Csa1G023620 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G023620
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionProtein MKS1, putative; contains IPR008889 (VQ)
LocationChr1 : 2381813 .. 2382555 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTCCTCAACAACAGCAACAACAAATCCATGGAAAAATGGATAATCAGATCACCAACAATGGGAATAATAAACCAATATTGTGTCCACCGCCATTGAAGATCAATAAGGATTCTCATTTGATTCGAAAAACTTCCTCTTCTTCAAATACTTCTTCCCCTTCTTCCTCTTCATCTTCCACCACCTCTCTTGCCAATGGGGTCGCTGCTGCTGCTGCGAAGCCACCACCTCAACGACATCCGGTGATTATATACACACATTCTCCCAAAATCATTCATACACATCCTCGAGATTTCATGGCCTTGGTTCAAAAGCTAACCGGAATGTCTCGATCAGATCATGATCATGAAGCTTCTACCACGAAGCTGGCTACAACGAAATCCGCCGTGGATGAGAATAATAATAATAATAATAATACTAAAGCTGCTGTTGTAAAGCTGCTGTTGTGAATGATGATAATGAATCGTCGTCCGTTGTGACGACGGATGAAAATTGTTGCGGCGGCGGTGGAAGCGGTTTGATGGAAGTTGGTCAGGTTAATTCGTGTTTTGGACCGGCGATTTTTGAGCCGCCGCCACCTCCGCCACAACTGGCGAATTCTTACCTGACGAATATACCCATTTATACGCCGAATTCGACGGAGTTCTTGTGCACGAATCAACCAATTTTTAACTATGATGATTCTTTGCTTTTTGGTGGCAACAGATCAGTTAATGATTTCTGCGAATACAGTGAATTTTAG

mRNA sequence

ATGAGTCCTCAACAACAGCAACAACAAATCCATGGAAAAATGGATAATCAGATCACCAACAATGGGAATAATAAACCAATATTGTGTCCACCGCCATTGAAGATCAATAAGGATTCTCATTTGATTCGAAAAACTTCCTCTTCTTCAAATACTTCTTCCCCTTCTTCCTCTTCATCTTCCACCACCTCTCTTGCCAATGGGGTCGCTGCTGCTGCTGCGAAGCCACCACCTCAACGACATCCGGTGATTATATACACACATTCTCCCAAAATCATTCATACACATCCTCGAGATTTCATGGCCTTGGTTCAAAAGCTAACCGGAATCTGCTGTTGTAAAGCTGCTGTTGTGAATGATGATAATGAATCGTCGTCCGTTGTGACGACGGATGAAAATTGTTGCGGCGGCGGTGGAAGCGGTTTGATGGAAGTTGGTCAGGTTAATTCGTGTTTTGGACCGGCGATTTTTGAGCCGCCGCCACCTCCGCCACAACTGGCGAATTCTTACCTGACGAATATACCCATTTATACGCCGAATTCGACGGAGTTCTTGTGCACGAATCAACCAATTTTTAACTATGATGATTCTTTGCTTTTTGGTGGCAACAGATCAGTTAATGATTTCTGCGAATACAGTGAATTTTAG

Coding sequence (CDS)

ATGAGTCCTCAACAACAGCAACAACAAATCCATGGAAAAATGGATAATCAGATCACCAACAATGGGAATAATAAACCAATATTGTGTCCACCGCCATTGAAGATCAATAAGGATTCTCATTTGATTCGAAAAACTTCCTCTTCTTCAAATACTTCTTCCCCTTCTTCCTCTTCATCTTCCACCACCTCTCTTGCCAATGGGGTCGCTGCTGCTGCTGCGAAGCCACCACCTCAACGACATCCGGTGATTATATACACACATTCTCCCAAAATCATTCATACACATCCTCGAGATTTCATGGCCTTGGTTCAAAAGCTAACCGGAATCTGCTGTTGTAAAGCTGCTGTTGTGAATGATGATAATGAATCGTCGTCCGTTGTGACGACGGATGAAAATTGTTGCGGCGGCGGTGGAAGCGGTTTGATGGAAGTTGGTCAGGTTAATTCGTGTTTTGGACCGGCGATTTTTGAGCCGCCGCCACCTCCGCCACAACTGGCGAATTCTTACCTGACGAATATACCCATTTATACGCCGAATTCGACGGAGTTCTTGTGCACGAATCAACCAATTTTTAACTATGATGATTCTTTGCTTTTTGGTGGCAACAGATCAGTTAATGATTTCTGCGAATACAGTGAATTTTAG

Protein sequence

MSPQQQQQQIHGKMDNQITNNGNNKPILCPPPLKINKDSHLIRKTSSSSNTSSPSSSSSSTTSLANGVAAAAAKPPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGICCCKAAVVNDDNESSSVVTTDENCCGGGGSGLMEVGQVNSCFGPAIFEPPPPPPQLANSYLTNIPIYTPNSTEFLCTNQPIFNYDDSLLFGGNRSVNDFCEYSEF*
Homology
[Close]
BLAST of Csa1G023620 vs. Swiss-Prot
Match: VQ20_ARATH (VQ motif-containing protein 20 OS=Arabidopsis thaliana GN=VQ20 PE=2 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.0e-15
Identity = 58/142 (40.85%), Postives = 72/142 (50.70%), Query Frame = 1 

Query: 11  HGKMDNQITNNG---NNKPILCPPPLKINKDSHLIRKTSSSSNTSSPSSSSSSTTSLANG 70
           H K +    N+G      P   PP LK+NKDSH+I+K  S S+ SS              
Sbjct: 21  HPKREPNENNSGILYTPSPSPSPPTLKVNKDSHVIKKPPSPSSFSS-------------- 80

Query: 71  VAAAAAKPPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGICCCKAAVVNDDNESSSVV 130
               AAKP   RHPVIIYTH+P+IIHT+P+DFMALVQKLTG                 + 
Sbjct: 81  ----AAKP---RHPVIIYTHTPRIIHTNPKDFMALVQKLTG-----------------MT 122

Query: 131 TTDENCCGGGGSGLMEVGQVNS 150
            +DE+   GGG+ + + G V S
Sbjct: 141 HSDEDL--GGGNAMTDPGVVKS 122


HSP 2 Score: 62.4 bits (150), Expect = 7.0e-09
Identity = 40/106 (37.74%), Postives = 52/106 (49.06%), Query Frame = 1 

Query: 116 VVNDDNESSSVVTTDENCCGGGGSGLMEVGQVNSCF----------GPAIFEPPPPPPQL 175
           ++++D+ESSSV+TT+EN        + E GQVNS             P    PPPPPP +
Sbjct: 166 MISEDSESSSVITTEEN--------IGEHGQVNSSLPYSAVAIPPQPPPHPPPPPPPPSM 225

Query: 176 AN-------SYLTNIPIYTP--NSTEFLCTNQPIFNYDDSLLFGGN 203
            +       +YL   PI+ P   +  FLC NQP  N+DD L F  N
Sbjct: 226 YDAAGINYGAYLPTFPIFPPANPADNFLCGNQPFANFDDPLFFAPN 263

[Close]
BLAST of Csa1G023620 vs. Swiss-Prot
Match: VQ8_ARATH (VQ motif-containing protein 8, chloroplastic OS=Arabidopsis thaliana GN=VQ8 PE=2 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.5e-11
Identity = 51/151 (33.77%), Postives = 69/151 (45.70%), Query Frame = 1 

Query: 30  PPPLKINKDSHLIRKTSSSSNTSSPSSSSSSTTSLANGVAAAAAKPPPQRHPVIIYTHSP 89
           P  LK+  +SH I+KTSS  +   P   +S                     PVIIY HSP
Sbjct: 14  PSSLKLAGESHTIKKTSSCKSKPRPHGRAS---------------------PVIIYAHSP 73

Query: 90  KIIHTHPRDFMALVQKLTGICCCKAAVVNDDNESSSVVTTDENCCGGGGSGLMEVGQVNS 149
           K+IHT   DFMALVQ+LTG+      +  + +ESSS V T+E          + VG  N+
Sbjct: 74  KVIHTRAEDFMALVQRLTGL---DEIIRRNTSESSSSVVTEE----------VNVGDDNT 123

Query: 150 CFGPAIFEPPPPPPQLANSYLTNIPIYTPNS 181
                    P    +     LT++P++TP+S
Sbjct: 134 A-------APFSQDRTQRQKLTDMPLFTPSS 123

[Close]
BLAST of Csa1G023620 vs. Swiss-Prot
Match: NSRB_ARATH (Nuclear speckle RNA-binding protein B OS=Arabidopsis thaliana GN=NSRB PE=2 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.3e-07
Identity = 39/97 (40.21%), Postives = 51/97 (52.58%), Query Frame = 1 

Query: 14  MDNQITNN-GNNKPILCPPPLKINKDSH-LIRKTSSSSNTSSPSSSSSSTTSLANGVAAA 73
           MDN+   + GN  P   P PLK+  DSH +I+K   +     P    +           +
Sbjct: 1   MDNRSPRSRGNMGPK--PTPLKVRGDSHKIIKKPPLAPPHPQPQPPQTHQQE------PS 60

Query: 74  AAKPPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTG 109
            ++PPP   PV IYT +P+IIHTHP +FM LVQ+LTG
Sbjct: 61  QSRPPPG--PVNIYTVTPRIIHTHPNNFMTLVQRLTG 87

[Close]
BLAST of Csa1G023620 vs. TrEMBL
Match: A0A0A0LPK7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G023620 PE=4 SV=1)

HSP 1 Score: 449.1 bits (1154), Expect = 3.0e-123
Identity = 214/214 (100.00%), Postives = 214/214 (100.00%), Query Frame = 1 

Query: 1   MSPQQQQQQIHGKMDNQITNNGNNKPILCPPPLKINKDSHLIRKTSSSSNTSSPSSSSSS 60
           MSPQQQQQQIHGKMDNQITNNGNNKPILCPPPLKINKDSHLIRKTSSSSNTSSPSSSSSS
Sbjct: 1   MSPQQQQQQIHGKMDNQITNNGNNKPILCPPPLKINKDSHLIRKTSSSSNTSSPSSSSSS 60

Query: 61  TTSLANGVAAAAAKPPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGICCCKAAVVNDD 120
           TTSLANGVAAAAAKPPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGICCCKAAVVNDD
Sbjct: 61  TTSLANGVAAAAAKPPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGICCCKAAVVNDD 120

Query: 121 NESSSVVTTDENCCGGGGSGLMEVGQVNSCFGPAIFEPPPPPPQLANSYLTNIPIYTPNS 180
           NESSSVVTTDENCCGGGGSGLMEVGQVNSCFGPAIFEPPPPPPQLANSYLTNIPIYTPNS
Sbjct: 121 NESSSVVTTDENCCGGGGSGLMEVGQVNSCFGPAIFEPPPPPPQLANSYLTNIPIYTPNS 180

Query: 181 TEFLCTNQPIFNYDDSLLFGGNRSVNDFCEYSEF 215
           TEFLCTNQPIFNYDDSLLFGGNRSVNDFCEYSEF
Sbjct: 181 TEFLCTNQPIFNYDDSLLFGGNRSVNDFCEYSEF 214

[Close]
BLAST of Csa1G023620 vs. TrEMBL
Match: A0A0A0LKA6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G350280 PE=4 SV=1)

HSP 1 Score: 321.2 bits (822), Expect = 9.3e-85
Identity = 176/239 (73.64%), Postives = 185/239 (77.41%), Query Frame = 1 

Query: 1   MSPQQQQQQIHGKMDNQITNNGNNKPILCPPPLKINKDSHLIRKTSSSSNTSSPSSSSSS 60
           MSPQQQQQ IHGK DNQ TNN  NKP+  PP LKINKDSHLIRK+SSSSNTSSPSSSSSS
Sbjct: 1   MSPQQQQQ-IHGKRDNQ-TNNNANKPLSPPPLLKINKDSHLIRKSSSSSNTSSPSSSSSS 60

Query: 61  TTSLANGVAAAAAKPPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGI------CCCKA 120
           TTSL NGV   AA  PPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTG+         KA
Sbjct: 61  TTSLLNGVIPTAAAKPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDDEASTKA 120

Query: 121 A-------------VVNDDNESSSVVTTDENCCGG-GGSGLMEVGQVNSCFGPAIFE--P 180
                         VVNDDNESSSVVTTDENCCGG G SG +E GQVNSCFGPAIFE  P
Sbjct: 121 TAKSVVDENNKASKVVNDDNESSSVVTTDENCCGGSGSSGAVEGGQVNSCFGPAIFEPPP 180

Query: 181 PPPPPQLANSYLTNIPIYTPNSTEFLCTNQPIFNYDDSLLFGGN---RSVNDFCEYSEF 215
           PPPPPQLA+SYL+NIP+Y PNSTEFLC NQPIFNYDDSLLFG N    S N   ++SEF
Sbjct: 181 PPPPPQLASSYLSNIPVYGPNSTEFLCGNQPIFNYDDSLLFGSNIPSLSSNGVSDFSEF 237

[Close]
BLAST of Csa1G023620 vs. TrEMBL
Match: B9T1N8_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1158870 PE=4 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 4.4e-50
Identity = 115/225 (51.11%), Postives = 138/225 (61.33%), Query Frame = 1 

Query: 1   MSPQQQQQQIHGKMDNQITNNGNNKPILCPPPLKINKDSHLIRKTSSSSNTSSPSSSSSS 60
           MSP       H K +N  T+      +LCPPPLK++KDSH I+K+SSS+ +S PSSS S 
Sbjct: 1   MSPSPSFHDHHAKPNNNTTS------MLCPPPLKVSKDSHTIKKSSSSTLSSPPSSSCSF 60

Query: 61  TTSLANGVAAAAAKPPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGICCCK------- 120
           ++S ++   A  AKPP QRHPVIIYTHSPKIIHTHPRDFMALVQKLTG+           
Sbjct: 61  SSSASSLAVAGPAKPPQQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGLSHSSLDQAPRA 120

Query: 121 ------------------AAVVNDDNESSSVVTTDENCCGGGGSGLMEVGQVNSCFGPAI 180
                               V NDDNESSSV+T + NC   G +  +  GQVNSCF P I
Sbjct: 121 KQEEGKLSSEDENNKSRMKIVGNDDNESSSVITEENNC---GNNSSIGDGQVNSCFVPPI 180

Query: 181 FEPPPPPPQLANSYLTNIPIYTPNSTEFLCTNQPIF-NYDDSLLF 200
           FEPP       N Y+TNIP++TPNS +FLC NQP + NY DSL F
Sbjct: 181 FEPP-------NPYITNIPVFTPNSADFLCANQPFYNNYTDSLFF 209

[Close]
BLAST of Csa1G023620 vs. TrEMBL
Match: A0A067JBM1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05897 PE=4 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 2.0e-47
Identity = 114/205 (55.61%), Postives = 130/205 (63.41%), Query Frame = 1 

Query: 21  NGNNKPILCPPPLKINKDSHLIRKTSSSSNTSSPSSSSSSTTSLANGVAAAAAKPP-PQR 80
           N NN    CPPPLKINKDSH+I+K+SSSSN+S PSSSSSS+ S    V  A   P  PQR
Sbjct: 9   NNNN----CPPPLKINKDSHMIKKSSSSSNSSPPSSSSSSSASSLTVVGPAKLPPQGPQR 68

Query: 81  HPVIIYTHSPKIIHTHPRDFMALVQKLTGIC-------------------------CCKA 140
           HPVIIYTHSPKIIHT+P+DFM LVQKLTG+                              
Sbjct: 69  HPVIIYTHSPKIIHTNPKDFMQLVQKLTGLSRPEDDHPPRVKQEKSNSSQDEESKNVRSI 128

Query: 141 AVVNDDNESSSVVTTDENCCGGGGSGLMEVGQVNSCFGPAIFEPPPPPPQLANSYLTNIP 200
              NDDNESSSV+ T+ENC   GGS  +  GQVNSCF P IF+PP       N Y+TNIP
Sbjct: 129 GNGNDDNESSSVI-TEENC---GGS--IVDGQVNSCFAPPIFDPP-------NPYMTNIP 188

[Close]
BLAST of Csa1G023620 vs. TrEMBL
Match: A0A0D2QVS6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G112000 PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 3.7e-41
Identity = 108/230 (46.96%), Postives = 131/230 (56.96%), Query Frame = 1 

Query: 1   MSPQQQQQQIHGKMDNQITNNGNNKPILCPPPLKINKDSHLIRKTSSSSNTSSPSSSSSS 60
           M+P Q   Q         +N GN    +CPPPLK+++DSHLI+K+SSSS++SS +SS   
Sbjct: 1   MNPTQFHDQHRHAKKESTSNIGNGG--ICPPPLKVSRDSHLIKKSSSSSSSSSAASSLG- 60

Query: 61  TTSLANGVAAAAAKPPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGICCCK------- 120
                    +   KP  QRHPVIIYTHSPK+IHTHP+DFMALVQKLTG+   +       
Sbjct: 61  --------VSGPVKPQQQRHPVIIYTHSPKVIHTHPKDFMALVQKLTGLSRNEDDHQNHN 120

Query: 121 ------------AAVV--------NDDNESSSVVTTDENCCGGGGSGLMEVGQVNSCFGP 180
                       AA V        NDDNESSSV+ TDENC           GQVNSCF P
Sbjct: 121 NHGPHQPKAETGAASVEEDSKRINNDDNESSSVI-TDENC----------EGQVNSCFVP 180

Query: 181 AIFEPPPPPPQLANSYLTNIPIYTPNSTEFLCTN-QPIFNYDDSLLFGGN 203
            +F+PP  P         NIP++TPNST+FLC N QP +NY DSL F  N
Sbjct: 181 PLFDPPAAP-------FLNIPVFTPNSTDFLCVNHQPFYNYTDSLFFTPN 201

[Close]
BLAST of Csa1G023620 vs. TAIR10
Match: AT3G18360.1 (AT3G18360.1 VQ motif-containing protein)

HSP 1 Score: 85.1 bits (209), Expect = 5.7e-17
Identity = 58/142 (40.85%), Postives = 72/142 (50.70%), Query Frame = 1 

Query: 11  HGKMDNQITNNG---NNKPILCPPPLKINKDSHLIRKTSSSSNTSSPSSSSSSTTSLANG 70
           H K +    N+G      P   PP LK+NKDSH+I+K  S S+ SS              
Sbjct: 21  HPKREPNENNSGILYTPSPSPSPPTLKVNKDSHVIKKPPSPSSFSS-------------- 80

Query: 71  VAAAAAKPPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGICCCKAAVVNDDNESSSVV 130
               AAKP   RHPVIIYTH+P+IIHT+P+DFMALVQKLTG                 + 
Sbjct: 81  ----AAKP---RHPVIIYTHTPRIIHTNPKDFMALVQKLTG-----------------MT 122

Query: 131 TTDENCCGGGGSGLMEVGQVNS 150
            +DE+   GGG+ + + G V S
Sbjct: 141 HSDEDL--GGGNAMTDPGVVKS 122


HSP 2 Score: 62.4 bits (150), Expect = 4.0e-10
Identity = 40/106 (37.74%), Postives = 52/106 (49.06%), Query Frame = 1 

Query: 116 VVNDDNESSSVVTTDENCCGGGGSGLMEVGQVNSCF----------GPAIFEPPPPPPQL 175
           ++++D+ESSSV+TT+EN        + E GQVNS             P    PPPPPP +
Sbjct: 166 MISEDSESSSVITTEEN--------IGEHGQVNSSLPYSAVAIPPQPPPHPPPPPPPPSM 225

Query: 176 AN-------SYLTNIPIYTP--NSTEFLCTNQPIFNYDDSLLFGGN 203
            +       +YL   PI+ P   +  FLC NQP  N+DD L F  N
Sbjct: 226 YDAAGINYGAYLPTFPIFPPANPADNFLCGNQPFANFDDPLFFAPN 263

[Close]
BLAST of Csa1G023620 vs. TAIR10
Match: AT1G68450.1 (AT1G68450.1 VQ motif-containing protein)

HSP 1 Score: 71.2 bits (173), Expect = 8.5e-13
Identity = 51/151 (33.77%), Postives = 69/151 (45.70%), Query Frame = 1 

Query: 30  PPPLKINKDSHLIRKTSSSSNTSSPSSSSSSTTSLANGVAAAAAKPPPQRHPVIIYTHSP 89
           P  LK+  +SH I+KTSS  +   P   +S                     PVIIY HSP
Sbjct: 14  PSSLKLAGESHTIKKTSSCKSKPRPHGRAS---------------------PVIIYAHSP 73

Query: 90  KIIHTHPRDFMALVQKLTGICCCKAAVVNDDNESSSVVTTDENCCGGGGSGLMEVGQVNS 149
           K+IHT   DFMALVQ+LTG+      +  + +ESSS V T+E          + VG  N+
Sbjct: 74  KVIHTRAEDFMALVQRLTGL---DEIIRRNTSESSSSVVTEE----------VNVGDDNT 123

Query: 150 CFGPAIFEPPPPPPQLANSYLTNIPIYTPNS 181
                    P    +     LT++P++TP+S
Sbjct: 134 A-------APFSQDRTQRQKLTDMPLFTPSS 123

[Close]
BLAST of Csa1G023620 vs. TAIR10
Match: AT1G21326.1 (AT1G21326.1 VQ motif-containing protein)

HSP 1 Score: 60.1 bits (144), Expect = 2.0e-09
Identity = 35/80 (43.75%), Postives = 44/80 (55.00%), Query Frame = 1 

Query: 30  PPPLKINKDSH-LIRKTSSSSNTSSPSSSSSSTTSLANGVAAAAAKPPPQRHPVIIYTHS 89
           P PLK+  DSH +I+K   +     P    +           + ++PPP   PVIIYT S
Sbjct: 16  PIPLKVRGDSHKIIKKPPLAPPHPQPQPPQTHQQE------PSQSRPPPG--PVIIYTVS 75

Query: 90  PKIIHTHPRDFMALVQKLTG 109
           P+IIHTHP +FM LVQ+LTG
Sbjct: 76  PRIIHTHPNNFMTLVQRLTG 87

[Close]
BLAST of Csa1G023620 vs. TAIR10
Match: AT1G21320.1 (AT1G21320.1 nucleotide binding;nucleic acid binding)

HSP 1 Score: 58.2 bits (139), Expect = 7.5e-09
Identity = 39/97 (40.21%), Postives = 51/97 (52.58%), Query Frame = 1 

Query: 14  MDNQITNN-GNNKPILCPPPLKINKDSH-LIRKTSSSSNTSSPSSSSSSTTSLANGVAAA 73
           MDN+   + GN  P   P PLK+  DSH +I+K   +     P    +           +
Sbjct: 1   MDNRSPRSRGNMGPK--PTPLKVRGDSHKIIKKPPLAPPHPQPQPPQTHQQE------PS 60

Query: 74  AAKPPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTG 109
            ++PPP   PV IYT +P+IIHTHP +FM LVQ+LTG
Sbjct: 61  QSRPPPG--PVNIYTVTPRIIHTHPNNFMTLVQRLTG 87

[Close]
BLAST of Csa1G023620 vs. TAIR10
Match: AT3G18690.1 (AT3G18690.1 MAP kinase substrate 1)

HSP 1 Score: 51.2 bits (121), Expect = 9.1e-07
Identity = 30/82 (36.59%), Postives = 41/82 (50.00%), Query Frame = 1 

Query: 30  PPPLKINKDSHLIRKTSSSSNTSSPSSSSSSTTSLANGVAAAAAKPPPQ--RHPVIIYTH 89
           P PL ++KDSH I+K     + + P +                 +PPP   R PV+IY  
Sbjct: 29  PSPLSVHKDSHKIKKPPK--HPAPPPNRD---------------QPPPYIPREPVVIYAV 88

Query: 90  SPKIIHTHPRDFMALVQKLTGI 110
           SPK++H    +FM +VQ+LTGI
Sbjct: 89  SPKVVHATASEFMNVVQRLTGI 93

[Close]
BLAST of Csa1G023620 vs. NCBI nr
Match: gi|700208729|gb|KGN63825.1| (hypothetical protein Csa_1G023620 [Cucumis sativus])

HSP 1 Score: 449.1 bits (1154), Expect = 4.3e-123
Identity = 214/214 (100.00%), Postives = 214/214 (100.00%), Query Frame = 1 

Query: 1   MSPQQQQQQIHGKMDNQITNNGNNKPILCPPPLKINKDSHLIRKTSSSSNTSSPSSSSSS 60
           MSPQQQQQQIHGKMDNQITNNGNNKPILCPPPLKINKDSHLIRKTSSSSNTSSPSSSSSS
Sbjct: 1   MSPQQQQQQIHGKMDNQITNNGNNKPILCPPPLKINKDSHLIRKTSSSSNTSSPSSSSSS 60

Query: 61  TTSLANGVAAAAAKPPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGICCCKAAVVNDD 120
           TTSLANGVAAAAAKPPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGICCCKAAVVNDD
Sbjct: 61  TTSLANGVAAAAAKPPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGICCCKAAVVNDD 120

Query: 121 NESSSVVTTDENCCGGGGSGLMEVGQVNSCFGPAIFEPPPPPPQLANSYLTNIPIYTPNS 180
           NESSSVVTTDENCCGGGGSGLMEVGQVNSCFGPAIFEPPPPPPQLANSYLTNIPIYTPNS
Sbjct: 121 NESSSVVTTDENCCGGGGSGLMEVGQVNSCFGPAIFEPPPPPPQLANSYLTNIPIYTPNS 180

Query: 181 TEFLCTNQPIFNYDDSLLFGGNRSVNDFCEYSEF 215
           TEFLCTNQPIFNYDDSLLFGGNRSVNDFCEYSEF
Sbjct: 181 TEFLCTNQPIFNYDDSLLFGGNRSVNDFCEYSEF 214

[Close]
BLAST of Csa1G023620 vs. NCBI nr
Match: gi|659107464|ref|XP_008453685.1| (PREDICTED: protein MKS1 [Cucumis melo])

HSP 1 Score: 350.5 bits (898), Expect = 2.1e-93
Identity = 190/248 (76.61%), Postives = 194/248 (78.23%), Query Frame = 1 

Query: 1   MSPQQQQQQIHGKMDNQITNNGNNKPILCPPPLKINKDSHLIRKTSSSSN--TSSPSSSS 60
           MSPQQQ   IHGK DNQI NNGN KPILCPPPLKINKDSHLIRKTSSSSN  TSSPSSSS
Sbjct: 1   MSPQQQ---IHGKRDNQINNNGN-KPILCPPPLKINKDSHLIRKTSSSSNNTTSSPSSSS 60

Query: 61  SSTTSLANGVAAAAAKP--PPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGICCC---- 120
           SSTTSL NGVAAAAA    P QRHPVIIYTHSPK+IHTHPRDFMALVQKLTG+       
Sbjct: 61  SSTTSLVNGVAAAAAAAAKPLQRHPVIIYTHSPKVIHTHPRDFMALVQKLTGMSRSDDHE 120

Query: 121 ---------------------KAAVVNDDNESSSVVTTDENCC-GGGGSGLMEVGQVNSC 180
                                  AVV+DDNESSSVVTTDENCC GGGGSG+MEVGQVNSC
Sbjct: 121 ASTKLATTKPVVDENNNNNKGSKAVVSDDNESSSVVTTDENCCGGGGGSGMMEVGQVNSC 180

Query: 181 FGPAIFEPP-----PPPPQLANSYLTNIPIYTPNSTEFLCTNQPIFNYDDSLLFGGNRSV 214
           FGP IFEPP     PPPPQLANSYLTNIPIYTPNS EFLC NQPIFNYDDSLLFGGNR V
Sbjct: 181 FGPVIFEPPPPPPSPPPPQLANSYLTNIPIYTPNSMEFLCANQPIFNYDDSLLFGGNRVV 240

[Close]
BLAST of Csa1G023620 vs. NCBI nr
Match: gi|778674275|ref|XP_004143051.2| (PREDICTED: VQ motif-containing protein 20-like [Cucumis sativus])

HSP 1 Score: 321.2 bits (822), Expect = 1.3e-84
Identity = 176/239 (73.64%), Postives = 185/239 (77.41%), Query Frame = 1 

Query: 1   MSPQQQQQQIHGKMDNQITNNGNNKPILCPPPLKINKDSHLIRKTSSSSNTSSPSSSSSS 60
           MSPQQQQQ IHGK DNQ TNN  NKP+  PP LKINKDSHLIRK+SSSSNTSSPSSSSSS
Sbjct: 1   MSPQQQQQ-IHGKRDNQ-TNNNANKPLSPPPLLKINKDSHLIRKSSSSSNTSSPSSSSSS 60

Query: 61  TTSLANGVAAAAAKPPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGI------CCCKA 120
           TTSL NGV   AA  PPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTG+         KA
Sbjct: 61  TTSLLNGVIPTAAAKPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDDEASTKA 120

Query: 121 A-------------VVNDDNESSSVVTTDENCCGG-GGSGLMEVGQVNSCFGPAIFE--P 180
                         VVNDDNESSSVVTTDENCCGG G SG +E GQVNSCFGPAIFE  P
Sbjct: 121 TAKSVVDENNKASKVVNDDNESSSVVTTDENCCGGSGSSGAVEGGQVNSCFGPAIFEPPP 180

Query: 181 PPPPPQLANSYLTNIPIYTPNSTEFLCTNQPIFNYDDSLLFGGN---RSVNDFCEYSEF 215
           PPPPPQLA+SYL+NIP+Y PNSTEFLC NQPIFNYDDSLLFG N    S N   ++SEF
Sbjct: 181 PPPPPQLASSYLSNIPVYGPNSTEFLCGNQPIFNYDDSLLFGSNIPSLSSNGVSDFSEF 237

[Close]
BLAST of Csa1G023620 vs. NCBI nr
Match: gi|659089521|ref|XP_008445554.1| (PREDICTED: integrator complex subunit 6 homolog [Cucumis melo])

HSP 1 Score: 320.9 bits (821), Expect = 1.7e-84
Identity = 176/241 (73.03%), Postives = 185/241 (76.76%), Query Frame = 1 

Query: 1   MSPQQQQQQIHGKMDNQITNNGNNKPILCPPPLKINKDSHLIRKTSSSSNTSSPSSSSSS 60
           MSPQ QQQQIHGK DNQI NN N KP L PP LKINKDSHLIRK+SSSSNTSSPSSSSSS
Sbjct: 1   MSPQHQQQQIHGKRDNQINNNAN-KP-LSPPSLKINKDSHLIRKSSSSSNTSSPSSSSSS 60

Query: 61  TTSLANGVAAAAAKPPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGI------CCCKA 120
           TTSL NGV  A AKPP QRHPVIIYTHSPKIIHTHPRDFMALVQKLTG+         KA
Sbjct: 61  TTSLVNGVPTAVAKPP-QRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDDEASTKA 120

Query: 121 A------------VVNDDNESSSVVTTDENCCGGGGS-GLMEVGQVNSCFGPAIFE---- 180
                        VVNDDNESSSV+TTDENCC G GS G +E GQVNSCFGPA FE    
Sbjct: 121 TAKSVDENNKISKVVNDDNESSSVLTTDENCCNGSGSSGAVEGGQVNSCFGPASFEPPPP 180

Query: 181 PPPPPPQLANSYLTNIPIYTPNSTEFLCTNQPIFNYDDSLLFGGNR----SVNDFCEYSE 215
           PPPPPPQLANSYLTN+P+Y PNSTEFLC NQPIFNYDDSLLFGG+     S N   ++SE
Sbjct: 181 PPPPPPQLANSYLTNMPVYGPNSTEFLCGNQPIFNYDDSLLFGGSNIPSLSSNGISDFSE 238

[Close]
BLAST of Csa1G023620 vs. NCBI nr
Match: gi|778664725|ref|XP_004138347.2| (PREDICTED: VQ motif-containing protein 20 [Cucumis sativus])

HSP 1 Score: 221.9 bits (564), Expect = 1.1e-54
Identity = 108/109 (99.08%), Postives = 109/109 (100.00%), Query Frame = 1 

Query: 1   MSPQQQQQQIHGKMDNQITNNGNNKPILCPPPLKINKDSHLIRKTSSSSNTSSPSSSSSS 60
           MSPQQQQQQIHGKMDNQITNNGNNKPILCPPPLKINKDSHLIRKTSSSSNTSSPSSSSSS
Sbjct: 1   MSPQQQQQQIHGKMDNQITNNGNNKPILCPPPLKINKDSHLIRKTSSSSNTSSPSSSSSS 60

Query: 61  TTSLANGVAAAAAKPPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGI 110
           TTSLANGVAAAAAKPPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTG+
Sbjct: 61  TTSLANGVAAAAAKPPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGM 109

The following BLAST results are available for this feature:
BLAST of Csa1G023620 vs. Swiss-Prot
Match NameE-valueIdentityDescription
VQ20_ARATH1.0e-1540.85VQ motif-containing protein 20 OS=Arabidopsis thaliana GN=VQ20 PE=2 SV=1[more]
VQ8_ARATH1.5e-1133.77VQ motif-containing protein 8, chloroplastic OS=Arabidopsis thaliana GN=VQ8 PE=2... [more]
NSRB_ARATH1.3e-0740.21Nuclear speckle RNA-binding protein B OS=Arabidopsis thaliana GN=NSRB PE=2 SV=1[more]
BLAST of Csa1G023620 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LPK7_CUCSA3.0e-123100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G023620 PE=4 SV=1[more]
A0A0A0LKA6_CUCSA9.3e-8573.64Uncharacterized protein OS=Cucumis sativus GN=Csa_2G350280 PE=4 SV=1[more]
B9T1N8_RICCO4.4e-5051.11Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1158870 PE=4 SV=1[more]
A0A067JBM1_JATCU2.0e-4755.61Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05897 PE=4 SV=1[more]
A0A0D2QVS6_GOSRA3.7e-4146.96Uncharacterized protein OS=Gossypium raimondii GN=B456_004G112000 PE=4 SV=1[more]
BLAST of Csa1G023620 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G18360.15.7e-1740.85 VQ motif-containing protein[more]
AT1G68450.18.5e-1333.77 VQ motif-containing protein[more]
AT1G21326.12.0e-0943.75 VQ motif-containing protein[more]
AT1G21320.17.5e-0940.21 nucleotide binding;nucleic acid binding[more]
AT3G18690.19.1e-0736.59 MAP kinase substrate 1[more]
BLAST of Csa1G023620 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700208729|gb|KGN63825.1|4.3e-123100.00hypothetical protein Csa_1G023620 [Cucumis sativus][more]
gi|659107464|ref|XP_008453685.1|2.1e-9376.61PREDICTED: protein MKS1 [Cucumis melo][more]
gi|778674275|ref|XP_004143051.2|1.3e-8473.64PREDICTED: VQ motif-containing protein 20-like [Cucumis sativus][more]
gi|659089521|ref|XP_008445554.1|1.7e-8473.03PREDICTED: integrator complex subunit 6 homolog [Cucumis melo][more]
gi|778664725|ref|XP_004138347.2|1.1e-5499.08PREDICTED: VQ motif-containing protein 20 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008889VQ
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G023620.1Csa1G023620.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008889VQPFAMPF05678VQcoord: 86..109
score: 7.2
NoneNo IPR availablePANTHERPTHR33143FAMILY NOT NAMEDcoord: 71..200
score: 4.1E-40coord: 30..55
score: 4.1
NoneNo IPR availablePANTHERPTHR33143:SF4SUBFAMILY NOT NAMEDcoord: 71..200
score: 4.1E-40coord: 30..55
score: 4.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa1G023620Cla018970Watermelon (97103) v1cuwmB095
Csa1G023620Cla020404Watermelon (97103) v1cuwmB039
Csa1G023620MELO3C017312Melon (DHL92) v3.5.1cumeB055
Csa1G023620ClCG06G014760Watermelon (Charleston Gray)cuwcgB082
Csa1G023620ClCG05G022640Watermelon (Charleston Gray)cuwcgB063
Csa1G023620Lsi06G013280Bottle gourd (USVL1VR-Ls)culsiB071
Csa1G023620MELO3C017312.2Melon (DHL92) v3.6.1cumedB047
Csa1G023620Cla97C05G104460Watermelon (97103) v2cuwmbB061
Csa1G023620Cla97C06G124290Watermelon (97103) v2cuwmbB079
Csa1G023620Bhi07G001095Wax gourdcuwgoB071
Csa1G023620Bhi01G002698Wax gourdcuwgoB012
Csa1G023620CSPI01G03840Wild cucumber (PI 183967)cpicuB000
Csa1G023620Cucsa.283500Cucumber (Gy14) v1cgycuB405
Csa1G023620Cucsa.199120Cucumber (Gy14) v1cgycuB299
Csa1G023620CmaCh18G010120Cucurbita maxima (Rimu)cmacuB404
Csa1G023620CmaCh11G002750Cucurbita maxima (Rimu)cmacuB087
Csa1G023620CmoCh18G010230Cucurbita moschata (Rifu)cmocuB389
Csa1G023620CmoCh11G002800Cucurbita moschata (Rifu)cmocuB076
Csa1G023620Cp4.1LG04g14070Cucurbita pepo (Zucchini)cpecuB654
Csa1G023620CsGy1G003780Cucumber (Gy14) v2cgybcuB001
Csa1G023620CsGy5G024810Cucumber (Gy14) v2cgybcuB196
Csa1G023620Carg09139Silver-seed gourdcarcuB0622
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Csa1G023620Csa5G609750Cucumber (Chinese Long) v2cucuB030
The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G023620Wax gourdcuwgoB040
Csa1G023620Cucumber (Chinese Long) v2cucuB000
Csa1G023620Cucumber (Gy14) v1cgycuB160
Csa1G023620Cucurbita maxima (Rimu)cmacuB061
Csa1G023620Cucurbita maxima (Rimu)cmacuB221
Csa1G023620Cucurbita maxima (Rimu)cmacuB393
Csa1G023620Cucurbita maxima (Rimu)cmacuB686
Csa1G023620Cucurbita moschata (Rifu)cmocuB050
Csa1G023620Cucurbita moschata (Rifu)cmocuB207
Csa1G023620Cucurbita moschata (Rifu)cmocuB679
Csa1G023620Melon (DHL92) v3.5.1cumeB010
Csa1G023620Melon (DHL92) v3.5.1cumeB033
Csa1G023620Watermelon (Charleston Gray)cuwcgB058
Csa1G023620Watermelon (97103) v1cuwmB063
Csa1G023620Cucurbita pepo (Zucchini)cpecuB024
Csa1G023620Cucurbita pepo (Zucchini)cpecuB031
Csa1G023620Cucurbita pepo (Zucchini)cpecuB352
Csa1G023620Cucurbita pepo (Zucchini)cpecuB381
Csa1G023620Cucurbita pepo (Zucchini)cpecuB509
Csa1G023620Bottle gourd (USVL1VR-Ls)culsiB025
Csa1G023620Bottle gourd (USVL1VR-Ls)culsiB054
Csa1G023620Cucumber (Gy14) v2cgybcuB005
Csa1G023620Melon (DHL92) v3.6.1cumedB005
Csa1G023620Melon (DHL92) v3.6.1cumedB028
Csa1G023620Silver-seed gourdcarcuB0416
Csa1G023620Silver-seed gourdcarcuB0491
Csa1G023620Silver-seed gourdcarcuB0543
Csa1G023620Silver-seed gourdcarcuB0856
Csa1G023620Watermelon (97103) v2cuwmbB055