI nr
Match: gi|823182604|ref|XP_012488565.1| (PREDICTED: trafficking protein particle complex subunit 1 [Gossypium raimondii])

HSP 1 Score: 326.2 bits (835), Expect = 3.3e-86
Identity = 147/169 (86.98%), Postives = 159/169 (94.08%), Query Frame = 1 

Query: 1   MQFFGGSEISPSPPVPTATGNNVHMMYIFNRSGVCLFYREWNRPLRTLNPQQDHKLMFGL 60
           MQFFGGSEISPSPPVPTATGNN HMMY+FNR+GVCL YREWNRPL TLNPQQDHKLMFGL
Sbjct: 1   MQFFGGSEISPSPPVPTATGNNAHMMYVFNRNGVCLLYREWNRPLHTLNPQQDHKLMFGL 60

Query: 61  LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120
           LFSLKS TAKMDPT+A+KGNLG+PQLPGQGCSFHSFRTNTYKLSF ETPSGIK ILVT+P
Sbjct: 61  LFSLKSLTAKMDPTNAEKGNLGIPQLPGQGCSFHSFRTNTYKLSFMETPSGIKFILVTNP 120

Query: 121 RTGDLRDSLKYIYNLYVEYAVRNPLYNPGTTLRCELFNTSLDQYVRSIS 170
           RTGDLR++LKYIYNLYVEY  +NPLY PGT +RCELFNT+LDQYVRSI+
Sbjct: 121 RTGDLRETLKYIYNLYVEYVAKNPLYTPGTLIRCELFNTALDQYVRSIA 169

[Close]
BLAST of Cp4.1LG05g06360 vs. NCBI nr
Match: gi|566210554|ref|XP_006372361.1| (synbindin family protein [Populus trichocarpa])

HSP 1 Score: 325.1 bits (832), Expect = 7.3e-86
Identity = 147/169 (86.98%), Postives = 157/169 (92.90%), Query Frame = 1 

Query: 1   MQFFGGSEISPSPPVPTATGNNVHMMYIFNRSGVCLFYREWNRPLRTLNPQQDHKLMFGL 60
           MQFFGGS+ISPSPP PTA+GNN HMMY+FNR+GVCL YREWNRPL TLN QQDHKLMFGL
Sbjct: 1   MQFFGGSDISPSPPAPTASGNNAHMMYVFNRNGVCLLYREWNRPLHTLNAQQDHKLMFGL 60

Query: 61  LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120
           LFSLKS TAKMDPTS DKGNLGVPQLPGQGCSFHSFRTNTYKLSF ETPSGIKIIL+THP
Sbjct: 61  LFSLKSLTAKMDPTSMDKGNLGVPQLPGQGCSFHSFRTNTYKLSFMETPSGIKIILITHP 120

Query: 121 RTGDLRDSLKYIYNLYVEYAVRNPLYNPGTTLRCELFNTSLDQYVRSIS 170
           +TGDLR+SLKYIYNLYVEY V+NP+Y PG  +RCELFNTSLDQYVRSIS
Sbjct: 121 KTGDLRESLKYIYNLYVEYVVKNPIYTPGAPIRCELFNTSLDQYVRSIS 169

The following BLAST results are available for this feature:
BLAST of Cp4.1LG05g06360 vs. Swiss-Prot
Match NameE-valueIdentityDescription
TPPC1_DICDI7.4e-3038.78Trafficking protein particle complex subunit 1 OS=Dictyostelium discoideum GN=tr... [more]
TPPC1_MOUSE7.4e-3044.59Trafficking protein particle complex subunit 1 OS=Mus musculus GN=Trappc1 PE=1 S... [more]
TPPC1_RAT7.4e-3044.59Trafficking protein particle complex subunit 1 OS=Rattus norvegicus GN=Trappc1 P... [more]
TPPC1_BOVIN4.8e-2943.92Trafficking protein particle complex subunit 1 OS=Bos taurus GN=TRAPPC1 PE=2 SV=... [more]
TPPC1_HUMAN4.8e-2943.92Trafficking protein particle complex subunit 1 OS=Homo sapiens GN=TRAPPC1 PE=1 S... [more]
BLAST of Cp4.1LG05g06360 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KM26_CUCSA2.8e-9294.64Uncharacterized protein OS=Cucumis sativus GN=Csa_5G139910 PE=4 SV=1[more]
A0A061G8H7_THECC4.2e-8889.35SNARE-like superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_015275 PE=4 S... [more]
A0A0D2SCA4_GOSRA2.3e-8686.98Uncharacterized protein OS=Gossypium raimondii GN=B456_007G013500 PE=4 SV=1[more]
A0A0B0PK56_GOSAR2.3e-8686.98Trafficking particle complex subunit 1 OS=Gossypium arboreum GN=F383_06510 PE=4 ... [more]
B9MX74_POPTR5.1e-8686.98Synbindin family protein OS=Populus trichocarpa GN=POPTR_0017s00860g PE=4 SV=1[more]
BLAST of Cp4.1LG05g06360 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G51160.12.8e-8885.80 SNARE-like superfamily protein[more]
AT5G02280.13.9e-1328.08 SNARE-like superfamily protein[more]
BLAST of Cp4.1LG05g06360 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659074318|ref|XP_008437540.1|3.1e-9295.24PREDICTED: trafficking protein particle complex subunit 1 [Cucumis melo][more]
gi|449456339|ref|XP_004145907.1|4.0e-9294.64PREDICTED: trafficking protein particle complex subunit 1 [Cucumis sativus][more]
gi|590673301|ref|XP_007038853.1|6.0e-8889.35SNARE-like superfamily protein isoform 1 [Theobroma cacao][more]
gi|823182604|ref|XP_012488565.1|3.3e-8686.98PREDICTED: trafficking protein particle complex subunit 1 [Gossypium raimondii][more]
gi|566210554|ref|XP_006372361.1|7.3e-8686.98synbindin family protein [Populus trichocarpa][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0030008TRAPP complex
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
Vocabulary: INTERPRO
TermDefinition
IPR011012Longin-like_dom_sf
IPR007233TRAPPC
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006888 ER to Golgi vesicle-mediated transport
biological_process GO:0010413 glucuronoxylan metabolic process
biological_process GO:0009832 plant-type cell wall biogenesis
biological_process GO:0045492 xylan biosynthetic process
biological_process GO:0006810 transport
biological_process GO:0016192 vesicle-mediated transport
cellular_component GO:0005801 cis-Golgi network
cellular_component GO:0005829 cytosol
cellular_component GO:0030008 TRAPP complex
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG05g06360.1Cp4.1LG05g06360.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007233Trafficking protein particle complex subunitPANTHERPTHR23249SYNBINDINcoord: 1..169
score: 8.1
IPR007233Trafficking protein particle complex subunitPFAMPF04099Sybindincoord: 23..167
score: 8.8
IPR007233Trafficking protein particle complex subunitSMARTSM01399Sybindin_2coord: 23..168
score: 1.9
IPR011012Longin-like domainunknownSSF64356SNARE-likecoord: 23..167
score: 1.1
NoneNo IPR availableGENE3DG3DSA:3.30.450.70coord: 23..167
score: 1.1
NoneNo IPR availablePANTHERPTHR23249:SF16TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 1coord: 1..169
score: 8.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG05g06360Cucsa.201730Cucumber (Gy14) v1cgycpeB0576
Cp4.1LG05g06360CmaCh15G010630Cucurbita maxima (Rimu)cmacpeB330
Cp4.1LG05g06360CmaCh02G010860Cucurbita maxima (Rimu)cmacpeB646
Cp4.1LG05g06360CmoCh02G011040Cucurbita moschata (Rifu)cmocpeB595
Cp4.1LG05g06360CmoCh15G011200Cucurbita moschata (Rifu)cmocpeB293
Cp4.1LG05g06360Cla004935Watermelon (97103) v1cpewmB708
Cp4.1LG05g06360Csa5G139910Cucumber (Chinese Long) v2cpecuB730
Cp4.1LG05g06360MELO3C005845Melon (DHL92) v3.5.1cpemeB651
Cp4.1LG05g06360ClCG01G000850Watermelon (Charleston Gray)cpewcgB635
Cp4.1LG05g06360CSPI05G03630Wild cucumber (PI 183967)cpecpiB733
Cp4.1LG05g06360Lsi09G000730Bottle gourd (USVL1VR-Ls)cpelsiB579
Cp4.1LG05g06360MELO3C005845.2Melon (DHL92) v3.6.1cpemedB779
Cp4.1LG05g06360CsaV3_5G000990Cucumber (Chinese Long) v3cpecucB0910
Cp4.1LG05g06360Bhi12G000675Wax gourdcpewgoB0913
Cp4.1LG05g06360CsGy5G000870Cucumber (Gy14) v2cgybcpeB686
Cp4.1LG05g06360Carg08394Silver-seed gourdcarcpeB1002
Cp4.1LG05g06360Carg27017Silver-seed gourdcarcpeB0821
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG05g06360Cp4.1LG13g02750Cucurbita pepo (Zucchini)cpecpeB227
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG05g06360Cucumber (Chinese Long) v3cpecucB0903
Cp4.1LG05g06360Wax gourdcpewgoB0928
Cp4.1LG05g06360Cucurbita pepo (Zucchini)cpecpeB057
Cp4.1LG05g06360Cucurbita pepo (Zucchini)cpecpeB245
Cp4.1LG05g06360Cucurbita pepo (Zucchini)cpecpeB479
Cp4.1LG05g06360Cucumber (Gy14) v1cgycpeB0244
Cp4.1LG05g06360Cucumber (Gy14) v1cgycpeB0685
Cp4.1LG05g06360Cucurbita maxima (Rimu)cmacpeB291
Cp4.1LG05g06360Cucurbita maxima (Rimu)cmacpeB358
Cp4.1LG05g06360Cucurbita maxima (Rimu)cmacpeB453
Cp4.1LG05g06360Cucurbita moschata (Rifu)cmocpeB322
Cp4.1LG05g06360Cucurbita moschata (Rifu)cmocpeB414
Cp4.1LG05g06360Wild cucumber (PI 183967)cpecpiB722
Cp4.1LG05g06360Wild cucumber (PI 183967)cpecpiB725
Cp4.1LG05g06360Cucumber (Chinese Long) v2cpecuB720
Cp4.1LG05g06360Cucumber (Chinese Long) v2cpecuB725
Cp4.1LG05g06360Bottle gourd (USVL1VR-Ls)cpelsiB618
Cp4.1LG05g06360Bottle gourd (USVL1VR-Ls)cpelsiB626
Cp4.1LG05g06360Watermelon (Charleston Gray)cpewcgB677
Cp4.1LG05g06360Watermelon (Charleston Gray)cpewcgB678
Cp4.1LG05g06360Watermelon (97103) v1cpewmB704
Cp4.1LG05g06360Watermelon (97103) v1cpewmB705
Cp4.1LG05g06360Melon (DHL92) v3.5.1cpemeB698
Cp4.1LG05g06360Melon (DHL92) v3.5.1cpemeB701
Cp4.1LG05g06360Cucumber (Gy14) v2cgybcpeB428
Cp4.1LG05g06360Melon (DHL92) v3.6.1cpemedB832
Cp4.1LG05g06360Melon (DHL92) v3.6.1cpemedB835
Cp4.1LG05g06360Silver-seed gourdcarcpeB1377