Cucsa.178830 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.178830
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionLOB domain protein 6
Locationscaffold01227 : 1198570 .. 1199241 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AGGAGGAATTGGAAGATGGCTTCGAGTTCCTCGAATTCGCCCTGTGCAGCCTGCAAATTTCTCCGGCGAAAATGCCAGCCGGAATGTGTTTTTGCGCCGTATTTTCCACCGGATCAGCCTCAGAAATTCGCAAATGTTCACAAGGTATTCGGAGCTAGTAATGTAACAAAACTTCTCAACGAATTACATCCTCACCAGAGAGAAGACGCTGTCAATTCCCTCGCTTACGAAGCCGATATGCGCCTTCGTGACCCTGTCTACGGCTGTGTTGGCGTAATTTCTCTGCTTCAACACCAACTCTGTAAACTCCAAATGGATCTCACTTGCGCAAAATCTGAACTCTCCAAATATCAAAACTTAGGGATTGGTAACCACGCTACCCTGATTTCGCCGCCTTCCACCCTTTCTACCGTCCCTCATGGACAGAGAAACCACCAGCCGGCGTTCAATTTCGCTCGAGATCAACCGCATAGTCTTTATCACGACCAATTTTTCCCTCGAGATCAACAACAACCACAGATGATGCTACGACGGAACTTCGACGGCGGTAGCAACTACGACGGACTTTTGGCCGTTAATGTCACCGCAAGTATCGGTAACCTCAGCCACCAGTTCCAGCAAACTCGCGCCGCCGCCGGAGACGATCGTCGCGGTACTCTCGATCATTCTTAG

mRNA sequence

AGGAGGAATTGGAAGATGGCTTCGAGTTCCTCGAATTCGCCCTGTGCAGCCTGCAAATTTCTCCGGCGAAAATGCCAGCCGGAATGTGTTTTTGCGCCGTATTTTCCACCGGATCAGCCTCAGAAATTCGCAAATGTTCACAAGGTATTCGGAGCTAGTAATGTAACAAAACTTCTCAACGAATTACATCCTCACCAGAGAGAAGACGCTGTCAATTCCCTCGCTTACGAAGCCGATATGCGCCTTCGTGACCCTGTCTACGGCTGTGTTGGCGTAATTTCTCTGCTTCAACACCAACTCTGTAAACTCCAAATGGATCTCACTTGCGCAAAATCTGAACTCTCCAAATATCAAAACTTAGGGATTGGTAACCACGCTACCCTGATTTCGCCGCCTTCCACCCTTTCTACCGTCCCTCATGGACAGAGAAACCACCAGCCGGCGTTCAATTTCGCTCGAGATCAACCGCATAGTCTTTATCACGACCAATTTTTCCCTCGAGATCAACAACAACCACAGATGATGCTACGACGGAACTTCGACGGCGGTAGCAACTACGACGGACTTTTGGCCGTTAATGTCACCGCAAGTATCGGTAACCTCAGCCACCAGTTCCAGCAAACTCGCGCCGCCGCCGGAGACGATCGTCGCGGTACTCTCGATCATTCTTAG

Coding sequence (CDS)

AGGAGGAATTGGAAGATGGCTTCGAGTTCCTCGAATTCGCCCTGTGCAGCCTGCAAATTTCTCCGGCGAAAATGCCAGCCGGAATGTGTTTTTGCGCCGTATTTTCCACCGGATCAGCCTCAGAAATTCGCAAATGTTCACAAGGTATTCGGAGCTAGTAATGTAACAAAACTTCTCAACGAATTACATCCTCACCAGAGAGAAGACGCTGTCAATTCCCTCGCTTACGAAGCCGATATGCGCCTTCGTGACCCTGTCTACGGCTGTGTTGGCGTAATTTCTCTGCTTCAACACCAACTCTGTAAACTCCAAATGGATCTCACTTGCGCAAAATCTGAACTCTCCAAATATCAAAACTTAGGGATTGGTAACCACGCTACCCTGATTTCGCCGCCTTCCACCCTTTCTACCGTCCCTCATGGACAGAGAAACCACCAGCCGGCGTTCAATTTCGCTCGAGATCAACCGCATAGTCTTTATCACGACCAATTTTTCCCTCGAGATCAACAACAACCACAGATGATGCTACGACGGAACTTCGACGGCGGTAGCAACTACGACGGACTTTTGGCCGTTAATGTCACCGCAAGTATCGGTAACCTCAGCCACCAGTTCCAGCAAACTCGCGCCGCCGCCGGAGACGATCGTCGCGGTACTCTCGATCATTCTTAG

Protein sequence

RRNWKMASSSSNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPHQREDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLCKLQMDLTCAKSELSKYQNLGIGNHATLISPPSTLSTVPHGQRNHQPAFNFARDQPHSLYHDQFFPRDQQQPQMMLRRNFDGGSNYDGLLAVNVTASIGNLSHQFQQTRAAAGDDRRGTLDHS*
Homology
[Close]
BLAST of Cucsa.178830 vs. Swiss-Prot
Match: LBD6_ARATH (LOB domain-containing protein 6 OS=Arabidopsis thaliana GN=LBD6 PE=1 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 2.4e-68
Identity = 147/220 (66.82%), Postives = 163/220 (74.09%), Query Frame = 1 

Query: 6   MASSSSNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPH 65
           MASSS+NSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHP 
Sbjct: 1   MASSSTNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPS 60

Query: 66  QREDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLCKLQMDLTCAKSELSKYQNLGI--G 125
           QREDAVNSLAYEADMRLRDPVYGCVGVISLLQHQL +LQ+DL+CAKSELSKYQ+LGI   
Sbjct: 61  QREDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLRQLQIDLSCAKSELSKYQSLGILAA 120

Query: 126 NHATLISPPSTLSTVPHGQRNHQPAFNFARDQPHSLYHDQFFPRDQQQPQMMLRRNFDGG 185
            H +L    + L+    G           RD  H   H QFFPR+    QM    +   G
Sbjct: 121 THQSL--GINLLAGAADG------TATAVRDHYH---HHQFFPRE----QMFGGLDVPAG 180

Query: 186 SNYDGLLAVNVTASIGNLSHQFQQTRAAAGDDRRGTLDHS 224
           +NYDG +      +IG ++ QFQQ RAAAGDD R T+D S
Sbjct: 181 NNYDGGI-----LAIGQIT-QFQQPRAAAGDDGRRTVDPS 199

[Close]
BLAST of Cucsa.178830 vs. Swiss-Prot
Match: LBD6_MAIZE (LOB domain-containing protein 6 OS=Zea mays GN=LBD6 PE=1 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 2.7e-51
Identity = 108/187 (57.75%), Postives = 125/187 (66.84%), Query Frame = 1 

Query: 7   ASSSSNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPHQ 66
           A   + SPCAACKFLRRKCQP+CVFAPYFPPD PQKF +VH+VFGASNVTKLLNELHP Q
Sbjct: 26  AVCGTGSPCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPFQ 85

Query: 67  REDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLCKLQMDLTCAKSELSKYQNLGIGNHA 126
           REDAVNSLAYEADMRLRDPVYGCVGVIS+LQH L +LQ DL  AK ELSKYQ     + +
Sbjct: 86  REDAVNSLAYEADMRLRDPVYGCVGVISILQHNLRQLQQDLARAKYELSKYQAAAAASAS 145

Query: 127 TLISPPSTL-----STVPHGQRN-----HQPAFNFARDQPHSLYHDQFFPRDQQQPQMML 184
           T  + P  +     + +P+G  N     H  A                F ++Q     ML
Sbjct: 146 TAPTGPQAMAEFIGNAMPNGAHNFINIGHSAALGSLGGSA------SVFGQEQFGNAQML 205

[Close]
BLAST of Cucsa.178830 vs. Swiss-Prot
Match: IAL1_MAIZE (Protein IAL1 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 2.5e-49
Identity = 103/184 (55.98%), Postives = 123/184 (66.85%), Query Frame = 1 

Query: 11  SNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPHQREDA 70
           + SPCAACKFLRRKCQP+CVFAPYFPPD PQKF  VH+VFGASNVTKL+NE+HP QREDA
Sbjct: 30  TGSPCAACKFLRRKCQPDCVFAPYFPPDNPQKFVRVHRVFGASNVTKLMNEIHPLQREDA 89

Query: 71  VNSLAYEADMRLRDPVYGCVGVISLLQHQLCKLQMDLTCAKSELSKYQNLGIGNHATLIS 130
           +NSLAYEADMR+RDPVYGCVGVIS+LQH L +LQ DL  AK ELSKYQ     + +T  +
Sbjct: 90  MNSLAYEADMRIRDPVYGCVGVISILQHNLRQLQQDLARAKYELSKYQAAAAASASTAPT 149

Query: 131 PPSTL-----STVPHGQRN------HQPAFNFARDQPHSLYHDQFFPRDQQQPQMMLRRN 184
            P  +     S +P+G  +      H  A              + F  + Q    ML R+
Sbjct: 150 GPQAMAEFIGSAMPNGAAHNFINLGHSAALGSLGGSTAMFGQQEQFGSNAQ----MLSRS 209

[Close]
BLAST of Cucsa.178830 vs. Swiss-Prot
Match: LBD6_ORYSI (LOB domain-containing protein 6 OS=Oryza sativa subsp. indica GN=LBD6 PE=3 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 4.7e-48
Identity = 90/112 (80.36%), Postives = 99/112 (88.39%), Query Frame = 1 

Query: 7   ASSSSNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPHQ 66
           A+  + SPCAACKFLRRKCQP+CVFAPYFPPD PQKF +VH+VFGASNVTKLLNELHP+Q
Sbjct: 31  AACGTGSPCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPYQ 90

Query: 67  REDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLCKLQMDLTCAKSELSKYQ 119
           REDAVNSLAYEADMRLRDPVYGCV +IS+LQ  L +LQ DL  AK ELSKYQ
Sbjct: 91  REDAVNSLAYEADMRLRDPVYGCVAIISILQRNLRQLQQDLARAKFELSKYQ 142

[Close]
BLAST of Cucsa.178830 vs. Swiss-Prot
Match: LBD6_ORYSJ (LOB domain-containing protein 6 OS=Oryza sativa subsp. japonica GN=LBD6 PE=2 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 4.7e-48
Identity = 90/112 (80.36%), Postives = 99/112 (88.39%), Query Frame = 1 

Query: 7   ASSSSNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPHQ 66
           A+  + SPCAACKFLRRKCQP+CVFAPYFPPD PQKF +VH+VFGASNVTKLLNELHP+Q
Sbjct: 31  AACGTGSPCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPYQ 90

Query: 67  REDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLCKLQMDLTCAKSELSKYQ 119
           REDAVNSLAYEADMRLRDPVYGCV +IS+LQ  L +LQ DL  AK ELSKYQ
Sbjct: 91  REDAVNSLAYEADMRLRDPVYGCVAIISILQRNLRQLQQDLARAKFELSKYQ 142

[Close]
BLAST of Cucsa.178830 vs. TrEMBL
Match: A0A0A0LML7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G070920 PE=4 SV=1)

HSP 1 Score: 455.3 bits (1170), Expect = 4.3e-125
Identity = 218/218 (100.00%), Postives = 218/218 (100.00%), Query Frame = 1 

Query: 6   MASSSSNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPH 65
           MASSSSNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPH
Sbjct: 1   MASSSSNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPH 60

Query: 66  QREDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLCKLQMDLTCAKSELSKYQNLGIGNH 125
           QREDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLCKLQMDLTCAKSELSKYQNLGIGNH
Sbjct: 61  QREDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLCKLQMDLTCAKSELSKYQNLGIGNH 120

Query: 126 ATLISPPSTLSTVPHGQRNHQPAFNFARDQPHSLYHDQFFPRDQQQPQMMLRRNFDGGSN 185
           ATLISPPSTLSTVPHGQRNHQPAFNFARDQPHSLYHDQFFPRDQQQPQMMLRRNFDGGSN
Sbjct: 121 ATLISPPSTLSTVPHGQRNHQPAFNFARDQPHSLYHDQFFPRDQQQPQMMLRRNFDGGSN 180

Query: 186 YDGLLAVNVTASIGNLSHQFQQTRAAAGDDRRGTLDHS 224
           YDGLLAVNVTASIGNLSHQFQQTRAAAGDDRRGTLDHS
Sbjct: 181 YDGLLAVNVTASIGNLSHQFQQTRAAAGDDRRGTLDHS 218

[Close]
BLAST of Cucsa.178830 vs. TrEMBL
Match: A0A067K8Q0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13417 PE=4 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 4.0e-78
Identity = 162/226 (71.68%), Postives = 177/226 (78.32%), Query Frame = 1 

Query: 8   SSSSNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPHQR 67
           +SSSNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHP QR
Sbjct: 2   ASSSNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPSQR 61

Query: 68  EDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLCKLQMDLTCAKSELSKYQNLGIGNHAT 127
           EDAVNSLAYEADMRLRDPVYGCVGVISLLQHQL +LQMDL+CAKSELSKYQNLGI  HA 
Sbjct: 62  EDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLRQLQMDLSCAKSELSKYQNLGITGHAG 121

Query: 128 LISPPSTLSTVPHGQRNHQP---------AFNFARDQPHSLYHDQFFPRDQQQPQMMLRR 187
           L +  +  +T      +H P         A +  RD     YH QFFPR+QQQ    + R
Sbjct: 122 LFAAAAAAATATTHNHHHHPQNLGINLIGAGSGGRDHH---YHHQFFPREQQQ----MMR 181

Query: 188 NFDGGSNYD-GLLAVNVTASIGNLSHQFQQTRAAAGDDRRGTLDHS 224
           +FD  +NYD  LLA+NV+ASIG LS QFQQ RAAAGDDRR T+D S
Sbjct: 182 SFDAANNYDASLLAMNVSASIGQLS-QFQQPRAAAGDDRR-TIDPS 218

[Close]
BLAST of Cucsa.178830 vs. TrEMBL
Match: B9HYE7_POPTR (LOB domain protein 6 OS=Populus trichocarpa GN=POPTR_0010s18460g PE=4 SV=1)

HSP 1 Score: 295.8 bits (756), Expect = 4.4e-77
Identity = 161/228 (70.61%), Postives = 179/228 (78.51%), Query Frame = 1 

Query: 8   SSSSNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPHQR 67
           +SSSNSPCAACKFLRRKCQPECVFAPYFPPDQPQKF+NVHKVFGASNVTKLLNELHP QR
Sbjct: 2   ASSSNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFSNVHKVFGASNVTKLLNELHPSQR 61

Query: 68  EDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLCKLQMDLTCAKSELSKYQNLGIGNHA- 127
           EDAVNSLAYEADMRLRDPVYGCVGVISLLQHQL +LQ+DL+CAKSELSKYQNLGI  HA 
Sbjct: 62  EDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLRQLQIDLSCAKSELSKYQNLGITGHAG 121

Query: 128 TLISPPSTLSTVPHGQRNHQPAFNF----------ARDQPHSLYHDQFFPRDQQQPQMML 187
           +LI+  +  +T      +H    N           +RD     YH QFFP+DQQQ    +
Sbjct: 122 SLIAAAAAAATATATTHHHHHPQNLGINLIGAGGGSRDHH---YHHQFFPKDQQQ----M 181

Query: 188 RRNFDGGSNYD-GLLAVNVTASIGNLSHQFQQTRAAAGDDRRGTLDHS 224
            R+FD G+NYD  LLA+NV+ASIG LSH FQQ RAAAGDDRR T+D S
Sbjct: 182 MRSFDAGNNYDASLLAMNVSASIGQLSH-FQQPRAAAGDDRR-TIDPS 220

[Close]
BLAST of Cucsa.178830 vs. TrEMBL
Match: B9HI09_POPTR (LOB domain protein 6 OS=Populus trichocarpa GN=POPTR_0008s07930g PE=4 SV=1)

HSP 1 Score: 294.3 bits (752), Expect = 1.3e-76
Identity = 160/230 (69.57%), Postives = 175/230 (76.09%), Query Frame = 1 

Query: 8   SSSSNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPHQR 67
           +SSSNSPCAACKFLRRKCQPECVFAPYFPPDQPQKF+NVHKVFGASNVTKLLNELHP QR
Sbjct: 2   ASSSNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFSNVHKVFGASNVTKLLNELHPSQR 61

Query: 68  EDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLCKLQMDLTCAKSELSKYQNLGIGNHA- 127
           EDAVNSLAYEADMRLRDPVYGCVGVISLLQHQL +LQMDL+CAKSELSKYQNLGI  HA 
Sbjct: 62  EDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLRQLQMDLSCAKSELSKYQNLGINGHAG 121

Query: 128 ---TLISPPSTLSTVPHGQRNHQPAFNF---------ARDQPHSLYHDQFFPRDQQQPQM 187
                 +  +T +   H   +H               +RD     YH QFFPRDQQQ   
Sbjct: 122 SLIAAAAAAATATATTHHHHHHPQNLGINLIGAGGGGSRDHH---YHHQFFPRDQQQ--- 181

Query: 188 MLRRNFDGGSNYD-GLLAVNVTASIGNLSHQFQQTRAAAGDDRRGTLDHS 224
            + R+FD G+NYD  LLA+NV+ASIG LS QFQQ RAA GDDRR T+D S
Sbjct: 182 -MMRSFDSGNNYDASLLAMNVSASIGQLS-QFQQPRAATGDDRR-TIDPS 222

[Close]
BLAST of Cucsa.178830 vs. TrEMBL
Match: A0A059CS33_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C02148 PE=4 SV=1)

HSP 1 Score: 294.3 bits (752), Expect = 1.3e-76
Identity = 156/212 (73.58%), Postives = 168/212 (79.25%), Query Frame = 1 

Query: 8   SSSSNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPHQR 67
           +SSS SPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPHQR
Sbjct: 2   ASSSTSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPHQR 61

Query: 68  EDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLCKLQMDLTCAKSELSKYQNLGI-GNHA 127
           EDAVNSLAYEADMRLRDPVYGCVGVISLLQHQL +LQMDLTCAKSELSKYQ+LG+   H 
Sbjct: 62  EDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLRQLQMDLTCAKSELSKYQSLGLAAGHG 121

Query: 128 TLISPPSTLSTVPHGQRNHQPAFNFARDQPHSLYHDQFFPRDQQQPQMMLRRNFDGGSNY 187
            + +  +  +T  H Q         A  + H  YH QFFPRD Q  QM+  R FD GSNY
Sbjct: 122 LIAAAAAAATTHNHPQNLGINLLGPASSRDHHHYHHQFFPRDHQH-QMI--RGFDAGSNY 181

Query: 188 D-GLLAVNVTASIGNLSHQFQQTRAAAGDDRR 218
           D  LLA+NV+ASIG L  QF Q RAAAGDDRR
Sbjct: 182 DASLLAMNVSASIGQLG-QFHQPRAAAGDDRR 209

[Close]
BLAST of Cucsa.178830 vs. TAIR10
Match: AT1G65620.1 (AT1G65620.1 Lateral organ boundaries (LOB) domain family protein)

HSP 1 Score: 260.0 bits (663), Expect = 1.3e-69
Identity = 147/220 (66.82%), Postives = 163/220 (74.09%), Query Frame = 1 

Query: 6   MASSSSNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPH 65
           MASSS+NSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHP 
Sbjct: 1   MASSSTNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPS 60

Query: 66  QREDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLCKLQMDLTCAKSELSKYQNLGI--G 125
           QREDAVNSLAYEADMRLRDPVYGCVGVISLLQHQL +LQ+DL+CAKSELSKYQ+LGI   
Sbjct: 61  QREDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLRQLQIDLSCAKSELSKYQSLGILAA 120

Query: 126 NHATLISPPSTLSTVPHGQRNHQPAFNFARDQPHSLYHDQFFPRDQQQPQMMLRRNFDGG 185
            H +L    + L+    G           RD  H   H QFFPR+    QM    +   G
Sbjct: 121 THQSL--GINLLAGAADG------TATAVRDHYH---HHQFFPRE----QMFGGLDVPAG 180

Query: 186 SNYDGLLAVNVTASIGNLSHQFQQTRAAAGDDRRGTLDHS 224
           +NYDG +      +IG ++ QFQQ RAAAGDD R T+D S
Sbjct: 181 NNYDGGI-----LAIGQIT-QFQQPRAAAGDDGRRTVDPS 199

[Close]
BLAST of Cucsa.178830 vs. TAIR10
Match: AT5G66870.1 (AT5G66870.1 ASYMMETRIC LEAVES 2-like 1)

HSP 1 Score: 180.6 bits (457), Expect = 1.0e-45
Identity = 100/171 (58.48%), Postives = 116/171 (67.84%), Query Frame = 1 

Query: 9   SSSNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPHQRE 68
           +SS+SPCAACKFLRRKC  ECVFAPYFPPDQPQKFA VHKVFGASNV KLLNEL  +QRE
Sbjct: 2   ASSSSPCAACKFLRRKCTQECVFAPYFPPDQPQKFAFVHKVFGASNVAKLLNELASNQRE 61

Query: 69  DAVNSLAYEADMRLRDPVYGCVGVISLLQHQLCKLQMDLTCAKSELSKYQNLGIGNHATL 128
           DAVNSL YEA+ RLRDPVYGCVG+IS+LQH+L ++  DL  AK EL+ Y    +G  A L
Sbjct: 62  DAVNSLFYEAEARLRDPVYGCVGLISILQHRLKQVNHDLENAKKELATY----VGPQAML 121

Query: 129 -ISPPSTLSTVPHGQRNHQPAFNFARDQPHSLYHDQFFPRDQ---QQPQMM 176
            I  P  +S  P  QR    + +      H+L      P  Q   QQ Q +
Sbjct: 122 PILQPHFMSLPPQPQRPSSSSASVLTQHHHNLLPMMAIPTGQLYHQQQQQI 168

[Close]
BLAST of Cucsa.178830 vs. TAIR10
Match: AT5G63090.2 (AT5G63090.2 Lateral organ boundaries (LOB) domain family protein)

HSP 1 Score: 179.9 bits (455), Expect = 1.8e-45
Identity = 85/114 (74.56%), Postives = 98/114 (85.96%), Query Frame = 1 

Query: 6   MASSSS--NSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELH 65
           MASSS+  NSPCAACKFLRRKC P C+FAPYFPP++P KFANVHK+FGASNVTKLLNEL 
Sbjct: 1   MASSSNSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELL 60

Query: 66  PHQREDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLCKLQMDLTCAKSELSKY 118
           PHQREDAVNSLAYEA+ R+RDPVYGCVG IS LQ Q+ +LQ +L  A ++L+ Y
Sbjct: 61  PHQREDAVNSLAYEAEARVRDPVYGCVGAISYLQRQVHRLQKELDAANADLAHY 114

[Close]
BLAST of Cucsa.178830 vs. TAIR10
Match: AT3G27650.1 (AT3G27650.1 LOB domain-containing protein 25)

HSP 1 Score: 168.7 bits (426), Expect = 4.1e-42
Identity = 75/110 (68.18%), Postives = 95/110 (86.36%), Query Frame = 1 

Query: 8   SSSSNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPHQR 67
           S+ +NSPCAACKFLRRKC  +CVFAPYFPP++P KFANVH++FGASNV+K+L+E+ PHQR
Sbjct: 33  SNYTNSPCAACKFLRRKCTSDCVFAPYFPPEEPTKFANVHRIFGASNVSKILHEVAPHQR 92

Query: 68  EDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLCKLQMDLTCAKSELSKY 118
           EDAVNSLAYEA+ RL+DPVYGCVG IS+LQ Q+ +LQ +L    ++L +Y
Sbjct: 93  EDAVNSLAYEAEARLKDPVYGCVGAISVLQRQVLRLQRELEETNADLMRY 142

[Close]
BLAST of Cucsa.178830 vs. TAIR10
Match: AT2G23660.1 (AT2G23660.1 LOB domain-containing protein 10)

HSP 1 Score: 159.1 bits (401), Expect = 3.2e-39
Identity = 93/201 (46.27%), Postives = 115/201 (57.21%), Query Frame = 1 

Query: 11  SNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPHQREDA 70
           +++PCAACK LRRKC  ECVFAPYFPP  PQKF  VH+VFGASNVTK+LN+L P QRED 
Sbjct: 2   ASTPCAACKLLRRKCTQECVFAPYFPPTNPQKFIFVHRVFGASNVTKILNDLPPDQREDT 61

Query: 71  VNSLAYEADMRLRDPVYGCVGVISLLQHQLCKLQMDLTCAKSELSKYQNLG--------- 130
           VNSL YEA+ R+RDP+YGCVG+IS LQ  L K+Q DL  AK EL  Y  LG         
Sbjct: 62  VNSLFYEAEARIRDPIYGCVGLISFLQQYLKKIQQDLLTAKEELVGY--LGPDAVIPPPY 121

Query: 131 ---IGNHATLISPPSTL--------STVPHGQRNHQPAFNFARDQPHSLYHD---QFFPR 189
              IGN+     PP+ +          +P G+       N ++   H    D   QF   
Sbjct: 122 LPPIGNN----PPPNFMMSMEGMPPGVIPQGEPLMIREPNMSQQHHHQQPQDEQLQFIAS 181

[Close]
BLAST of Cucsa.178830 vs. NCBI nr
Match: gi|449470364|ref|XP_004152887.1| (PREDICTED: LOB domain-containing protein 6 [Cucumis sativus])

HSP 1 Score: 455.3 bits (1170), Expect = 6.2e-125
Identity = 218/218 (100.00%), Postives = 218/218 (100.00%), Query Frame = 1 

Query: 6   MASSSSNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPH 65
           MASSSSNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPH
Sbjct: 1   MASSSSNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPH 60

Query: 66  QREDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLCKLQMDLTCAKSELSKYQNLGIGNH 125
           QREDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLCKLQMDLTCAKSELSKYQNLGIGNH
Sbjct: 61  QREDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLCKLQMDLTCAKSELSKYQNLGIGNH 120

Query: 126 ATLISPPSTLSTVPHGQRNHQPAFNFARDQPHSLYHDQFFPRDQQQPQMMLRRNFDGGSN 185
           ATLISPPSTLSTVPHGQRNHQPAFNFARDQPHSLYHDQFFPRDQQQPQMMLRRNFDGGSN
Sbjct: 121 ATLISPPSTLSTVPHGQRNHQPAFNFARDQPHSLYHDQFFPRDQQQPQMMLRRNFDGGSN 180

Query: 186 YDGLLAVNVTASIGNLSHQFQQTRAAAGDDRRGTLDHS 224
           YDGLLAVNVTASIGNLSHQFQQTRAAAGDDRRGTLDHS
Sbjct: 181 YDGLLAVNVTASIGNLSHQFQQTRAAAGDDRRGTLDHS 218

[Close]
BLAST of Cucsa.178830 vs. NCBI nr
Match: gi|659082586|ref|XP_008441920.1| (PREDICTED: LOB domain-containing protein 6 [Cucumis melo])

HSP 1 Score: 445.3 bits (1144), Expect = 6.4e-122
Identity = 216/220 (98.18%), Postives = 216/220 (98.18%), Query Frame = 1 

Query: 6   MASSSSNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPH 65
           MASSSSNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPH
Sbjct: 1   MASSSSNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPH 60

Query: 66  QREDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLCKLQMDLTCAKSELSKYQNLGIGNH 125
           QREDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLCKLQMDLTCAKSELSKYQNLGIGNH
Sbjct: 61  QREDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLCKLQMDLTCAKSELSKYQNLGIGNH 120

Query: 126 ATLISPPSTLSTVPHGQRNHQPAFNFARDQPHSLYHDQFFPRD--QQQPQMMLRRNFDGG 185
           ATLISPPS LSTVPHGQRNHQPAFNFARDQPHSLYHDQFFPRD  QQQ QMMLRRNFDGG
Sbjct: 121 ATLISPPSALSTVPHGQRNHQPAFNFARDQPHSLYHDQFFPRDQQQQQQQMMLRRNFDGG 180

Query: 186 SNYDGLLAVNVTASIGNLSHQFQQTRAAAGDDRRGTLDHS 224
           SNYDGLLAVNVTASIGNLSHQFQQTRAAAGDDRRGTLDHS
Sbjct: 181 SNYDGLLAVNVTASIGNLSHQFQQTRAAAGDDRRGTLDHS 220

[Close]
BLAST of Cucsa.178830 vs. NCBI nr
Match: gi|802640637|ref|XP_012078919.1| (PREDICTED: LOB domain-containing protein 6 [Jatropha curcas])

HSP 1 Score: 299.3 bits (765), Expect = 5.7e-78
Identity = 162/226 (71.68%), Postives = 177/226 (78.32%), Query Frame = 1 

Query: 8   SSSSNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPHQR 67
           +SSSNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHP QR
Sbjct: 2   ASSSNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPSQR 61

Query: 68  EDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLCKLQMDLTCAKSELSKYQNLGIGNHAT 127
           EDAVNSLAYEADMRLRDPVYGCVGVISLLQHQL +LQMDL+CAKSELSKYQNLGI  HA 
Sbjct: 62  EDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLRQLQMDLSCAKSELSKYQNLGITGHAG 121

Query: 128 LISPPSTLSTVPHGQRNHQP---------AFNFARDQPHSLYHDQFFPRDQQQPQMMLRR 187
           L +  +  +T      +H P         A +  RD     YH QFFPR+QQQ    + R
Sbjct: 122 LFAAAAAAATATTHNHHHHPQNLGINLIGAGSGGRDHH---YHHQFFPREQQQ----MMR 181

Query: 188 NFDGGSNYD-GLLAVNVTASIGNLSHQFQQTRAAAGDDRRGTLDHS 224
           +FD  +NYD  LLA+NV+ASIG LS QFQQ RAAAGDDRR T+D S
Sbjct: 182 SFDAANNYDASLLAMNVSASIGQLS-QFQQPRAAAGDDRR-TIDPS 218

[Close]
BLAST of Cucsa.178830 vs. NCBI nr
Match: gi|743801842|ref|XP_011015884.1| (PREDICTED: LOB domain-containing protein 6-like [Populus euphratica])

HSP 1 Score: 296.2 bits (757), Expect = 4.8e-77
Identity = 160/226 (70.80%), Postives = 177/226 (78.32%), Query Frame = 1 

Query: 1   RRNWKMASSSSNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLN 60
           RR WKMAS SSNSPCAACKFLRRKCQPECVFAPYFPPDQPQKF+NVHKVFGASNVTKLLN
Sbjct: 2   RRRWKMAS-SSNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFSNVHKVFGASNVTKLLN 61

Query: 61  ELHPHQREDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLCKLQMDLTCAKSELSKYQNL 120
           ELHP QREDAVNSLAYEA+MRLRDPVYGCVGVISLLQHQL +LQ+DL+CAKSELSKYQNL
Sbjct: 62  ELHPSQREDAVNSLAYEAEMRLRDPVYGCVGVISLLQHQLRQLQIDLSCAKSELSKYQNL 121

Query: 121 GI-GNHATLISPPSTLSTVPHGQRNHQP---------AFNFARDQPHSLYHDQFFPRDQQ 180
           GI G   +LI+  +  +       +H P         A   +RD     YH QFFP+DQQ
Sbjct: 122 GITGQAGSLIAAAAAATATATTHHHHHPQNLGINLIGAGGGSRDHH---YHHQFFPKDQQ 181

Query: 181 QPQMMLRRNFDGGSNYD-GLLAVNVTASIGNLSHQFQQTRAAAGDD 216
           Q    + R+FD G+NYD  LLA+NV+ASIG LSH FQQ RAAAGDD
Sbjct: 182 Q----MMRSFDAGNNYDASLLAMNVSASIGQLSH-FQQPRAAAGDD 218

[Close]
BLAST of Cucsa.178830 vs. NCBI nr
Match: gi|224109148|ref|XP_002315100.1| (LOB domain protein 6 [Populus trichocarpa])

HSP 1 Score: 295.8 bits (756), Expect = 6.3e-77
Identity = 161/228 (70.61%), Postives = 179/228 (78.51%), Query Frame = 1 

Query: 8   SSSSNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPHQR 67
           +SSSNSPCAACKFLRRKCQPECVFAPYFPPDQPQKF+NVHKVFGASNVTKLLNELHP QR
Sbjct: 2   ASSSNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFSNVHKVFGASNVTKLLNELHPSQR 61

Query: 68  EDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLCKLQMDLTCAKSELSKYQNLGIGNHA- 127
           EDAVNSLAYEADMRLRDPVYGCVGVISLLQHQL +LQ+DL+CAKSELSKYQNLGI  HA 
Sbjct: 62  EDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLRQLQIDLSCAKSELSKYQNLGITGHAG 121

Query: 128 TLISPPSTLSTVPHGQRNHQPAFNF----------ARDQPHSLYHDQFFPRDQQQPQMML 187
           +LI+  +  +T      +H    N           +RD     YH QFFP+DQQQ    +
Sbjct: 122 SLIAAAAAAATATATTHHHHHPQNLGINLIGAGGGSRDHH---YHHQFFPKDQQQ----M 181

Query: 188 RRNFDGGSNYD-GLLAVNVTASIGNLSHQFQQTRAAAGDDRRGTLDHS 224
            R+FD G+NYD  LLA+NV+ASIG LSH FQQ RAAAGDDRR T+D S
Sbjct: 182 MRSFDAGNNYDASLLAMNVSASIGQLSH-FQQPRAAAGDDRR-TIDPS 220

The following BLAST results are available for this feature:
BLAST of Cucsa.178830 vs. Swiss-Prot
Match NameE-valueIdentityDescription
LBD6_ARATH2.4e-6866.82LOB domain-containing protein 6 OS=Arabidopsis thaliana GN=LBD6 PE=1 SV=1[more]
LBD6_MAIZE2.7e-5157.75LOB domain-containing protein 6 OS=Zea mays GN=LBD6 PE=1 SV=1[more]
IAL1_MAIZE2.5e-4955.98Protein IAL1 OS=Zea mays PE=2 SV=1[more]
LBD6_ORYSI4.7e-4880.36LOB domain-containing protein 6 OS=Oryza sativa subsp. indica GN=LBD6 PE=3 SV=1[more]
LBD6_ORYSJ4.7e-4880.36LOB domain-containing protein 6 OS=Oryza sativa subsp. japonica GN=LBD6 PE=2 SV=... [more]
BLAST of Cucsa.178830 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LML7_CUCSA4.3e-125100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G070920 PE=4 SV=1[more]
A0A067K8Q0_JATCU4.0e-7871.68Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13417 PE=4 SV=1[more]
B9HYE7_POPTR4.4e-7770.61LOB domain protein 6 OS=Populus trichocarpa GN=POPTR_0010s18460g PE=4 SV=1[more]
B9HI09_POPTR1.3e-7669.57LOB domain protein 6 OS=Populus trichocarpa GN=POPTR_0008s07930g PE=4 SV=1[more]
A0A059CS33_EUCGR1.3e-7673.58Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C02148 PE=4 SV=1[more]
BLAST of Cucsa.178830 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G65620.11.3e-6966.82 Lateral organ boundaries (LOB) domain family protein[more]
AT5G66870.11.0e-4558.48 ASYMMETRIC LEAVES 2-like 1[more]
AT5G63090.21.8e-4574.56 Lateral organ boundaries (LOB) domain family protein[more]
AT3G27650.14.1e-4268.18 LOB domain-containing protein 25[more]
AT2G23660.13.2e-3946.27 LOB domain-containing protein 10[more]
BLAST of Cucsa.178830 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449470364|ref|XP_004152887.1|6.2e-125100.00PREDICTED: LOB domain-containing protein 6 [Cucumis sativus][more]
gi|659082586|ref|XP_008441920.1|6.4e-12298.18PREDICTED: LOB domain-containing protein 6 [Cucumis melo][more]
gi|802640637|ref|XP_012078919.1|5.7e-7871.68PREDICTED: LOB domain-containing protein 6 [Jatropha curcas][more]
gi|743801842|ref|XP_011015884.1|4.8e-7770.80PREDICTED: LOB domain-containing protein 6-like [Populus euphratica][more]
gi|224109148|ref|XP_002315100.1|6.3e-7770.61LOB domain protein 6 [Populus trichocarpa][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR004883LOB
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009943 adaxial/abaxial axis specification
biological_process GO:0008150 biological_process
cellular_component GO:0005634 nucleus
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.178830.1Cucsa.178830.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004883Lateral organ boundaries, LOBPFAMPF03195DUF260coord: 14..111
score: 8.0
IPR004883Lateral organ boundaries, LOBPROFILEPS50891LOBcoord: 13..114
score: 27
NoneNo IPR availablePANTHERPTHR31301FAMILY NOT NAMEDcoord: 6..131
score: 8.2
NoneNo IPR availablePANTHERPTHR31301:SF22SUBFAMILY NOT NAMEDcoord: 6..131
score: 8.2