Cucsa.177330 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.177330
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Unknown protein
Location	scaffold01225 : 1361880 .. 1363132 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGTGAAGAAAAAGGGTTGGTGAATTAGGGGTTTGGTTTGATATTAGGGTTGTGCCTAGCTGAGATCATATCATATCATAAAAATGGGAGTATATGCATGCCTCCTAATTTCCCTCTTATTAATTCTTCAAACTGTTTGGATTTCATCCCTTTCTAATGCTTCCAATAATTCTTTTCCATATGAATCTCTTTCCAACCCTCCTCTCCAAACCCATCATCTTCATCAACAACCACGCTTGGGTGAGATTATATTTATTCAAAACCTCTTTATCTTTTGTTTTTGTTTATTGATTTTTAAATTGTGTTTACGAGTACCCTCAAATTATTTAAATTAATCTTAGAAACGTGTTGTGTTTGTTTTGAAATATATAGACAGAGTACTCCTCCCTATTTTTATCTTGACGAAAGATTCATATTTTGTTTTGGTTAAAATATCATTTTGATTATGTATAATATTGGTTCATCAACTTTTAACATTAATCTCTATCATGAGTTTTAAAAAATGATGTTTATTAATATTTTATTTATAAATCAATCAAATATATGTGCATAATGTGTCTTTTCCATTACAGTTATTATTGAACTAATTTTGATAAGATTTCTAAAATGATCAAAAATCGATAATTAAAAAATACACAAGGTCATGTACCTATACAAAATAACATATATATGGAATTTGATATTATTCTTTATTTCACCATATACTTCTTTGACTTTGATCCTAACTTTATCATAATTTTCTTTTCCATTGTTGAGTGAAAAACAATTTTTTATAGAGGTTTGAAATTAAGGTTTTCATTCAATAACTTTTTTTTAGAAAGTTGTGAAAATTAAAGGAAAATTATGTCAAACATTTACTTTTGGTTTTTAAGATATGGAATTGCTAAATGATGAGGAATCGTTAATTATTTATTGTCTTTTGGTTTGGAGTGAAAGGAGGGGGTGGCAAAGAAGAGAATAATAAGACGGCCGCGGAGAGTTGGACTGTTTCAAAGGCTAAAGGGGGCGGAAGGTCCGGCGCCGGCGGGGCAGGAGCCAACAACCACCGGCCGGGAAAGGCGAAGAACGCAGCTTCCACTTTGATGAACTCAAATAACAACATAATAATAATTACCACTCTTCTCCTCTCTTCCTTTTTATACTTGTTTTAAATCTTCTTTTTTTCACTCATTGAAATATGGAATAAGATCAAAACCCTATTTATATATACACACATACATCTTTTTGTTTGAGTAAATTTTTGTTATCGACTAC

mRNA sequence

AGTGAAGAAAAAGGGTTGGTGAATTAGGGGTTTGGTTTGATATTAGGGTTGTGCCTAGCTGAGATCATATCATATCATAAAAATGGGAGTATATGCATGCCTCCTAATTTCCCTCTTATTAATTCTTCAAACTGTTTGGATTTCATCCCTTTCTAATGCTTCCAATAATTCTTTTCCATATGAATCTCTTTCCAACCCTCCTCTCCAAACCCATCATCTTCATCAACAACCACGCTTGGGAGGGGGTGGCAAAGAAGAGAATAATAAGACGGCCGCGGAGAGTTGGACTGTTTCAAAGGCTAAAGGGGGCGGAAGGTCCGGCGCCGGCGGGGCAGGAGCCAACAACCACCGGCCGGGAAAGGCGAAGAACGCAGCTTCCACTTTGATGAACTCAAATAACAACATAATAATAATTACCACTCTTCTCCTCTCTTCCTTTTTATACTTGTTTTAAATCTTCTTTTTTTCACTCATTGAAATATGGAATAAGATCAAAACCCTATTTATATATACACACATACATCTTTTTGTTTGAGTAAATTTTTGTTATCGACTAC

Coding sequence (CDS)

ATGGGAGTATATGCATGCCTCCTAATTTCCCTCTTATTAATTCTTCAAACTGTTTGGATTTCATCCCTTTCTAATGCTTCCAATAATTCTTTTCCATATGAATCTCTTTCCAACCCTCCTCTCCAAACCCATCATCTTCATCAACAACCACGCTTGGGAGGGGGTGGCAAAGAAGAGAATAATAAGACGGCCGCGGAGAGTTGGACTGTTTCAAAGGCTAAAGGGGGCGGAAGGTCCGGCGCCGGCGGGGCAGGAGCCAACAACCACCGGCCGGGAAAGGCGAAGAACGCAGCTTCCACTTTGATGAACTCAAATAACAACATAATAATAATTACCACTCTTCTCCTCTCTTCCTTTTTATACTTGTTTTAA

Protein sequence

MGVYACLLISLLLILQTVWISSLSNASNNSFPYESLSNPPLQTHHLHQQPRLGGGGKEENNKTAAESWTVSKAKGGGRSGAGGAGANNHRPGKAKNAASTLMNSNNNIIIITTLLLSSFLYLF*

Homology

[Close]

BLAST of Cucsa.177330 vs. TrEMBL
Match: A0A0A0LCI5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G710765 PE=4 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 2.4e-64
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 1


Query: 1   MGVYACLLISLLLILQTVWISSLSNASNNSFPYESLSNPPLQTHHLHQQPRLVKGGGGKE 60
           MGVYACLLISLLLILQTVWISSLSNASNNSFPYESLSNPPLQTHHLHQQPRLVKGGGGKE
Sbjct: 1   MGVYACLLISLLLILQTVWISSLSNASNNSFPYESLSNPPLQTHHLHQQPRLVKGGGGKE 60

Query: 61  ENNKTAAESWTVSKAKGGGRSGAGGAGANNHRPGKAKNAASTLMNSNNNIIIITTLLLSS 120
           ENNKTAAESWTVSKAKGGGRSGAGGAGANNHRPGKAKNAASTLMNSNNNIIIITTLLLSS
Sbjct: 61  ENNKTAAESWTVSKAKGGGRSGAGGAGANNHRPGKAKNAASTLMNSNNNIIIITTLLLSS 120

Query: 121 FLYLF 126
           FLYLF
Sbjct: 121 FLYLF 125

[Close]

BLAST of Cucsa.177330 vs. NCBI nr
Match: gi|700203516|gb|KGN58649.1| (hypothetical protein Csa_3G710765 [Cucumis sativus])

HSP 1 Score: 252.7 bits (644), Expect = 3.4e-64
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 1


Query: 1   MGVYACLLISLLLILQTVWISSLSNASNNSFPYESLSNPPLQTHHLHQQPRLVKGGGGKE 60
           MGVYACLLISLLLILQTVWISSLSNASNNSFPYESLSNPPLQTHHLHQQPRLVKGGGGKE
Sbjct: 1   MGVYACLLISLLLILQTVWISSLSNASNNSFPYESLSNPPLQTHHLHQQPRLVKGGGGKE 60

Query: 61  ENNKTAAESWTVSKAKGGGRSGAGGAGANNHRPGKAKNAASTLMNSNNNIIIITTLLLSS 120
           ENNKTAAESWTVSKAKGGGRSGAGGAGANNHRPGKAKNAASTLMNSNNNIIIITTLLLSS
Sbjct: 61  ENNKTAAESWTVSKAKGGGRSGAGGAGANNHRPGKAKNAASTLMNSNNNIIIITTLLLSS 120

Query: 121 FLYLF 126
           FLYLF
Sbjct: 121 FLYLF 125

The following BLAST results are available for this feature:

BLAST of Cucsa.177330 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LCI5_CUCSA	2.4e-64	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G710765 PE=4 SV=1	[more]

BLAST of Cucsa.177330 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700203516\|gb\|KGN58649.1\|	3.4e-64	100.00	hypothetical protein Csa_3G710765 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.177330.2	Cucsa.177330.2	mRNA
Cucsa.177330.1	Cucsa.177330.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.177330	CSPI03G30260	Wild cucumber (PI 183967)	cgycpiB278
Cucsa.177330	MELO3C030936.2	Melon (DHL92) v3.6.1	cgymedB312
Cucsa.177330	CsaV3_3G032710	Cucumber (Chinese Long) v3	cgycucB281
Cucsa.177330	Bhi11G001244	Wax gourd	cgywgoB360

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.177330	Cucurbita maxima (Rimu)	cgycmaB0497
Cucsa.177330	Cucurbita maxima (Rimu)	cgycmaB0499
Cucsa.177330	Cucurbita moschata (Rifu)	cgycmoB0499
Cucsa.177330	Cucurbita moschata (Rifu)	cgycmoB0501
Cucsa.177330	Cucumber (Chinese Long) v2	cgycuB268
Cucsa.177330	Melon (DHL92) v3.5.1	cgymeB316
Cucsa.177330	Melon (DHL92) v3.5.1	cgymeB317
Cucsa.177330	Watermelon (Charleston Gray)	cgywcgB312
Cucsa.177330	Watermelon (97103) v1	cgywmB334
Cucsa.177330	Cucurbita pepo (Zucchini)	cgycpeB0487
Cucsa.177330	Cucurbita pepo (Zucchini)	cgycpeB0489
Cucsa.177330	Bottle gourd (USVL1VR-Ls)	cgylsiB297
Cucsa.177330	Melon (DHL92) v3.6.1	cgymedB311
Cucsa.177330	Silver-seed gourd	carcgyB0242
Cucsa.177330	Silver-seed gourd	carcgyB0928
Cucsa.177330	Watermelon (97103) v2	cgywmbB317