Cucsa.199120 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.199120
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	VQ motif-containing protein, putative
Location	scaffold01357 : 1923147 .. 1923680 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTCCTCAACAACAGCAACAACAAATCCATGGAAAAATGGATAATCAGATCACCAACAATGGGAATAATAAACCAATATTGTGTCCACCGCCATTGAAGATCAATAAGGATTCTCATTTGATTCGAAAAACTTCCTCTTCTTCAAATACTTCTTCCCCTTCTTCCTCTTCATCTTCCACCACCTCTCTTGCCAATGGGGTCGCTGCTGCTGCTGCGAAGCCACCACCTCAACGACATCCGGTGATTATATACACACATTCTCCCAAAATCATTCACACGCATCCTCGAGATTTCATGGCGTTGGTTCAAAAGCTAACCGGAATGTCTCGATCAGATCATGATCATGAAGCTTCTACCACGAAGCTGGCTACAACGAAATCCGCCGTGGATGAGAATAATAATAATAATAATAATAATAATAAAGGTTCTAAAGCTGCTGTTGTGAATGATGATAATGAATCGTCGTCCGTTGTGACGACGGATGAAAATTGTTGCGGCGGCGGTGGAAGCGGTTTGATGGAAGTTGGTCAG

mRNA sequence

ATGAGTCCTCAACAACAGCAACAACAAATCCATGGAAAAATGGATAATCAGATCACCAACAATGGGAATAATAAACCAATATTGTGTCCACCGCCATTGAAGATCAATAAGGATTCTCATTTGATTCGAAAAActtcctcttcttcaaatacttcttccccttcttcctcttcatcttcCACCACCTCTCTTGCCAATGGGGTCGCTGCTGCTGCTGCGAAGCCACCACCTCAACGACATCCGGTGATTATATACACACATTCTCCCAAAATCATTCACACGCATCCTCGAGATTTCATGGCGTTGGTTCAAAAGCTAACCGGAATGTCTCGATCAGATCATGATCATGAAGCTTCTACCACGAAGCTGGCTACAACGAAATCCGCCGTGGATGAGaataataataataataataataataataaAGGTTCTAAAGCTGCTGTTGTGAATGATGATAATGAATCGTCGTCCGTTGTGACGACGGATGAAAATTGTTGCGGCGGCGGTGGAAGCGGTTTGATGGAAGTTGGTCAG

Coding sequence (CDS)

ATGAGTCCTCAACAACAGCAACAACAAATCCATGGAAAAATGGATAATCAGATCACCAACAATGGGAATAATAAACCAATATTGTGTCCACCGCCATTGAAGATCAATAAGGATTCTCATTTGATTCGAAAAACTTCCTCTTCTTCAAATACTTCTTCCCCTTCTTCCTCTTCATCTTCCACCACCTCTCTTGCCAATGGGGTCGCTGCTGCTGCTGCGAAGCCACCACCTCAACGACATCCGGTGATTATATACACACATTCTCCCAAAATCATTCACACGCATCCTCGAGATTTCATGGCGTTGGTTCAAAAGCTAACCGGAATGTCTCGATCAGATCATGATCATGAAGCTTCTACCACGAAGCTGGCTACAACGAAATCCGCCGTGGATGAGAATAATAATAATAATAATAATAATAATAAAGGTTCTAAAGCTGCTGTTGTGAATGATGATAATGAATCGTCGTCCGTTGTGACGACGGATGAAAATTGTTGCGGCGGCGGTGGAAGCGGTTTGATGGAAGTTGGTCAG

Protein sequence

MSPQQQQQQIHGKMDNQITNNGNNKPILCPPPLKINKDSHLIRKTSSSSNTSSPSSSSSSTTSLANGVAAAAAKPPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDHDHEASTTKLATTKSAVDENNNNNNNNNKGSKAAVVNDDNESSSVVTTDENCCGGGGSGLMEVGQ

Homology

[Close]

BLAST of Cucsa.199120 vs. Swiss-Prot
Match: VQ20_ARATH (VQ motif-containing protein 20 OS=Arabidopsis thaliana GN=VQ20 PE=2 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 2.7e-22
Identity = 72/183 (39.34%), Postives = 94/183 (51.37%), Query Frame = 1


Query: 11  HGKMDNQITNNG---NNKPILCPPPLKINKDSHLIRKTSSSSNTSSPSSSSSSTTSLANG 70
           H K +    N+G      P   PP LK+NKDSH+I+K  S S+ SS              
Sbjct: 21  HPKREPNENNSGILYTPSPSPSPPTLKVNKDSHVIKKPPSPSSFSS-------------- 80

Query: 71  VAAAAAKPPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDHD----------HE 130
               AAKP   RHPVIIYTH+P+IIHT+P+DFMALVQKLTGM+ SD D            
Sbjct: 81  ----AAKP---RHPVIIYTHTPRIIHTNPKDFMALVQKLTGMTHSDEDLGGGNAMTDPGV 140

Query: 131 ASTTKLATTKSAVDENNNNN-----NNNNKGSKAA-----------VVNDDNESSSVVTT 165
             +     ++  VD  NN N     NN  +    A           ++++D+ESSSV+TT
Sbjct: 141 VKSINRTVSEPTVDRKNNRNRCGGGNNYLRNYSGAGNGKGIFFNNTMISEDSESSSVITT 182

[Close]

BLAST of Cucsa.199120 vs. Swiss-Prot
Match: NSRB_ARATH (Nuclear speckle RNA-binding protein B OS=Arabidopsis thaliana GN=NSRB PE=2 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.0e-09
Identity = 50/164 (30.49%), Postives = 79/164 (48.17%), Query Frame = 1


Query: 14  MDNQITNN-GNNKPILCPPPLKINKDSH-LIRKTSSSSNTSSPSSSSSSTTSLANGVAAA 73
           MDN+   + GN  P   P PLK+  DSH +I+K   +     P    +           +
Sbjct: 1   MDNRSPRSRGNMGPK--PTPLKVRGDSHKIIKKPPLAPPHPQPQPPQTHQQE------PS 60

Query: 74  AAKPPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDHDHEASTTKLATTKSAVD 133
            ++PPP   PV IYT +P+IIHTHP +FM LVQ+LTG + +     +S++  +  K    
Sbjct: 61  QSRPPPG--PVNIYTVTPRIIHTHPNNFMTLVQRLTGQTSTSTTSSSSSSSTSEPKDTST 120

Query: 134 ENNNNNNNNNKGSKAAVVNDDNESSSVVTTDENCCGGGGSGLME 176
             + ++   +  ++ AV    N S+ + T        GG G M+
Sbjct: 121 MVDTSHGLISPAARFAVTEKANISNELGTF------VGGEGTMD 148

[Close]

BLAST of Cucsa.199120 vs. Swiss-Prot
Match: VQ8_ARATH (VQ motif-containing protein 8, chloroplastic OS=Arabidopsis thaliana GN=VQ8 PE=2 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 9.9e-09
Identity = 40/111 (36.04%), Postives = 52/111 (46.85%), Query Frame = 1


Query: 30  PPPLKINKDSHLIRKTSSSSNTSSPSSSSSSTTSLANGVAAAAAKPPPQRHPVIIYTHSP 89
           P  LK+  +SH I+KTSS  +   P   +S                     PVIIY HSP
Sbjct: 14  PSSLKLAGESHTIKKTSSCKSKPRPHGRAS---------------------PVIIYAHSP 73

Query: 90  KIIHTHPRDFMALVQKLTGMSRSDHDHEASTTKLATTKSAVDENNNNNNNN 141
           K+IHT   DFMALVQ+LTG+     D         ++ S V E  N  ++N
Sbjct: 74  KVIHTRAEDFMALVQRLTGL-----DEIIRRNTSESSSSVVTEEVNVGDDN 98

[Close]

BLAST of Cucsa.199120 vs. Swiss-Prot
Match: IRLA_DICDI (Probable serine/threonine-protein kinase irlA OS=Dictyostelium discoideum GN=irlA PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.6e-06
Identity = 51/157 (32.48%), Postives = 70/157 (44.59%), Query Frame = 1


Query: 6   QQQQIHGKMDNQITNNGNNKPI-------LCPPPLKINKDSHLIRKTSSSSNTSSPSSSS 65
           Q Q+ +   +NQ  NN  N P        + PP   +N    +I  TSSS+ +SS SS++
Sbjct: 752 QNQKNNNNQNNQSNNNKINSPSSNKLTQNVTPPSSPVN----II--TSSSTTSSSTSSTT 811

Query: 66  SSTTSLANGVAAAAAKPPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDHDHEA 125
           SSTTS     +    KPP Q  P  I T SP               K      S  D   
Sbjct: 812 SSTTS-----STIEPKPPTQTLP--IKTSSPT--------------KPESQKPSTPDPLI 871

Query: 126 STTKLATTKSAVDENNNNNNNNNKGSKAAVVNDDNES 156
             +  +TTK+  + NNNNNNNNN  +     N++ E+
Sbjct: 872 PKSSKSTTKNNNNNNNNNNNNNNNNNNNNNNNNNKEN 881

HSP 2 Score: 46.6 bits (109), Expect = 3.3e-04
Identity = 48/161 (29.81%), Postives = 72/161 (44.72%), Query Frame = 1


Query: 6   QQQQIHGKMDNQITNNGNNKPI-------LCPPPLKINKDSHLIRKTSSSSNTSSPSSSS 65
           Q Q+ +   +NQ  NN  N P        + PP   +N    +I  TSSS+ +SS SS++
Sbjct: 752 QNQKNNNNQNNQSNNNKINSPSSNKLTQNVTPPSSPVN----II--TSSSTTSSSTSSTT 811

Query: 66  SSTTSLANGVAAAAAKPPPQRHPVIIYTHSP-KIIHTHPRDFMALVQKLTGMSRSDHDHE 125
           SSTTS     +    KPP Q  P  I T SP K     P     L+ K +  +  ++++ 
Sbjct: 812 SSTTS-----STIEPKPPTQTLP--IKTSSPTKPESQKPSTPDPLIPKSSKSTTKNNNNN 871

Query: 126 ASTTKLATTKSAVDENNNNNNNNNKGSKAAVVNDDNESSSV 159
            +        +  + NNNNNNN      A  V ++ E   +
Sbjct: 872 NNNNNNNNNNN--NNNNNNNNNKENREMALEVINEMEKIEI 897

HSP 3 Score: 33.1 bits (74), Expect = 3.8e+00
Identity = 14/47 (29.79%), Postives = 22/47 (46.81%), Query Frame = 1


Query: 108 GMSRSDHDHEASTTKLATTKSAVDENNNNNNNNNKGSKAAVVNDDNE 155
           G      + E    K +   S+   NNNN+NNNN G +  V  ++ +
Sbjct: 33  GGEEGGEEEEIDNNKNSNNSSSNSNNNNNDNNNNNGEERKVEKEEEK 79

HSP 4 Score: 29.3 bits (64), Expect = 5.5e+01
Identity = 11/34 (32.35%), Postives = 18/34 (52.94%), Query Frame = 1


Query: 125 TTKSAVDENNNNNNNNNKGSKAAVVNDDNESSSV 159
           +  S+ + NNNNN+NNN   +   V  + E   +
Sbjct: 49  SNNSSSNSNNNNNDNNNNNGEERKVEKEEEKEEI 82

HSP 5 Score: 26.9 bits (58), Expect = 2.7e+02
Identity = 10/19 (52.63%), Postives = 12/19 (63.16%), Query Frame = 1


Query: 131  DENNNNNNNNNKGSKAAVV 150
            + NNNNNNN     K A+V
Sbjct: 1327 NNNNNNNNNKQNSKKLAIV 1345

[Close]

BLAST of Cucsa.199120 vs. Swiss-Prot
Match: MKS1_ARATH (Protein MKS1 OS=Arabidopsis thaliana GN=MKS1 PE=1 SV=2)

HSP 1 Score: 52.0 bits (123), Expect = 7.9e-06
Identity = 42/153 (27.45%), Postives = 68/153 (44.44%), Query Frame = 1


Query: 30  PPPLKINKDSHLIRKTSSSSNTSSPSSSSSSTTSLANGVAAAAAKPPPQ--RHPVIIYTH 89
           P PL ++KDSH I+K     + + P +                 +PPP   R PV+IY  
Sbjct: 29  PSPLSVHKDSHKIKKPPK--HPAPPPNRD---------------QPPPYIPREPVVIYAV 88

Query: 90  SPKIIHTHPRDFMALVQKLTGMS-----RSDHDHEAS-TTKLATTKSAVDENNNNNNNNN 149
           SPK++H    +FM +VQ+LTG+S      S    + S   +LA+T++A          + 
Sbjct: 89  SPKVVHATASEFMNVVQRLTGISSGVFLESGGGGDVSPAARLASTENA----------SP 148

Query: 150 KGSKAAVVNDDNESSSVVTTDENCCGGGGSGLM 175
           +G K     D+    +    +    GG   G++
Sbjct: 149 RGGKEPAARDETVEINTAMEEAAEFGGYAPGIL 154

[Close]

BLAST of Cucsa.199120 vs. TrEMBL
Match: A0A0A0LPK7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G023620 PE=4 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 5.4e-70
Identity = 142/178 (79.78%), Postives = 143/178 (80.34%), Query Frame = 1


Query: 1   MSPQQQQQQIHGKMDNQITNNGNNKPILCPPPLKINKDSHLIRKTSSSSNTSSPSSSSSS 60
           MSPQQQQQQIHGKMDNQITNNGNNKPILCPPPLKINKDSHLIRKTSSSSNTSSPSSSSSS
Sbjct: 1   MSPQQQQQQIHGKMDNQITNNGNNKPILCPPPLKINKDSHLIRKTSSSSNTSSPSSSSSS 60

Query: 61  TTSLANGVAAAAAKPPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDHDHEAST 120
           TTSLANGVAAAAAKPPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTG+           
Sbjct: 61  TTSLANGVAAAAAKPPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGIC---------- 120

Query: 121 TKLATTKSAVDENNNNNNNNNKGSKAAVVNDDNESSSVVTTDENCCGGGGSGLMEVGQ 179
                                   KAAVVNDDNESSSVVTTDENCCGGGGSGLMEVGQ
Sbjct: 121 ----------------------CCKAAVVNDDNESSSVVTTDENCCGGGGSGLMEVGQ 146

[Close]

BLAST of Cucsa.199120 vs. TrEMBL
Match: A0A0A0LKA6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G350280 PE=4 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 6.0e-61
Identity = 140/179 (78.21%), Postives = 143/179 (79.89%), Query Frame = 1


Query: 1   MSPQQQQQQIHGKMDNQITNNGNNKPILCPPPLKINKDSHLIRKTSSSSNTSSPSSSSSS 60
           MSPQQQQQ IHGK DNQ TNN  NKP+  PP LKINKDSHLIRK+SSSSNTSSPSSSSSS
Sbjct: 1   MSPQQQQQ-IHGKRDNQ-TNNNANKPLSPPPLLKINKDSHLIRKSSSSSNTSSPSSSSSS 60

Query: 61  TTSLANGVAAAAAKPPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDHDHEAST 120
           TTSL NGV   AA  PPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRS  D EAST
Sbjct: 61  TTSLLNGVIPTAAAKPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRS--DDEAST 120

Query: 121 TKLATTKSAVDENNNNNNNNNKGSKAAVVNDDNESSSVVTTDENCCGG-GGSGLMEVGQ 179
              AT KS VDE       NNK SK  VVNDDNESSSVVTTDENCCGG G SG +E GQ
Sbjct: 121 K--ATAKSVVDE-------NNKASK--VVNDDNESSSVVTTDENCCGGSGSSGAVEGGQ 164

[Close]

BLAST of Cucsa.199120 vs. TrEMBL
Match: B9T1N8_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1158870 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 7.8e-37
Identity = 91/171 (53.22%), Postives = 109/171 (63.74%), Query Frame = 1


Query: 1   MSPQQQQQQIHGKMDNQITNNGNNKPILCPPPLKINKDSHLIRKTSSSSNTSSPSSSSSS 60
           MSP       H K +N  T+      +LCPPPLK++KDSH I+K+SSS+ +S PSSS S 
Sbjct: 1   MSPSPSFHDHHAKPNNNTTS------MLCPPPLKVSKDSHTIKKSSSSTLSSPPSSSCSF 60

Query: 61  TTSLANGVAAAAAKPPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDHDHEAST 120
           ++S ++   A  AKPP QRHPVIIYTHSPKIIHTHPRDFMALVQKLTG+S S  D     
Sbjct: 61  SSSASSLAVAGPAKPPQQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGLSHSSLDQAPRA 120

Query: 121 TKLATTKSAVDENNNNNNNNNKGSKAAVVNDDNESSSVVTTDENCCGGGGS 172
            +     S+ DE       NNK     V NDDNESSSV+ T+EN CG   S
Sbjct: 121 KQEEGKLSSEDE-------NNKSRMKIVGNDDNESSSVI-TEENNCGNNSS 157

[Close]

BLAST of Cucsa.199120 vs. TrEMBL
Match: M5WRN8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa020153mg PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 1.3e-36
Identity = 93/188 (49.47%), Postives = 118/188 (62.77%), Query Frame = 1


Query: 20  NNGNNKPILCPPPLKINKDSHLIRKTSSSSNTSSPSSSSSSTTSLANGVAAAA-AKPPPQ 79
           NN NN  +  PP LKINKDSH I+K+ SSS++S  SS+SSST+SL N VA +A A+PPPQ
Sbjct: 18  NNNNNNGLYPPPSLKINKDSHFIKKSPSSSSSSPSSSASSSTSSLVNAVAGSACARPPPQ 77

Query: 80  ---RHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDHDHEAS----------TTKLAT 139
              RHPVIIYTHSPKIIHTHPRDFMALVQKLTG+SR D D + +          TTK   
Sbjct: 78  QQQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGLSRFDEDAQVAPPQQQQQPQRTTKAER 137

Query: 140 TKSAVDENNNNNNNNNKGSKAAVVNDDNESSSVVTTDENC-----------------CGG 177
            +  ++E       + KG+   + N+DN+SSSV+T +ENC                  GG
Sbjct: 138 GEGLLEE----EMMSGKGANVVMRNEDNDSSSVITAEENCSSTNIINSNINLGVSVGVGG 197

[Close]

BLAST of Cucsa.199120 vs. TrEMBL
Match: A0A067JBM1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05897 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 2.8e-34
Identity = 87/148 (58.78%), Postives = 102/148 (68.92%), Query Frame = 1


Query: 21  NGNNKPILCPPPLKINKDSHLIRKTSSSSNTSSPSSSSSSTTSLANGVAAAAAKPP-PQR 80
           N NN    CPPPLKINKDSH+I+K+SSSSN+S PSSSSSS+ S    V  A   P  PQR
Sbjct: 9   NNNN----CPPPLKINKDSHMIKKSSSSSNSSPPSSSSSSSASSLTVVGPAKLPPQGPQR 68

Query: 81  HPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDHDHEASTTKLATTKSAVDENNNNNNN 140
           HPVIIYTHSPKIIHT+P+DFM LVQKLTG+SR + DH     K   + S+ DE + N  +
Sbjct: 69  HPVIIYTHSPKIIHTNPKDFMQLVQKLTGLSRPEDDH-PPRVKQEKSNSSQDEESKNVRS 128

Query: 141 NNKGSKAAVVNDDNESSSVVTTDENCCG 168
              G      NDDNESSSV+ T+ENC G
Sbjct: 129 IGNG------NDDNESSSVI-TEENCGG 144

[Close]

BLAST of Cucsa.199120 vs. TAIR10
Match: AT3G18360.1 (AT3G18360.1 VQ motif-containing protein)

HSP 1 Score: 106.7 bits (265), Expect = 1.5e-23
Identity = 72/183 (39.34%), Postives = 94/183 (51.37%), Query Frame = 1


Query: 11  HGKMDNQITNNG---NNKPILCPPPLKINKDSHLIRKTSSSSNTSSPSSSSSSTTSLANG 70
           H K +    N+G      P   PP LK+NKDSH+I+K  S S+ SS              
Sbjct: 21  HPKREPNENNSGILYTPSPSPSPPTLKVNKDSHVIKKPPSPSSFSS-------------- 80

Query: 71  VAAAAAKPPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDHD----------HE 130
               AAKP   RHPVIIYTH+P+IIHT+P+DFMALVQKLTGM+ SD D            
Sbjct: 81  ----AAKP---RHPVIIYTHTPRIIHTNPKDFMALVQKLTGMTHSDEDLGGGNAMTDPGV 140

Query: 131 ASTTKLATTKSAVDENNNNN-----NNNNKGSKAA-----------VVNDDNESSSVVTT 165
             +     ++  VD  NN N     NN  +    A           ++++D+ESSSV+TT
Sbjct: 141 VKSINRTVSEPTVDRKNNRNRCGGGNNYLRNYSGAGNGKGIFFNNTMISEDSESSSVITT 182

[Close]

BLAST of Cucsa.199120 vs. TAIR10
Match: AT1G21326.1 (AT1G21326.1 VQ motif-containing protein)

HSP 1 Score: 65.1 bits (157), Expect = 5.1e-11
Identity = 46/147 (31.29%), Postives = 72/147 (48.98%), Query Frame = 1


Query: 30  PPPLKINKDSH-LIRKTSSSSNTSSPSSSSSSTTSLANGVAAAAAKPPPQRHPVIIYTHS 89
           P PLK+  DSH +I+K   +     P    +           + ++PPP   PVIIYT S
Sbjct: 16  PIPLKVRGDSHKIIKKPPLAPPHPQPQPPQTHQQE------PSQSRPPPG--PVIIYTVS 75

Query: 90  PKIIHTHPRDFMALVQKLTGMSRSDHDHEASTTKLATTKSAVDENNNNNNNNNKGSKAAV 149
           P+IIHTHP +FM LVQ+LTG + +     + ++  +  K A    + ++   +  ++ AV
Sbjct: 76  PRIIHTHPNNFMTLVQRLTGKTSTSTTSSSYSSSTSAPKDASTMVDTSHGLISPAARFAV 135

Query: 150 VNDDNESSSVVTTDENCCGGGGSGLME 176
               N S+ + T        GG G M+
Sbjct: 136 TEKANISNELGTF------VGGEGTMD 148

[Close]

BLAST of Cucsa.199120 vs. TAIR10
Match: AT1G21320.1 (AT1G21320.1 nucleotide binding;nucleic acid binding)

HSP 1 Score: 63.9 bits (154), Expect = 1.1e-10
Identity = 50/164 (30.49%), Postives = 79/164 (48.17%), Query Frame = 1


Query: 14  MDNQITNN-GNNKPILCPPPLKINKDSH-LIRKTSSSSNTSSPSSSSSSTTSLANGVAAA 73
           MDN+   + GN  P   P PLK+  DSH +I+K   +     P    +           +
Sbjct: 1   MDNRSPRSRGNMGPK--PTPLKVRGDSHKIIKKPPLAPPHPQPQPPQTHQQE------PS 60

Query: 74  AAKPPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDHDHEASTTKLATTKSAVD 133
            ++PPP   PV IYT +P+IIHTHP +FM LVQ+LTG + +     +S++  +  K    
Sbjct: 61  QSRPPPG--PVNIYTVTPRIIHTHPNNFMTLVQRLTGQTSTSTTSSSSSSSTSEPKDTST 120

Query: 134 ENNNNNNNNNKGSKAAVVNDDNESSSVVTTDENCCGGGGSGLME 176
             + ++   +  ++ AV    N S+ + T        GG G M+
Sbjct: 121 MVDTSHGLISPAARFAVTEKANISNELGTF------VGGEGTMD 148

[Close]

BLAST of Cucsa.199120 vs. TAIR10
Match: AT1G68450.1 (AT1G68450.1 VQ motif-containing protein)

HSP 1 Score: 61.6 bits (148), Expect = 5.6e-10
Identity = 40/111 (36.04%), Postives = 52/111 (46.85%), Query Frame = 1


Query: 30  PPPLKINKDSHLIRKTSSSSNTSSPSSSSSSTTSLANGVAAAAAKPPPQRHPVIIYTHSP 89
           P  LK+  +SH I+KTSS  +   P   +S                     PVIIY HSP
Sbjct: 14  PSSLKLAGESHTIKKTSSCKSKPRPHGRAS---------------------PVIIYAHSP 73

Query: 90  KIIHTHPRDFMALVQKLTGMSRSDHDHEASTTKLATTKSAVDENNNNNNNN 141
           K+IHT   DFMALVQ+LTG+     D         ++ S V E  N  ++N
Sbjct: 74  KVIHTRAEDFMALVQRLTGL-----DEIIRRNTSESSSSVVTEEVNVGDDN 98

[Close]

BLAST of Cucsa.199120 vs. TAIR10
Match: AT3G18690.1 (AT3G18690.1 MAP kinase substrate 1)

HSP 1 Score: 52.0 bits (123), Expect = 4.4e-07
Identity = 42/153 (27.45%), Postives = 68/153 (44.44%), Query Frame = 1


Query: 30  PPPLKINKDSHLIRKTSSSSNTSSPSSSSSSTTSLANGVAAAAAKPPPQ--RHPVIIYTH 89
           P PL ++KDSH I+K     + + P +                 +PPP   R PV+IY  
Sbjct: 29  PSPLSVHKDSHKIKKPPK--HPAPPPNRD---------------QPPPYIPREPVVIYAV 88

Query: 90  SPKIIHTHPRDFMALVQKLTGMS-----RSDHDHEAS-TTKLATTKSAVDENNNNNNNNN 149
           SPK++H    +FM +VQ+LTG+S      S    + S   +LA+T++A          + 
Sbjct: 89  SPKVVHATASEFMNVVQRLTGISSGVFLESGGGGDVSPAARLASTENA----------SP 148

Query: 150 KGSKAAVVNDDNESSSVVTTDENCCGGGGSGLM 175
           +G K     D+    +    +    GG   G++
Sbjct: 149 RGGKEPAARDETVEINTAMEEAAEFGGYAPGIL 154

[Close]

BLAST of Cucsa.199120 vs. NCBI nr
Match: gi|778664725|ref|XP_004138347.2| (PREDICTED: VQ motif-containing protein 20 [Cucumis sativus])

HSP 1 Score: 286.6 bits (732), Expect = 3.0e-74
Identity = 144/149 (96.64%), Postives = 145/149 (97.32%), Query Frame = 1


Query: 1   MSPQQQQQQIHGKMDNQITNNGNNKPILCPPPLKINKDSHLIRKTSSSSNTSSPSSSSSS 60
           MSPQQQQQQIHGKMDNQITNNGNNKPILCPPPLKINKDSHLIRKTSSSSNTSSPSSSSSS
Sbjct: 1   MSPQQQQQQIHGKMDNQITNNGNNKPILCPPPLKINKDSHLIRKTSSSSNTSSPSSSSSS 60

Query: 61  TTSLANGVAAAAAKPPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDHDHEAST 120
           TTSLANGVAAAAAKPPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDHDHEAST
Sbjct: 61  TTSLANGVAAAAAKPPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDHDHEAST 120

Query: 121 TKLATTKSAVDENNNNNNNNNKGSKAAVV 150
           TKLATTKSAVDENNNNNNN    +KAAVV
Sbjct: 121 TKLATTKSAVDENNNNNNN----TKAAVV 145

[Close]

BLAST of Cucsa.199120 vs. NCBI nr
Match: gi|659107464|ref|XP_008453685.1| (PREDICTED: protein MKS1 [Cucumis melo])

HSP 1 Score: 273.1 bits (697), Expect = 3.5e-70
Identity = 156/183 (85.25%), Postives = 159/183 (86.89%), Query Frame = 1


Query: 1   MSPQQQQQQIHGKMDNQITNNGNNKPILCPPPLKINKDSHLIRKTSSSSN--TSSPSSSS 60
           MSPQQQ   IHGK DNQI NNGN KPILCPPPLKINKDSHLIRKTSSSSN  TSSPSSSS
Sbjct: 1   MSPQQQ---IHGKRDNQINNNGN-KPILCPPPLKINKDSHLIRKTSSSSNNTTSSPSSSS 60

Query: 61  SSTTSLANGVAAAAAKP--PPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDHDH 120
           SSTTSL NGVAAAAA    P QRHPVIIYTHSPK+IHTHPRDFMALVQKLTGMSRSD DH
Sbjct: 61  SSTTSLVNGVAAAAAAAAKPLQRHPVIIYTHSPKVIHTHPRDFMALVQKLTGMSRSD-DH 120

Query: 121 EASTTKLATTKSAVDENNNNNNNNNKGSKAAVVNDDNESSSVVTTDENCC-GGGGSGLME 179
           EAS TKLATTK  VDE    NNNNNKGSK AVV+DDNESSSVVTTDENCC GGGGSG+ME
Sbjct: 121 EAS-TKLATTKPVVDE----NNNNNKGSK-AVVSDDNESSSVVTTDENCCGGGGGSGMME 172

[Close]

BLAST of Cucsa.199120 vs. NCBI nr
Match: gi|700208729|gb|KGN63825.1| (hypothetical protein Csa_1G023620 [Cucumis sativus])

HSP 1 Score: 271.9 bits (694), Expect = 7.7e-70
Identity = 142/178 (79.78%), Postives = 143/178 (80.34%), Query Frame = 1


Query: 1   MSPQQQQQQIHGKMDNQITNNGNNKPILCPPPLKINKDSHLIRKTSSSSNTSSPSSSSSS 60
           MSPQQQQQQIHGKMDNQITNNGNNKPILCPPPLKINKDSHLIRKTSSSSNTSSPSSSSSS
Sbjct: 1   MSPQQQQQQIHGKMDNQITNNGNNKPILCPPPLKINKDSHLIRKTSSSSNTSSPSSSSSS 60

Query: 61  TTSLANGVAAAAAKPPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDHDHEAST 120
           TTSLANGVAAAAAKPPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTG+           
Sbjct: 61  TTSLANGVAAAAAKPPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGIC---------- 120

Query: 121 TKLATTKSAVDENNNNNNNNNKGSKAAVVNDDNESSSVVTTDENCCGGGGSGLMEVGQ 179
                                   KAAVVNDDNESSSVVTTDENCCGGGGSGLMEVGQ
Sbjct: 121 ----------------------CCKAAVVNDDNESSSVVTTDENCCGGGGSGLMEVGQ 146

[Close]

BLAST of Cucsa.199120 vs. NCBI nr
Match: gi|778674275|ref|XP_004143051.2| (PREDICTED: VQ motif-containing protein 20-like [Cucumis sativus])

HSP 1 Score: 241.9 bits (616), Expect = 8.6e-61
Identity = 140/179 (78.21%), Postives = 143/179 (79.89%), Query Frame = 1


Query: 1   MSPQQQQQQIHGKMDNQITNNGNNKPILCPPPLKINKDSHLIRKTSSSSNTSSPSSSSSS 60
           MSPQQQQQ IHGK DNQ TNN  NKP+  PP LKINKDSHLIRK+SSSSNTSSPSSSSSS
Sbjct: 1   MSPQQQQQ-IHGKRDNQ-TNNNANKPLSPPPLLKINKDSHLIRKSSSSSNTSSPSSSSSS 60

Query: 61  TTSLANGVAAAAAKPPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDHDHEAST 120
           TTSL NGV   AA  PPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRS  D EAST
Sbjct: 61  TTSLLNGVIPTAAAKPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRS--DDEAST 120

Query: 121 TKLATTKSAVDENNNNNNNNNKGSKAAVVNDDNESSSVVTTDENCCGG-GGSGLMEVGQ 179
              AT KS VDE       NNK SK  VVNDDNESSSVVTTDENCCGG G SG +E GQ
Sbjct: 121 K--ATAKSVVDE-------NNKASK--VVNDDNESSSVVTTDENCCGGSGSSGAVEGGQ 164

[Close]

BLAST of Cucsa.199120 vs. NCBI nr
Match: gi|659089521|ref|XP_008445554.1| (PREDICTED: integrator complex subunit 6 homolog [Cucumis melo])

HSP 1 Score: 234.6 bits (597), Expect = 1.4e-58
Identity = 140/179 (78.21%), Postives = 143/179 (79.89%), Query Frame = 1


Query: 1   MSPQQQQQQIHGKMDNQITNNGNNKPILCPPPLKINKDSHLIRKTSSSSNTSSPSSSSSS 60
           MSPQ QQQQIHGK DNQI NN N KP L PP LKINKDSHLIRK+SSSSNTSSPSSSSSS
Sbjct: 1   MSPQHQQQQIHGKRDNQINNNAN-KP-LSPPSLKINKDSHLIRKSSSSSNTSSPSSSSSS 60

Query: 61  TTSLANGVAAAAAKPPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDHDHEAST 120
           TTSL NGV  A AKPP QRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRS  D EAST
Sbjct: 61  TTSLVNGVPTAVAKPP-QRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRS--DDEAST 120

Query: 121 TKLATTKSAVDENNNNNNNNNKGSKAAVVNDDNESSSVVTTDENCC-GGGGSGLMEVGQ 179
              AT KS VDE       NNK SK  VVNDDNESSSV+TTDENCC G G SG +E GQ
Sbjct: 121 K--ATAKS-VDE-------NNKISK--VVNDDNESSSVLTTDENCCNGSGSSGAVEGGQ 162

The following BLAST results are available for this feature:

BLAST of Cucsa.199120 vs. Swiss-Prot


Match Name	E-value	Identity	Description
VQ20_ARATH	2.7e-22	39.34	VQ motif-containing protein 20 OS=Arabidopsis thaliana GN=VQ20 PE=2 SV=1	[more]
NSRB_ARATH	2.0e-09	30.49	Nuclear speckle RNA-binding protein B OS=Arabidopsis thaliana GN=NSRB PE=2 SV=1	[more]
VQ8_ARATH	9.9e-09	36.04	VQ motif-containing protein 8, chloroplastic OS=Arabidopsis thaliana GN=VQ8 PE=2...	[more]
IRLA_DICDI	1.6e-06	32.48	Probable serine/threonine-protein kinase irlA OS=Dictyostelium discoideum GN=irl...	[more]
MKS1_ARATH	7.9e-06	27.45	Protein MKS1 OS=Arabidopsis thaliana GN=MKS1 PE=1 SV=2	[more]

BLAST of Cucsa.199120 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LPK7_CUCSA	5.4e-70	79.78	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G023620 PE=4 SV=1	[more]
A0A0A0LKA6_CUCSA	6.0e-61	78.21	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G350280 PE=4 SV=1	[more]
B9T1N8_RICCO	7.8e-37	53.22	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1158870 PE=4 SV=1	[more]
M5WRN8_PRUPE	1.3e-36	49.47	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa020153mg PE=4 SV=1	[more]
A0A067JBM1_JATCU	2.8e-34	58.78	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05897 PE=4 SV=1	[more]

BLAST of Cucsa.199120 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G18360.1	1.5e-23	39.34	VQ motif-containing protein	[more]
AT1G21326.1	5.1e-11	31.29	VQ motif-containing protein	[more]
AT1G21320.1	1.1e-10	30.49	nucleotide binding;nucleic acid binding	[more]
AT1G68450.1	5.6e-10	36.04	VQ motif-containing protein	[more]
AT3G18690.1	4.4e-07	27.45	MAP kinase substrate 1	[more]

BLAST of Cucsa.199120 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778664725\|ref\|XP_004138347.2\|	3.0e-74	96.64	PREDICTED: VQ motif-containing protein 20 [Cucumis sativus]	[more]
gi\|659107464\|ref\|XP_008453685.1\|	3.5e-70	85.25	PREDICTED: protein MKS1 [Cucumis melo]	[more]
gi\|700208729\|gb\|KGN63825.1\|	7.7e-70	79.78	hypothetical protein Csa_1G023620 [Cucumis sativus]	[more]
gi\|778674275\|ref\|XP_004143051.2\|	8.6e-61	78.21	PREDICTED: VQ motif-containing protein 20-like [Cucumis sativus]	[more]
gi\|659089521\|ref\|XP_008445554.1\|	1.4e-58	78.21	PREDICTED: integrator complex subunit 6 homolog [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008889	VQ

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.199120.1	Cucsa.199120.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008889	VQ	PFAM	PF05678	VQ	coord: 86..110 score: 2.7
None	No IPR available	PANTHER	PTHR33143	FAMILY NOT NAMED	coord: 30..55 score: 1.1E-37coord: 71..164 score: 1.1
None	No IPR available	PANTHER	PTHR33143:SF4	SUBFAMILY NOT NAMED	coord: 71..164 score: 1.1E-37coord: 30..55 score: 1.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.199120	Cla018970	Watermelon (97103) v1	cgywmB390
Cucsa.199120	Cla020404	Watermelon (97103) v1	cgywmB383
Cucsa.199120	Csa1G023620	Cucumber (Chinese Long) v2	cgycuB299
Cucsa.199120	Csa5G609750	Cucumber (Chinese Long) v2	cgycuB304
Cucsa.199120	MELO3C017312	Melon (DHL92) v3.5.1	cgymeB364
Cucsa.199120	ClCG05G022640	Watermelon (Charleston Gray)	cgywcgB365
Cucsa.199120	ClCG06G014760	Watermelon (Charleston Gray)	cgywcgB368
Cucsa.199120	CSPI01G03840	Wild cucumber (PI 183967)	cgycpiB310
Cucsa.199120	CmaCh11G002750	Cucurbita maxima (Rimu)	cgycmaB0577
Cucsa.199120	CmaCh18G010120	Cucurbita maxima (Rimu)	cgycmaB0590
Cucsa.199120	CmoCh18G010230	Cucurbita moschata (Rifu)	cgycmoB0589
Cucsa.199120	CmoCh11G002800	Cucurbita moschata (Rifu)	cgycmoB0578
Cucsa.199120	Lsi06G013280	Bottle gourd (USVL1VR-Ls)	cgylsiB342
Cucsa.199120	Cp4.1LG04g14070	Cucurbita pepo (Zucchini)	cgycpeB0564
Cucsa.199120	MELO3C017312.2	Melon (DHL92) v3.6.1	cgymedB359
Cucsa.199120	CsaV3_1G003880	Cucumber (Chinese Long) v3	cgycucB314
Cucsa.199120	CsaV3_5G034400	Cucumber (Chinese Long) v3	cgycucB320
Cucsa.199120	Cla97C05G104460	Watermelon (97103) v2	cgywmbB367
Cucsa.199120	Cla97C06G124290	Watermelon (97103) v2	cgywmbB370
Cucsa.199120	Bhi07G001095	Wax gourd	cgywgoB413
Cucsa.199120	Bhi01G002698	Wax gourd	cgywgoB407
Cucsa.199120	Carg09139	Silver-seed gourd	carcgyB0673

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cucsa.199120	Cucsa.283500	Cucumber (Gy14) v1	cgycgyB114

The following block(s) are covering this gene:

None