Csa1G144320 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa1G144320
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	OJ991113_30.19 protein; contains IPR007572 (Uncharacterised protein family Ycf20)
Location	Chr1 : 9647114 .. 9647581 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCACAATATGCTAGTTTAGTCCATACTAGCCTCTTAAATTATGGCTTTACTCACAAAATGAATCCTTCATATTGGAGATATGATATGGTTAAATCACGACCTTCCCCTCAACGTAGCTTTCGTGTCAAAGTTGTGCAAGATACCGAAGGTCCTAGTAGGATAGTTGATATCATTAGACTCGTGCCTGAGCTCTCAAGAAATTACTTTAGAAGTCCTTCGAGGAGGGCCCTTTTTGGATGAATCTCATTGTTGGGTGGCTTTTATGTGGCACAAAATATCTCATTGTCATTTGGAGCTTTTGGAGTAAATGATGTTTTTGCTACTGTGGTATGCATTCTCCTCACCGATGTTACTCGATTTTATTACAATCGACCAAAGGTAACTTTCCCCATTGCTCTACTGAACAACTTCAAAATGGGTTTCACTTGTGGTCTTTTCATTGATGCTTTCAAACTTACTATTTAA

mRNA sequence

ATGGCACAATATGCTAGTTTAGTCCATACTAGCCTCTTAAATTATGGCTTTACTCACAAAATGAATCCTTCATATTGGAGATATGATATGGTTAAATCACGACCTTCCCCTCAACGTAGCTTTCGTGTCAAAGTTGTGCAAGATACCGAAGGTCCTAGTAGGATAGTTGATATCATTAGACTCGTGCCTGAGCTCTCAAGAAATTACTTTAGAACTTTTGGAGTAAATGATGTTTTTGCTACTGTGGTATGCATTCTCCTCACCGATGTTACTCGATTTTATTACAATCGACCAAAGGTAACTTTCCCCATTGCTCTACTGAACAACTTCAAAATGGGTTTCACTTGTGGTCTTTTCATTGATGCTTTCAAACTTACTATTTAA

Coding sequence (CDS)

ATGGCACAATATGCTAGTTTAGTCCATACTAGCCTCTTAAATTATGGCTTTACTCACAAAATGAATCCTTCATATTGGAGATATGATATGGTTAAATCACGACCTTCCCCTCAACGTAGCTTTCGTGTCAAAGTTGTGCAAGATACCGAAGGTCCTAGTAGGATAGTTGATATCATTAGACTCGTGCCTGAGCTCTCAAGAAATTACTTTAGAACTTTTGGAGTAAATGATGTTTTTGCTACTGTGGTATGCATTCTCCTCACCGATGTTACTCGATTTTATTACAATCGACCAAAGGTAACTTTCCCCATTGCTCTACTGAACAACTTCAAAATGGGTTTCACTTGTGGTCTTTTCATTGATGCTTTCAAACTTACTATTTAA

Protein sequence

MAQYASLVHTSLLNYGFTHKMNPSYWRYDMVKSRPSPQRSFRVKVVQDTEGPSRIVDIIRLVPELSRNYFRTFGVNDVFATVVCILLTDVTRFYYNRPKVTFPIALLNNFKMGFTCGLFIDAFKLTI*

Homology

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BLAST of Csa1G144320 vs. TrEMBL
Match: A0A0A0LV86_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G144320 PE=4 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 4.0e-67
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 1


Query: 1   MAQYASLVHTSLLNYGFTHKMNPSYWRYDMVKSRPSPQRSFRVKVVQDTEGPSRIVDIIR 60
           MAQYASLVHTSLLNYGFTHKMNPSYWRYDMVKSRPSPQRSFRVKVVQDTEGPSRIVDIIR
Sbjct: 1   MAQYASLVHTSLLNYGFTHKMNPSYWRYDMVKSRPSPQRSFRVKVVQDTEGPSRIVDIIR 60

Query: 61  LVPELSRNYFRTFGVNDVFATVVCILLTDVTRFYYNRPKVTFPIALLNNFKMGFTCGLFI 120
           LVPELSRNYFRTFGVNDVFATVVCILLTDVTRFYYNRPKVTFPIALLNNFKMGFTCGLFI
Sbjct: 61  LVPELSRNYFRTFGVNDVFATVVCILLTDVTRFYYNRPKVTFPIALLNNFKMGFTCGLFI 120

Query: 121 DAFKLTI 128
           DAFKLTI
Sbjct: 121 DAFKLTI 127

[Close]

BLAST of Csa1G144320 vs. TrEMBL
Match: A0A0A0KPS1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G172820 PE=4 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 2.6e-50
Identity = 110/154 (71.43%), Postives = 115/154 (74.68%), Query Frame = 1


Query: 1   MAQYASLVHTSLLNYGFTHKMNPSYWRYDMVKSRPSPQRSFRVKVVQDTEGPSRIVDIIR 60
           MAQ ASLVHTSLLNYGFT KMNPSYWRYDMVKSRPSP RSFRVK VQDT GP R+VDIIR
Sbjct: 1   MAQSASLVHTSLLNYGFTPKMNPSYWRYDMVKSRPSPPRSFRVKAVQDTGGPRRLVDIIR 60

Query: 61  LVPELSRNYFRT----------------------------FGVNDVFATVVCILLTD-VT 120
           LVPELSRNYFR+                             GVNDV A VVC+LLT+ VT
Sbjct: 61  LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT 120

Query: 121 RFYYNRPKVTFPIALLNNFKMGFTCGLFIDAFKL 126
           RFYY+RPKVTFPIALLNNFKMGFT GLFIDAFKL
Sbjct: 121 RFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKL 154

[Close]

BLAST of Csa1G144320 vs. TrEMBL
Match: D7TMY2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0100g00310 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 8.7e-30
Identity = 79/154 (51.30%), Postives = 96/154 (62.34%), Query Frame = 1


Query: 1   MAQYASLVHTSLLNYGFTHKMNPSYWRYDMVKSRPSPQRSFRVKVVQDTEGPSRIVDIIR 60
           MA   SL  T LL +G       S+ +  M+ SR SP R F V+ VQ+ EGP R+VDIIR
Sbjct: 1   MAHSLSLPSTCLLKFGLATGTRVSHGKCSMLASRSSP-RFFSVQAVQENEGPRRLVDIIR 60

Query: 61  LVPELSRNYFRT----------------------------FGVNDVFATVVCILLTD-VT 120
           +VP+LSRNYF++                             GVNDV A V+C+L+T+ VT
Sbjct: 61  IVPQLSRNYFQSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVLCVLITEYVT 120

Query: 121 RFYYNRPKVTFPIALLNNFKMGFTCGLFIDAFKL 126
           RFYY+RPKVTFP+ALLNNFKMGFT GLFIDAFKL
Sbjct: 121 RFYYSRPKVTFPLALLNNFKMGFTYGLFIDAFKL 153

[Close]

BLAST of Csa1G144320 vs. TrEMBL
Match: A0A067JQQ7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26166 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 1.6e-28
Identity = 75/154 (48.70%), Postives = 93/154 (60.39%), Query Frame = 1


Query: 1   MAQYASLVHTSLLNYGFTHKMNPSYWRYDMVKSRPSPQRSFRVKVVQDTEGPSRIVDIIR 60
           MAQ  SL+HT  L  G +     S  +Y     + S +R F ++ VQ+  GP R+VD+IR
Sbjct: 1   MAQIVSLIHTGPLKLGPSPHRRISNGKYGTTVPK-SARRQFSIQAVQEDRGPRRLVDLIR 60

Query: 61  LVPELSRNYFRT----------------------------FGVNDVFATVVCILLTD-VT 120
           ++PE SRNYFR+                             GVNDV A V+C+LLT+ VT
Sbjct: 61  IIPEFSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVICVLLTEYVT 120

Query: 121 RFYYNRPKVTFPIALLNNFKMGFTCGLFIDAFKL 126
           RFYY+RPKVTFP+ALLNNFKMGFT GLFIDAFKL
Sbjct: 121 RFYYSRPKVTFPLALLNNFKMGFTYGLFIDAFKL 153

[Close]

BLAST of Csa1G144320 vs. TrEMBL
Match: B9R9H7_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1497610 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 1.8e-27
Identity = 77/154 (50.00%), Postives = 91/154 (59.09%), Query Frame = 1


Query: 1   MAQYASLVHTSLLNYGFTHKMNPSYWRYDMVKSRPSPQRSFRVKVVQDTEGPSRIVDIIR 60
           MA    L+ T  L  GF  +   S  +Y M+ SR S +    ++ VQD  GP R+VDIIR
Sbjct: 1   MALSIGLIQTVPLKLGFGFQRRVSCGKYGMLISRSS-RGLLSIQAVQDNGGPQRLVDIIR 60

Query: 61  LVPELSRNYFRT----------------------------FGVNDVFATVVCILLTD-VT 120
            VPE SRNYFR+                             GVNDV A V+C+LLT+ VT
Sbjct: 61  RVPEFSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVICVLLTEYVT 120

Query: 121 RFYYNRPKVTFPIALLNNFKMGFTCGLFIDAFKL 126
           RFYY+RPKVTFP+ALLNNFKMGFT GLFIDAFKL
Sbjct: 121 RFYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKL 153

[Close]

BLAST of Csa1G144320 vs. TAIR10
Match: AT5G43050.1 (AT5G43050.1 Protein of unknown function (DUF565))

HSP 1 Score: 114.0 bits (284), Expect = 6.8e-26
Identity = 68/156 (43.59%), Postives = 87/156 (55.77%), Query Frame = 1


Query: 1   MAQYASLVHTSLLNYGFTHKMNPSYWRYDMVKSRPSPQRSFRVKVVQDTEGPS--RIVDI 60
           MA   S + T+L +    H    S+  +     +   + +  ++ +Q+TEGP+  R++DI
Sbjct: 1   MAHSLSFISTNLNSLVLNHHQCQSFGTFVSSPFKRKRRFARSIRALQETEGPTPRRLIDI 60

Query: 61  IRLVPELSRNYFR----------------------------TFGVNDVFATVVCILLTD- 120
           IR VPE+SRNYF+                              GVNDV A V+C+LLT+ 
Sbjct: 61  IRSVPEISRNYFKKPSRRTLFGGISLLGGFYVAQTISLSFGALGVNDVIAAVLCVLLTEY 120

Query: 121 VTRFYYNRPKVTFPIALLNNFKMGFTCGLFIDAFKL 126
           VTRFYY+R  VTFPIALLNNFKMGFT GLFIDAFKL
Sbjct: 121 VTRFYYSRTTVTFPIALLNNFKMGFTYGLFIDAFKL 156

[Close]

BLAST of Csa1G144320 vs. NCBI nr
Match: gi|700209783|gb|KGN64879.1| (hypothetical protein Csa_1G144320 [Cucumis sativus])

HSP 1 Score: 261.9 bits (668), Expect = 5.7e-67
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 1


Query: 1   MAQYASLVHTSLLNYGFTHKMNPSYWRYDMVKSRPSPQRSFRVKVVQDTEGPSRIVDIIR 60
           MAQYASLVHTSLLNYGFTHKMNPSYWRYDMVKSRPSPQRSFRVKVVQDTEGPSRIVDIIR
Sbjct: 1   MAQYASLVHTSLLNYGFTHKMNPSYWRYDMVKSRPSPQRSFRVKVVQDTEGPSRIVDIIR 60

Query: 61  LVPELSRNYFRTFGVNDVFATVVCILLTDVTRFYYNRPKVTFPIALLNNFKMGFTCGLFI 120
           LVPELSRNYFRTFGVNDVFATVVCILLTDVTRFYYNRPKVTFPIALLNNFKMGFTCGLFI
Sbjct: 61  LVPELSRNYFRTFGVNDVFATVVCILLTDVTRFYYNRPKVTFPIALLNNFKMGFTCGLFI 120

Query: 121 DAFKLTI 128
           DAFKLTI
Sbjct: 121 DAFKLTI 127

[Close]

BLAST of Csa1G144320 vs. NCBI nr
Match: gi|449451787|ref|XP_004143642.1| (PREDICTED: uncharacterized protein ycf20 [Cucumis sativus])

HSP 1 Score: 206.1 bits (523), Expect = 3.7e-50
Identity = 110/154 (71.43%), Postives = 115/154 (74.68%), Query Frame = 1


Query: 1   MAQYASLVHTSLLNYGFTHKMNPSYWRYDMVKSRPSPQRSFRVKVVQDTEGPSRIVDIIR 60
           MAQ ASLVHTSLLNYGFT KMNPSYWRYDMVKSRPSP RSFRVK VQDT GP R+VDIIR
Sbjct: 1   MAQSASLVHTSLLNYGFTPKMNPSYWRYDMVKSRPSPPRSFRVKAVQDTGGPRRLVDIIR 60

Query: 61  LVPELSRNYFRT----------------------------FGVNDVFATVVCILLTD-VT 120
           LVPELSRNYFR+                             GVNDV A VVC+LLT+ VT
Sbjct: 61  LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT 120

Query: 121 RFYYNRPKVTFPIALLNNFKMGFTCGLFIDAFKL 126
           RFYY+RPKVTFPIALLNNFKMGFT GLFIDAFKL
Sbjct: 121 RFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKL 154

[Close]

BLAST of Csa1G144320 vs. NCBI nr
Match: gi|659073084|ref|XP_008467245.1| (PREDICTED: uncharacterized protein ycf20 isoform X1 [Cucumis melo])

HSP 1 Score: 198.0 bits (502), Expect = 1.0e-47
Identity = 106/154 (68.83%), Postives = 112/154 (72.73%), Query Frame = 1


Query: 1   MAQYASLVHTSLLNYGFTHKMNPSYWRYDMVKSRPSPQRSFRVKVVQDTEGPSRIVDIIR 60
           MAQ  SLVHT LLNYGF+ KMN SYWRYDMVKSRPSP RSFRVK VQDT GP R+VDIIR
Sbjct: 1   MAQSTSLVHTGLLNYGFSLKMNSSYWRYDMVKSRPSPPRSFRVKAVQDTGGPRRLVDIIR 60

Query: 61  LVPELSRNYFRT----------------------------FGVNDVFATVVCILLTD-VT 120
           LVPELSRNYFR+                             GVNDV A VVC+LLT+ VT
Sbjct: 61  LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT 120

Query: 121 RFYYNRPKVTFPIALLNNFKMGFTCGLFIDAFKL 126
           RFYY+RPKVTFPIALLNNFKMGFT GLFIDAFKL
Sbjct: 121 RFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKL 154

[Close]

BLAST of Csa1G144320 vs. NCBI nr
Match: gi|659073086|ref|XP_008467247.1| (PREDICTED: uncharacterized protein LOC103504644 isoform X2 [Cucumis melo])

HSP 1 Score: 149.4 bits (376), Expect = 4.2e-33
Identity = 81/128 (63.28%), Postives = 87/128 (67.97%), Query Frame = 1


Query: 1   MAQYASLVHTSLLNYGFTHKMNPSYWRYDMVKSRPSPQRSFRVKVVQDTEGPSRIVDIIR 60
           MAQ  SLVHT LLNYGF+ KMN SYWRYDMVKSRPSP RSFRVK VQDT GP R+VDIIR
Sbjct: 1   MAQSTSLVHTGLLNYGFSLKMNSSYWRYDMVKSRPSPPRSFRVKAVQDTGGPRRLVDIIR 60

Query: 61  LVPELSRNYFRT----------------------------FGVNDVFATVVCILLTD-VT 100
           LVPELSRNYFR+                             GVNDV A VVC+LLT+ VT
Sbjct: 61  LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT 120

[Close]

BLAST of Csa1G144320 vs. NCBI nr
Match: gi|659073088|ref|XP_008467248.1| (PREDICTED: uncharacterized protein LOC103504644 isoform X3 [Cucumis melo])

HSP 1 Score: 149.4 bits (376), Expect = 4.2e-33
Identity = 81/128 (63.28%), Postives = 87/128 (67.97%), Query Frame = 1


Query: 1   MAQYASLVHTSLLNYGFTHKMNPSYWRYDMVKSRPSPQRSFRVKVVQDTEGPSRIVDIIR 60
           MAQ  SLVHT LLNYGF+ KMN SYWRYDMVKSRPSP RSFRVK VQDT GP R+VDIIR
Sbjct: 1   MAQSTSLVHTGLLNYGFSLKMNSSYWRYDMVKSRPSPPRSFRVKAVQDTGGPRRLVDIIR 60

Query: 61  LVPELSRNYFRT----------------------------FGVNDVFATVVCILLTD-VT 100
           LVPELSRNYFR+                             GVNDV A VVC+LLT+ VT
Sbjct: 61  LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT 120

The following BLAST results are available for this feature:

BLAST of Csa1G144320 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LV86_CUCSA	4.0e-67	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G144320 PE=4 SV=1	[more]
A0A0A0KPS1_CUCSA	2.6e-50	71.43	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G172820 PE=4 SV=1	[more]
D7TMY2_VITVI	8.7e-30	51.30	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0100g00310 PE=4 SV=...	[more]
A0A067JQQ7_JATCU	1.6e-28	48.70	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26166 PE=4 SV=1	[more]
B9R9H7_RICCO	1.8e-27	50.00	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1497610 PE=4 SV=1	[more]

BLAST of Csa1G144320 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G43050.1	6.8e-26	43.59	Protein of unknown function (DUF565)	[more]

BLAST of Csa1G144320 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700209783\|gb\|KGN64879.1\|	5.7e-67	100.00	hypothetical protein Csa_1G144320 [Cucumis sativus]	[more]
gi\|449451787\|ref\|XP_004143642.1\|	3.7e-50	71.43	PREDICTED: uncharacterized protein ycf20 [Cucumis sativus]	[more]
gi\|659073084\|ref\|XP_008467245.1\|	1.0e-47	68.83	PREDICTED: uncharacterized protein ycf20 isoform X1 [Cucumis melo]	[more]
gi\|659073086\|ref\|XP_008467247.1\|	4.2e-33	63.28	PREDICTED: uncharacterized protein LOC103504644 isoform X2 [Cucumis melo]	[more]
gi\|659073088\|ref\|XP_008467248.1\|	4.2e-33	63.28	PREDICTED: uncharacterized protein LOC103504644 isoform X3 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007572	Uncharacterised_Ycf20

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa1G144320.1	Csa1G144320.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007572	Uncharacterised protein family Ycf20	PFAM	PF04483	DUF565	coord: 74..125 score: 1.2
None	No IPR available	PANTHER	PTHR33787	FAMILY NOT NAMED	coord: 6..125 score: 2.3
None	No IPR available	PANTHER	PTHR33787:SF2	SUBFAMILY NOT NAMED	coord: 6..125 score: 2.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa1G144320	CSPI01G14180	Wild cucumber (PI 183967)	cpicuB000
Csa1G144320	Cucsa.200180	Cucumber (Gy14) v1	cgycuB305

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa1G144320	Cucurbita maxima (Rimu)	cmacuB163
Csa1G144320	Cucurbita maxima (Rimu)	cmacuB203
Csa1G144320	Cucurbita maxima (Rimu)	cmacuB579
Csa1G144320	Cucurbita moschata (Rifu)	cmocuB148
Csa1G144320	Cucurbita moschata (Rifu)	cmocuB188
Csa1G144320	Melon (DHL92) v3.5.1	cumeB015
Csa1G144320	Watermelon (Charleston Gray)	cuwcgB024
Csa1G144320	Watermelon (Charleston Gray)	cuwcgB028
Csa1G144320	Watermelon (97103) v1	cuwmB045
Csa1G144320	Watermelon (97103) v1	cuwmB065
Csa1G144320	Cucurbita pepo (Zucchini)	cpecuB516
Csa1G144320	Cucurbita pepo (Zucchini)	cpecuB808
Csa1G144320	Bottle gourd (USVL1VR-Ls)	culsiB005
Csa1G144320	Bottle gourd (USVL1VR-Ls)	culsiB044
Csa1G144320	Cucumber (Gy14) v2	cgybcuB001
Csa1G144320	Melon (DHL92) v3.6.1	cumedB010
Csa1G144320	Silver-seed gourd	carcuB0185
Csa1G144320	Watermelon (97103) v2	cuwmbB009
Csa1G144320	Watermelon (97103) v2	cuwmbB026
Csa1G144320	Wax gourd	cuwgoB049