Cucsa.200180 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.200180
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Protein of unknown function (DUF565)
Location	scaffold01365 : 629620 .. 630497 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTATAGCTTTCTCAAGCTTCCTCTTCATCAAACGTACAGCTACCTTTTCCTCTTCATCAATTTCCAAATTCATGATTTTCTTTGCTCCATCAACAGGAAGCTCTTCTCTTTCTCCTCACTCCCAAAGCGGAACTTGGGAACAGAAAGGTATTCCCTTAATTTTCTCCCATTTTCCTATCATTTCTGTTATGGGTTTCTCAAATTTTCAATCCTAAGATGAATTTTGTTAAGATTTAAACCTTTTTGTTATCTTTGTTTGGCAGGATTTTTGTTTTCTATAGTAAATTTCAGCTGTAGTTTAGTGGAAAGGTGGATATTGTTTTTGGAAATTGAATCTATGTATTTGCTACTTATTGTTATCATTGTTCATTATCAAATTAGAACTCCAATCCTCTGTTTTTGCCTTCAAAACCCCTTTCAGATTCCAGGCATTCCTTGATTTATACTGATTTTATGCCTCATTTAATGATAATTAGCCTTATGGGTACTCTTGGGTTATTTTAACAACATTGCCAAATTTTAGCCTTTGTGTTCTATGTATTAGTGACACATCAGTTTAAGCAAAATACTCTTTAATGATCTCAGGTTCTCAACATTTTTTTATACAGCTGTCTAGGAAGTGAAACCTTCAATGGCACAATATGCTAGTTTAGTCCATACTAGCCTCTTAAATTATGGCTTTACTCACAAAATGAATCCTTCATATTGGAGATATGATATGGTTAAATCACGACCTTCCCCTCAACGTAGCTTTCGTGTCAAAGTTGTGCAAGATACCGAAGGTCCTAGTAGGATAGTTGATATCATTAGACTCGTGCCTGAGCTCTCAAGAAATTACTTTAGAAGTCCTTCGAGGAGAGCCCTTTTTGGATGA

mRNA sequence

ATGGCTATAGCTTTCTCAAGCTTCCTCTTCATCAAACGTACAGCTACCTTTTCCTCTTCATCAATTTCCAAATTCATGATTTTCTTTGCTCCATCAACAGGAAGCTCTTCTCTTTCTCCTCACTCCCAAAGCGGAACTTGGGAACAGAAAGGATTTTTGTTTTCTATAGTAAATTTCAGCTGTAGTTTAGTGGAAAGGTGGATATTGTTTTTGGAAATTGAATCTATGTATTTGCTACTTATTGTTATCATTGAAGTGAAACCTTCAATGGCACAATATGCTAGTTTAGTCCATACTAGCCTCTTAAATTATGGCTTTACTCACAAAATGAATCCTTCATATTGGAGATATGATATGGTTAAATCACGACCTTCCCCTCAACGTAGCTTTCGTGTCAAAGTTGTGCAAGATACCGAAGGTCCTAGTAGGATAGTTGATATCATTAGACTCGTGCCTGAGCTCTCAAGAAATTACTTTAGAAGTCCTTCGAGGAGAGCCCTTTTTGGATGA

Coding sequence (CDS)

ATGGCTATAGCTTTCTCAAGCTTCCTCTTCATCAAACGTACAGCTACCTTTTCCTCTTCATCAATTTCCAAATTCATGATTTTCTTTGCTCCATCAACAGGAAGCTCTTCTCTTTCTCCTCACTCCCAAAGCGGAACTTGGGAACAGAAAGGATTTTTGTTTTCTATAGTAAATTTCAGCTGTAGTTTAGTGGAAAGGTGGATATTGTTTTTGGAAATTGAATCTATGTATTTGCTACTTATTGTTATCATTGAAGTGAAACCTTCAATGGCACAATATGCTAGTTTAGTCCATACTAGCCTCTTAAATTATGGCTTTACTCACAAAATGAATCCTTCATATTGGAGATATGATATGGTTAAATCACGACCTTCCCCTCAACGTAGCTTTCGTGTCAAAGTTGTGCAAGATACCGAAGGTCCTAGTAGGATAGTTGATATCATTAGACTCGTGCCTGAGCTCTCAAGAAATTACTTTAGAAGTCCTTCGAGGAGAGCCCTTTTTGGATGA

Protein sequence

MAIAFSSFLFIKRTATFSSSSISKFMIFFAPSTGSSSLSPHSQSGTWEQKGFLFSIVNFSCSLVERWILFLEIESMYLLLIVIIEVKPSMAQYASLVHTSLLNYGFTHKMNPSYWRYDMVKSRPSPQRSFRVKVVQDTEGPSRIVDIIRLVPELSRNYFRSPSRRALFG*

Homology

[Close]

BLAST of Cucsa.200180 vs. TrEMBL
Match: A0A0A0KPS1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G172820 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 5.0e-33
Identity = 73/80 (91.25%), Postives = 74/80 (92.50%), Query Frame = 1


Query: 90  MAQYASLVHTSLLNYGFTHKMNPSYWRYDMVKSRPSPQRSFRVKVVQDTEGPSRIVDIIR 149
           MAQ ASLVHTSLLNYGFT KMNPSYWRYDMVKSRPSP RSFRVK VQDT GP R+VDIIR
Sbjct: 1   MAQSASLVHTSLLNYGFTPKMNPSYWRYDMVKSRPSPPRSFRVKAVQDTGGPRRLVDIIR 60

Query: 150 LVPELSRNYFRSPSRRALFG 170
           LVPELSRNYFRSPSRRALFG
Sbjct: 61  LVPELSRNYFRSPSRRALFG 80

[Close]

BLAST of Cucsa.200180 vs. TrEMBL
Match: A0A0A0LV86_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G144320 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 6.6e-33
Identity = 71/72 (98.61%), Postives = 72/72 (100.00%), Query Frame = 1


Query: 90  MAQYASLVHTSLLNYGFTHKMNPSYWRYDMVKSRPSPQRSFRVKVVQDTEGPSRIVDIIR 149
           MAQYASLVHTSLLNYGFTHKMNPSYWRYDMVKSRPSPQRSFRVKVVQDTEGPSRIVDIIR
Sbjct: 1   MAQYASLVHTSLLNYGFTHKMNPSYWRYDMVKSRPSPQRSFRVKVVQDTEGPSRIVDIIR 60

Query: 150 LVPELSRNYFRS 162
           LVPELSRNYFR+
Sbjct: 61  LVPELSRNYFRT 72

[Close]

BLAST of Cucsa.200180 vs. TrEMBL
Match: D7TMY2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0100g00310 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 2.6e-13
Identity = 45/80 (56.25%), Postives = 55/80 (68.75%), Query Frame = 1


Query: 90  MAQYASLVHTSLLNYGFTHKMNPSYWRYDMVKSRPSPQRSFRVKVVQDTEGPSRIVDIIR 149
           MA   SL  T LL +G       S+ +  M+ SR SP R F V+ VQ+ EGP R+VDIIR
Sbjct: 1   MAHSLSLPSTCLLKFGLATGTRVSHGKCSMLASRSSP-RFFSVQAVQENEGPRRLVDIIR 60

Query: 150 LVPELSRNYFRSPSRRALFG 170
           +VP+LSRNYF+SPSRRALFG
Sbjct: 61  IVPQLSRNYFQSPSRRALFG 79

[Close]

BLAST of Cucsa.200180 vs. TrEMBL
Match: M5VMT7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009996mg PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.7e-12
Identity = 45/80 (56.25%), Postives = 54/80 (67.50%), Query Frame = 1


Query: 90  MAQYASLVHTSLLNYGFTHKMNPSYWRYDMVKSRPSPQRSFRVKVVQDTEGPSRIVDIIR 149
           MA   SLV T L  +G + +   S+ +Y +   RPSP    RV+ VQ+T G  R+VDIIR
Sbjct: 1   MAHSLSLVSTGLHKFGLSPQNRVSHGKYGVFTLRPSPG-FLRVRAVQETGGSRRLVDIIR 60

Query: 150 LVPELSRNYFRSPSRRALFG 170
            VPELSRNYFRSPSRRALFG
Sbjct: 61  NVPELSRNYFRSPSRRALFG 79

[Close]

BLAST of Cucsa.200180 vs. TrEMBL
Match: A0A067JQQ7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26166 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.4e-11
Identity = 40/80 (50.00%), Postives = 52/80 (65.00%), Query Frame = 1


Query: 90  MAQYASLVHTSLLNYGFTHKMNPSYWRYDMVKSRPSPQRSFRVKVVQDTEGPSRIVDIIR 149
           MAQ  SL+HT  L  G +     S  +Y     + S +R F ++ VQ+  GP R+VD+IR
Sbjct: 1   MAQIVSLIHTGPLKLGPSPHRRISNGKYGTTVPK-SARRQFSIQAVQEDRGPRRLVDLIR 60

Query: 150 LVPELSRNYFRSPSRRALFG 170
           ++PE SRNYFRSPSRRALFG
Sbjct: 61  IIPEFSRNYFRSPSRRALFG 79

[Close]

BLAST of Cucsa.200180 vs. TAIR10
Match: AT5G43050.1 (AT5G43050.1 Protein of unknown function (DUF565))

HSP 1 Score: 60.8 bits (146), Expect = 9.1e-10
Identity = 32/82 (39.02%), Postives = 49/82 (59.76%), Query Frame = 1


Query: 90  MAQYASLVHTSLLNYGFTHKMNPSYWRYDMVKSRPSPQRSFRVKVVQDTEGPS--RIVDI 149
           MA   S + T+L +    H    S+  +     +   + +  ++ +Q+TEGP+  R++DI
Sbjct: 1   MAHSLSFISTNLNSLVLNHHQCQSFGTFVSSPFKRKRRFARSIRALQETEGPTPRRLIDI 60

Query: 150 IRLVPELSRNYFRSPSRRALFG 170
           IR VPE+SRNYF+ PSRR LFG
Sbjct: 61  IRSVPEISRNYFKKPSRRTLFG 82

[Close]

BLAST of Cucsa.200180 vs. NCBI nr
Match: gi|449451787|ref|XP_004143642.1| (PREDICTED: uncharacterized protein ycf20 [Cucumis sativus])

HSP 1 Score: 149.1 bits (375), Expect = 7.2e-33
Identity = 73/80 (91.25%), Postives = 74/80 (92.50%), Query Frame = 1


Query: 90  MAQYASLVHTSLLNYGFTHKMNPSYWRYDMVKSRPSPQRSFRVKVVQDTEGPSRIVDIIR 149
           MAQ ASLVHTSLLNYGFT KMNPSYWRYDMVKSRPSP RSFRVK VQDT GP R+VDIIR
Sbjct: 1   MAQSASLVHTSLLNYGFTPKMNPSYWRYDMVKSRPSPPRSFRVKAVQDTGGPRRLVDIIR 60

Query: 150 LVPELSRNYFRSPSRRALFG 170
           LVPELSRNYFRSPSRRALFG
Sbjct: 61  LVPELSRNYFRSPSRRALFG 80

[Close]

BLAST of Cucsa.200180 vs. NCBI nr
Match: gi|700209783|gb|KGN64879.1| (hypothetical protein Csa_1G144320 [Cucumis sativus])

HSP 1 Score: 148.7 bits (374), Expect = 9.4e-33
Identity = 71/72 (98.61%), Postives = 72/72 (100.00%), Query Frame = 1


Query: 90  MAQYASLVHTSLLNYGFTHKMNPSYWRYDMVKSRPSPQRSFRVKVVQDTEGPSRIVDIIR 149
           MAQYASLVHTSLLNYGFTHKMNPSYWRYDMVKSRPSPQRSFRVKVVQDTEGPSRIVDIIR
Sbjct: 1   MAQYASLVHTSLLNYGFTHKMNPSYWRYDMVKSRPSPQRSFRVKVVQDTEGPSRIVDIIR 60

Query: 150 LVPELSRNYFRS 162
           LVPELSRNYFR+
Sbjct: 61  LVPELSRNYFRT 72

[Close]

BLAST of Cucsa.200180 vs. NCBI nr
Match: gi|659073084|ref|XP_008467245.1| (PREDICTED: uncharacterized protein ycf20 isoform X1 [Cucumis melo])

HSP 1 Score: 141.0 bits (354), Expect = 2.0e-30
Identity = 69/80 (86.25%), Postives = 71/80 (88.75%), Query Frame = 1


Query: 90  MAQYASLVHTSLLNYGFTHKMNPSYWRYDMVKSRPSPQRSFRVKVVQDTEGPSRIVDIIR 149
           MAQ  SLVHT LLNYGF+ KMN SYWRYDMVKSRPSP RSFRVK VQDT GP R+VDIIR
Sbjct: 1   MAQSTSLVHTGLLNYGFSLKMNSSYWRYDMVKSRPSPPRSFRVKAVQDTGGPRRLVDIIR 60

Query: 150 LVPELSRNYFRSPSRRALFG 170
           LVPELSRNYFRSPSRRALFG
Sbjct: 61  LVPELSRNYFRSPSRRALFG 80

[Close]

BLAST of Cucsa.200180 vs. NCBI nr
Match: gi|659073086|ref|XP_008467247.1| (PREDICTED: uncharacterized protein LOC103504644 isoform X2 [Cucumis melo])

HSP 1 Score: 141.0 bits (354), Expect = 2.0e-30
Identity = 69/80 (86.25%), Postives = 71/80 (88.75%), Query Frame = 1


Query: 90  MAQYASLVHTSLLNYGFTHKMNPSYWRYDMVKSRPSPQRSFRVKVVQDTEGPSRIVDIIR 149
           MAQ  SLVHT LLNYGF+ KMN SYWRYDMVKSRPSP RSFRVK VQDT GP R+VDIIR
Sbjct: 1   MAQSTSLVHTGLLNYGFSLKMNSSYWRYDMVKSRPSPPRSFRVKAVQDTGGPRRLVDIIR 60

Query: 150 LVPELSRNYFRSPSRRALFG 170
           LVPELSRNYFRSPSRRALFG
Sbjct: 61  LVPELSRNYFRSPSRRALFG 80

[Close]

BLAST of Cucsa.200180 vs. NCBI nr
Match: gi|659073088|ref|XP_008467248.1| (PREDICTED: uncharacterized protein LOC103504644 isoform X3 [Cucumis melo])

HSP 1 Score: 141.0 bits (354), Expect = 2.0e-30
Identity = 69/80 (86.25%), Postives = 71/80 (88.75%), Query Frame = 1


Query: 90  MAQYASLVHTSLLNYGFTHKMNPSYWRYDMVKSRPSPQRSFRVKVVQDTEGPSRIVDIIR 149
           MAQ  SLVHT LLNYGF+ KMN SYWRYDMVKSRPSP RSFRVK VQDT GP R+VDIIR
Sbjct: 1   MAQSTSLVHTGLLNYGFSLKMNSSYWRYDMVKSRPSPPRSFRVKAVQDTGGPRRLVDIIR 60

Query: 150 LVPELSRNYFRSPSRRALFG 170
           LVPELSRNYFRSPSRRALFG
Sbjct: 61  LVPELSRNYFRSPSRRALFG 80

The following BLAST results are available for this feature:

BLAST of Cucsa.200180 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KPS1_CUCSA	5.0e-33	91.25	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G172820 PE=4 SV=1	[more]
A0A0A0LV86_CUCSA	6.6e-33	98.61	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G144320 PE=4 SV=1	[more]
D7TMY2_VITVI	2.6e-13	56.25	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0100g00310 PE=4 SV=...	[more]
M5VMT7_PRUPE	1.7e-12	56.25	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009996mg PE=4 SV=1	[more]
A0A067JQQ7_JATCU	1.4e-11	50.00	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26166 PE=4 SV=1	[more]

BLAST of Cucsa.200180 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G43050.1	9.1e-10	39.02	Protein of unknown function (DUF565)	[more]

BLAST of Cucsa.200180 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449451787\|ref\|XP_004143642.1\|	7.2e-33	91.25	PREDICTED: uncharacterized protein ycf20 [Cucumis sativus]	[more]
gi\|700209783\|gb\|KGN64879.1\|	9.4e-33	98.61	hypothetical protein Csa_1G144320 [Cucumis sativus]	[more]
gi\|659073084\|ref\|XP_008467245.1\|	2.0e-30	86.25	PREDICTED: uncharacterized protein ycf20 isoform X1 [Cucumis melo]	[more]
gi\|659073086\|ref\|XP_008467247.1\|	2.0e-30	86.25	PREDICTED: uncharacterized protein LOC103504644 isoform X2 [Cucumis melo]	[more]
gi\|659073088\|ref\|XP_008467248.1\|	2.0e-30	86.25	PREDICTED: uncharacterized protein LOC103504644 isoform X3 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.200180.1	Cucsa.200180.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33787	FAMILY NOT NAMED	coord: 24..169 score: 6.7
None	No IPR available	PANTHER	PTHR33787:SF2	SUBFAMILY NOT NAMED	coord: 24..169 score: 6.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.200180	Csa1G144320	Cucumber (Chinese Long) v2	cgycuB305
Cucsa.200180	CSPI01G14180	Wild cucumber (PI 183967)	cgycpiB318

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.200180	Melon (DHL92) v3.6.1	cgymedB361
Cucsa.200180	Silver-seed gourd	carcgyB0205
Cucsa.200180	Cucumber (Chinese Long) v3	cgycucB322
Cucsa.200180	Wax gourd	cgywgoB422
Cucsa.200180	Cucurbita maxima (Rimu)	cgycmaB0593
Cucsa.200180	Cucurbita maxima (Rimu)	cgycmaB0594
Cucsa.200180	Cucurbita moschata (Rifu)	cgycmoB0593
Cucsa.200180	Cucurbita moschata (Rifu)	cgycmoB0594
Cucsa.200180	Melon (DHL92) v3.5.1	cgymeB365
Cucsa.200180	Watermelon (Charleston Gray)	cgywcgB370
Cucsa.200180	Watermelon (97103) v1	cgywmB391
Cucsa.200180	Cucurbita pepo (Zucchini)	cgycpeB0565
Cucsa.200180	Cucurbita pepo (Zucchini)	cgycpeB0566
Cucsa.200180	Bottle gourd (USVL1VR-Ls)	cgylsiB343