CSPI01G14180 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI01G14180
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionProtein of unknown function (DUF565)
LocationChr1 : 9772600 .. 9773177 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AGCCTTTGTGTTCTATGTATTAGTGACTCATCAGTTTAAGCAAAATACTCTTTAATGATCTCAGGTTCTCAACATTTTTTTATACAGCCGTCTAGGAAGTGAAACCTTCAATGGCACAATATGCTAGTTTAGTCCATACTAGCCTCTTAAATTATGGCTTTACTCACAAAATGAATCCTTCATATTGGAGATATGATATGGTTAAATCACGACCTTCCCCTCAACGTAGCTTTCGTGTCAAAGTTGTGCAAGATACCGAAGGTCCTAGTAGGATAGTTGATATCATTAGACTCGTGCCTGAGCTCTCAAGAAATTACTTTAGAAGTCCTTCGAGGAGGGCCCTTTTTGGATGAATCTCATTGTTGGGTGGCTTTTATGTGGCACAAAATATCTCATTGTCATTTGGAGCTTTTGGAGTAAATGATGTTTTTGCTACTGTGGTATGCATTCTCCTCACCGATGTTACTCGATTTTATTACAATCGACCAAAGGTAACTTTCCCCATTGCTCTACTGAACAACTTCAAAATGGGTTTCACTTGTGGTCTTTTCATTGATGCTTTCAAACTTGCTAGTTAA

mRNA sequence

ATGGCACAATATGCTAGTTTAGTCCATACTAGCCTCTTAAATTATGGCTTTACTCACAAAATGAATCCTTCATATTGGAGATATGATATGGTTAAATCACGACCTTCCCCTCAACGTAGCTTTCGTGTCAAAGTTGTGCAAGATACCGAAGGTCCTAGTAGGATAGTTGATATCATTAGACTCGTGCCTGAGCTCTCAAGAAATTACTTTAGAACTTTTGGAGTAAATGATGTTTTTGCTACTGTGGTATGCATTCTCCTCACCGATGTTACTCGATTTTATTACAATCGACCAAAGGTAACTTTCCCCATTGCTCTACTGAACAACTTCAAAATGGGTTTCACTTGTGGTCTTTTCATTGATGCTTTCAAACTTGCTAGTTAA

Coding sequence (CDS)

ATGGCACAATATGCTAGTTTAGTCCATACTAGCCTCTTAAATTATGGCTTTACTCACAAAATGAATCCTTCATATTGGAGATATGATATGGTTAAATCACGACCTTCCCCTCAACGTAGCTTTCGTGTCAAAGTTGTGCAAGATACCGAAGGTCCTAGTAGGATAGTTGATATCATTAGACTCGTGCCTGAGCTCTCAAGAAATTACTTTAGAACTTTTGGAGTAAATGATGTTTTTGCTACTGTGGTATGCATTCTCCTCACCGATGTTACTCGATTTTATTACAATCGACCAAAGGTAACTTTCCCCATTGCTCTACTGAACAACTTCAAAATGGGTTTCACTTGTGGTCTTTTCATTGATGCTTTCAAACTTGCTAGTTAA
Homology
[Close]
BLAST of CSPI01G14180 vs. TrEMBL
Match: A0A0A0LV86_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G144320 PE=4 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 4.4e-66
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 1 

Query: 1   MAQYASLVHTSLLNYGFTHKMNPSYWRYDMVKSRPSPQRSFRVKVVQDTEGPSRIVDIIR 60
           MAQYASLVHTSLLNYGFTHKMNPSYWRYDMVKSRPSPQRSFRVKVVQDTEGPSRIVDIIR
Sbjct: 1   MAQYASLVHTSLLNYGFTHKMNPSYWRYDMVKSRPSPQRSFRVKVVQDTEGPSRIVDIIR 60

Query: 61  LVPELSRNYFRTFGVNDVFATVVCILLTDVTRFYYNRPKVTFPIALLNNFKMGFTCGLFI 120
           LVPELSRNYFRTFGVNDVFATVVCILLTDVTRFYYNRPKVTFPIALLNNFKMGFTCGLFI
Sbjct: 61  LVPELSRNYFRTFGVNDVFATVVCILLTDVTRFYYNRPKVTFPIALLNNFKMGFTCGLFI 120

Query: 121 DAFKL 126
           DAFKL
Sbjct: 121 DAFKL 125

[Close]
BLAST of CSPI01G14180 vs. TrEMBL
Match: A0A0A0KPS1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G172820 PE=4 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 3.1e-51
Identity = 112/156 (71.79%), Postives = 117/156 (75.00%), Query Frame = 1 

Query: 1   MAQYASLVHTSLLNYGFTHKMNPSYWRYDMVKSRPSPQRSFRVKVVQDTEGPSRIVDIIR 60
           MAQ ASLVHTSLLNYGFT KMNPSYWRYDMVKSRPSP RSFRVK VQDT GP R+VDIIR
Sbjct: 1   MAQSASLVHTSLLNYGFTPKMNPSYWRYDMVKSRPSPPRSFRVKAVQDTGGPRRLVDIIR 60

Query: 61  LVPELSRNYFRT----------------------------FGVNDVFATVVCILLTD-VT 120
           LVPELSRNYFR+                             GVNDV A VVC+LLT+ VT
Sbjct: 61  LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT 120

Query: 121 RFYYNRPKVTFPIALLNNFKMGFTCGLFIDAFKLAS 128
           RFYY+RPKVTFPIALLNNFKMGFT GLFIDAFKLAS
Sbjct: 121 RFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS 156

[Close]
BLAST of CSPI01G14180 vs. TrEMBL
Match: D7TMY2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0100g00310 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 1.0e-30
Identity = 81/156 (51.92%), Postives = 98/156 (62.82%), Query Frame = 1 

Query: 1   MAQYASLVHTSLLNYGFTHKMNPSYWRYDMVKSRPSPQRSFRVKVVQDTEGPSRIVDIIR 60
           MA   SL  T LL +G       S+ +  M+ SR SP R F V+ VQ+ EGP R+VDIIR
Sbjct: 1   MAHSLSLPSTCLLKFGLATGTRVSHGKCSMLASRSSP-RFFSVQAVQENEGPRRLVDIIR 60

Query: 61  LVPELSRNYFRT----------------------------FGVNDVFATVVCILLTD-VT 120
           +VP+LSRNYF++                             GVNDV A V+C+L+T+ VT
Sbjct: 61  IVPQLSRNYFQSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVLCVLITEYVT 120

Query: 121 RFYYNRPKVTFPIALLNNFKMGFTCGLFIDAFKLAS 128
           RFYY+RPKVTFP+ALLNNFKMGFT GLFIDAFKLAS
Sbjct: 121 RFYYSRPKVTFPLALLNNFKMGFTYGLFIDAFKLAS 155

[Close]
BLAST of CSPI01G14180 vs. TrEMBL
Match: A0A067JQQ7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26166 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 1.9e-29
Identity = 77/156 (49.36%), Postives = 95/156 (60.90%), Query Frame = 1 

Query: 1   MAQYASLVHTSLLNYGFTHKMNPSYWRYDMVKSRPSPQRSFRVKVVQDTEGPSRIVDIIR 60
           MAQ  SL+HT  L  G +     S  +Y     + S +R F ++ VQ+  GP R+VD+IR
Sbjct: 1   MAQIVSLIHTGPLKLGPSPHRRISNGKYGTTVPK-SARRQFSIQAVQEDRGPRRLVDLIR 60

Query: 61  LVPELSRNYFRT----------------------------FGVNDVFATVVCILLTD-VT 120
           ++PE SRNYFR+                             GVNDV A V+C+LLT+ VT
Sbjct: 61  IIPEFSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVICVLLTEYVT 120

Query: 121 RFYYNRPKVTFPIALLNNFKMGFTCGLFIDAFKLAS 128
           RFYY+RPKVTFP+ALLNNFKMGFT GLFIDAFKLAS
Sbjct: 121 RFYYSRPKVTFPLALLNNFKMGFTYGLFIDAFKLAS 155

[Close]
BLAST of CSPI01G14180 vs. TrEMBL
Match: B9R9H7_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1497610 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 2.1e-28
Identity = 79/156 (50.64%), Postives = 93/156 (59.62%), Query Frame = 1 

Query: 1   MAQYASLVHTSLLNYGFTHKMNPSYWRYDMVKSRPSPQRSFRVKVVQDTEGPSRIVDIIR 60
           MA    L+ T  L  GF  +   S  +Y M+ SR S +    ++ VQD  GP R+VDIIR
Sbjct: 1   MALSIGLIQTVPLKLGFGFQRRVSCGKYGMLISRSS-RGLLSIQAVQDNGGPQRLVDIIR 60

Query: 61  LVPELSRNYFRT----------------------------FGVNDVFATVVCILLTD-VT 120
            VPE SRNYFR+                             GVNDV A V+C+LLT+ VT
Sbjct: 61  RVPEFSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVICVLLTEYVT 120

Query: 121 RFYYNRPKVTFPIALLNNFKMGFTCGLFIDAFKLAS 128
           RFYY+RPKVTFP+ALLNNFKMGFT GLFIDAFKLAS
Sbjct: 121 RFYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS 155

[Close]
BLAST of CSPI01G14180 vs. TAIR10
Match: AT5G43050.1 (AT5G43050.1 Protein of unknown function (DUF565))

HSP 1 Score: 117.1 bits (292), Expect = 8.1e-27
Identity = 70/158 (44.30%), Postives = 91/158 (57.59%), Query Frame = 1 

Query: 1   MAQYASLVHTSLLNYGFTHKMNPSYWRYDMVKSRPSPQRSFRVKVVQDTEGPS--RIVDI 60
           MA   S + T+L +    H    S+  +     +   + +  ++ +Q+TEGP+  R++DI
Sbjct: 1   MAHSLSFISTNLNSLVLNHHQCQSFGTFVSSPFKRKRRFARSIRALQETEGPTPRRLIDI 60

Query: 61  IRLVPELSRNYFR----------------------------TFGVNDVFATVVCILLTD- 120
           IR VPE+SRNYF+                              GVNDV A V+C+LLT+ 
Sbjct: 61  IRSVPEISRNYFKKPSRRTLFGGISLLGGFYVAQTISLSFGALGVNDVIAAVLCVLLTEY 120

Query: 121 VTRFYYNRPKVTFPIALLNNFKMGFTCGLFIDAFKLAS 128
           VTRFYY+R  VTFPIALLNNFKMGFT GLFIDAFKLAS
Sbjct: 121 VTRFYYSRTTVTFPIALLNNFKMGFTYGLFIDAFKLAS 158

[Close]
BLAST of CSPI01G14180 vs. NCBI nr
Match: gi|700209783|gb|KGN64879.1| (hypothetical protein Csa_1G144320 [Cucumis sativus])

HSP 1 Score: 258.5 bits (659), Expect = 6.3e-66
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 1 

Query: 1   MAQYASLVHTSLLNYGFTHKMNPSYWRYDMVKSRPSPQRSFRVKVVQDTEGPSRIVDIIR 60
           MAQYASLVHTSLLNYGFTHKMNPSYWRYDMVKSRPSPQRSFRVKVVQDTEGPSRIVDIIR
Sbjct: 1   MAQYASLVHTSLLNYGFTHKMNPSYWRYDMVKSRPSPQRSFRVKVVQDTEGPSRIVDIIR 60

Query: 61  LVPELSRNYFRTFGVNDVFATVVCILLTDVTRFYYNRPKVTFPIALLNNFKMGFTCGLFI 120
           LVPELSRNYFRTFGVNDVFATVVCILLTDVTRFYYNRPKVTFPIALLNNFKMGFTCGLFI
Sbjct: 61  LVPELSRNYFRTFGVNDVFATVVCILLTDVTRFYYNRPKVTFPIALLNNFKMGFTCGLFI 120

Query: 121 DAFKL 126
           DAFKL
Sbjct: 121 DAFKL 125

[Close]
BLAST of CSPI01G14180 vs. NCBI nr
Match: gi|449451787|ref|XP_004143642.1| (PREDICTED: uncharacterized protein ycf20 [Cucumis sativus])

HSP 1 Score: 209.1 bits (531), Expect = 4.4e-51
Identity = 112/156 (71.79%), Postives = 117/156 (75.00%), Query Frame = 1 

Query: 1   MAQYASLVHTSLLNYGFTHKMNPSYWRYDMVKSRPSPQRSFRVKVVQDTEGPSRIVDIIR 60
           MAQ ASLVHTSLLNYGFT KMNPSYWRYDMVKSRPSP RSFRVK VQDT GP R+VDIIR
Sbjct: 1   MAQSASLVHTSLLNYGFTPKMNPSYWRYDMVKSRPSPPRSFRVKAVQDTGGPRRLVDIIR 60

Query: 61  LVPELSRNYFRT----------------------------FGVNDVFATVVCILLTD-VT 120
           LVPELSRNYFR+                             GVNDV A VVC+LLT+ VT
Sbjct: 61  LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT 120

Query: 121 RFYYNRPKVTFPIALLNNFKMGFTCGLFIDAFKLAS 128
           RFYY+RPKVTFPIALLNNFKMGFT GLFIDAFKLAS
Sbjct: 121 RFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS 156

[Close]
BLAST of CSPI01G14180 vs. NCBI nr
Match: gi|659073084|ref|XP_008467245.1| (PREDICTED: uncharacterized protein ycf20 isoform X1 [Cucumis melo])

HSP 1 Score: 201.1 bits (510), Expect = 1.2e-48
Identity = 108/156 (69.23%), Postives = 114/156 (73.08%), Query Frame = 1 

Query: 1   MAQYASLVHTSLLNYGFTHKMNPSYWRYDMVKSRPSPQRSFRVKVVQDTEGPSRIVDIIR 60
           MAQ  SLVHT LLNYGF+ KMN SYWRYDMVKSRPSP RSFRVK VQDT GP R+VDIIR
Sbjct: 1   MAQSTSLVHTGLLNYGFSLKMNSSYWRYDMVKSRPSPPRSFRVKAVQDTGGPRRLVDIIR 60

Query: 61  LVPELSRNYFRT----------------------------FGVNDVFATVVCILLTD-VT 120
           LVPELSRNYFR+                             GVNDV A VVC+LLT+ VT
Sbjct: 61  LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT 120

Query: 121 RFYYNRPKVTFPIALLNNFKMGFTCGLFIDAFKLAS 128
           RFYY+RPKVTFPIALLNNFKMGFT GLFIDAFKLAS
Sbjct: 121 RFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS 156

[Close]
BLAST of CSPI01G14180 vs. NCBI nr
Match: gi|659073086|ref|XP_008467247.1| (PREDICTED: uncharacterized protein LOC103504644 isoform X2 [Cucumis melo])

HSP 1 Score: 149.4 bits (376), Expect = 4.2e-33
Identity = 81/128 (63.28%), Postives = 87/128 (67.97%), Query Frame = 1 

Query: 1   MAQYASLVHTSLLNYGFTHKMNPSYWRYDMVKSRPSPQRSFRVKVVQDTEGPSRIVDIIR 60
           MAQ  SLVHT LLNYGF+ KMN SYWRYDMVKSRPSP RSFRVK VQDT GP R+VDIIR
Sbjct: 1   MAQSTSLVHTGLLNYGFSLKMNSSYWRYDMVKSRPSPPRSFRVKAVQDTGGPRRLVDIIR 60

Query: 61  LVPELSRNYFRT----------------------------FGVNDVFATVVCILLTD-VT 100
           LVPELSRNYFR+                             GVNDV A VVC+LLT+ VT
Sbjct: 61  LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT 120

[Close]
BLAST of CSPI01G14180 vs. NCBI nr
Match: gi|659073088|ref|XP_008467248.1| (PREDICTED: uncharacterized protein LOC103504644 isoform X3 [Cucumis melo])

HSP 1 Score: 149.4 bits (376), Expect = 4.2e-33
Identity = 81/128 (63.28%), Postives = 87/128 (67.97%), Query Frame = 1 

Query: 1   MAQYASLVHTSLLNYGFTHKMNPSYWRYDMVKSRPSPQRSFRVKVVQDTEGPSRIVDIIR 60
           MAQ  SLVHT LLNYGF+ KMN SYWRYDMVKSRPSP RSFRVK VQDT GP R+VDIIR
Sbjct: 1   MAQSTSLVHTGLLNYGFSLKMNSSYWRYDMVKSRPSPPRSFRVKAVQDTGGPRRLVDIIR 60

Query: 61  LVPELSRNYFRT----------------------------FGVNDVFATVVCILLTD-VT 100
           LVPELSRNYFR+                             GVNDV A VVC+LLT+ VT
Sbjct: 61  LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT 120

The following BLAST results are available for this feature:
BLAST of CSPI01G14180 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI01G14180 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LV86_CUCSA4.4e-66100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G144320 PE=4 SV=1[more]
A0A0A0KPS1_CUCSA3.1e-5171.79Uncharacterized protein OS=Cucumis sativus GN=Csa_5G172820 PE=4 SV=1[more]
D7TMY2_VITVI1.0e-3051.92Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0100g00310 PE=4 SV=... [more]
A0A067JQQ7_JATCU1.9e-2949.36Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26166 PE=4 SV=1[more]
B9R9H7_RICCO2.1e-2850.64Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1497610 PE=4 SV=1[more]
BLAST of CSPI01G14180 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G43050.18.1e-2744.30 Protein of unknown function (DUF565)[more]
BLAST of CSPI01G14180 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209783|gb|KGN64879.1|6.3e-66100.00hypothetical protein Csa_1G144320 [Cucumis sativus][more]
gi|449451787|ref|XP_004143642.1|4.4e-5171.79PREDICTED: uncharacterized protein ycf20 [Cucumis sativus][more]
gi|659073084|ref|XP_008467245.1|1.2e-4869.23PREDICTED: uncharacterized protein ycf20 isoform X1 [Cucumis melo][more]
gi|659073086|ref|XP_008467247.1|4.2e-3363.28PREDICTED: uncharacterized protein LOC103504644 isoform X2 [Cucumis melo][more]
gi|659073088|ref|XP_008467248.1|4.2e-3363.28PREDICTED: uncharacterized protein LOC103504644 isoform X3 [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007572Uncharacterised_Ycf20
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G14180.1CSPI01G14180.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007572Uncharacterised protein family Ycf20PFAMPF04483DUF565coord: 74..127
score: 1.2
NoneNo IPR availablePANTHERPTHR33787FAMILY NOT NAMEDcoord: 6..127
score: 1.9
NoneNo IPR availablePANTHERPTHR33787:SF2SUBFAMILY NOT NAMEDcoord: 6..127
score: 1.9

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI01G14180Csa1G144320Cucumber (Chinese Long) v2cpicuB000
CSPI01G14180Cucsa.200180Cucumber (Gy14) v1cgycpiB318
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI01G14180Cucurbita pepo (Zucchini)cpecpiB518
CSPI01G14180Cucurbita pepo (Zucchini)cpecpiB809
CSPI01G14180Bottle gourd (USVL1VR-Ls)cpilsiB006
CSPI01G14180Bottle gourd (USVL1VR-Ls)cpilsiB046
CSPI01G14180Melon (DHL92) v3.6.1cpimedB011
CSPI01G14180Cucumber (Gy14) v2cgybcpiB001
CSPI01G14180Silver-seed gourdcarcpiB0192
CSPI01G14180Cucumber (Chinese Long) v3cpicucB001
CSPI01G14180Watermelon (97103) v2cpiwmbB002
CSPI01G14180Watermelon (97103) v2cpiwmbB026
CSPI01G14180Wax gourdcpiwgoB049
CSPI01G14180Cucurbita maxima (Rimu)cmacpiB163
CSPI01G14180Cucurbita maxima (Rimu)cmacpiB205
CSPI01G14180Cucurbita moschata (Rifu)cmocpiB148
CSPI01G14180Cucurbita moschata (Rifu)cmocpiB192
CSPI01G14180Melon (DHL92) v3.5.1cpimeB011
CSPI01G14180Watermelon (Charleston Gray)cpiwcgB027
CSPI01G14180Watermelon (97103) v1cpiwmB070