Cucsa.177330.2 (mRNA) Cucumber (Gy14) v1

Overview
NameCucsa.177330.2
TypemRNA
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionUnknown protein
Locationscaffold01225 : 1361880 .. 1363132 (-)
Sequence length557
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGTGAAGAAAAAGGGTTGGTGAATTAGGGGTTTGGTTTGATATTAGGGTTGTGCCTAGCTGAGATCATATCATATCATAAAAATGGGAGTATATGCATGCCTCCTAATTTCCCTCTTATTAATTCTTCAAACTGTTTGGATTTCATCCCTTTCTAATGCTTCCAATAATTCTTTTCCATATGAATCTCTTTCCAACCCTCCTCTCCAAACCCATCATCTTCATCAACAACCACGCTTGGGTGAGATTATATTTATTCAAAACCTCTTTATCTTTTGTTTTTGTTTATTGATTTTTAAATTGTGTTTACGAGTACCCTCAAATTATTTAAATTAATCTTAGAAACGTGTTGTGTTTGTTTTGAAATATATAGACAGAGTACTCCTCCCTATTTTTATCTTGACGAAAGATTCATATTTTGTTTTGGTTAAAATATCATTTTGATTATGTATAATATTGGTTCATCAACTTTTAACATTAATCTCTATCATGAGTTTTAAAAAATGATGTTTATTAATATTTTATTTATAAATCAATCAAATATATGTGCATAATGTGTCTTTTCCATTACAGTTATTATTGAACTAATTTTGATAAGATTTCTAAAATGATCAAAAATCGATAATTAAAAAATACACAAGGTCATGTACCTATACAAAATAACATATATATGGAATTTGATATTATTCTTTATTTCACCATATACTTCTTTGACTTTGATCCTAACTTTATCATAATTTTCTTTTCCATTGTTGAGTGAAAAACAATTTTTTATAGAGGTTTGAAATTAAGGTTTTCATTCAATAACTTTTTTTTAGAAAGTTGTGAAAATTAAAGGAAAATTATGTCAAACATTTACTTTTGGTTTTTAAGATATGGAATTGCTAAATGATGAGGAATCGTTAATTATTTATTGTCTTTTGGTTTGGAGTGAAAGGAGGGGGTGGCAAAGAAGAGAATAATAAGACGGCCGCGGAGAGTTGGACTGTTTCAAAGGCTAAAGGGGGCGGAAGGTCCGGCGCCGGCGGGGCAGGAGCCAACAACCACCGGCCGGGAAAGGCGAAGAACGCAGCTTCCACTTTGATGAACTCAAATAACAACATAATAATAATTACCACTCTTCTCCTCTCTTCCTTTTTATACTTGTTTTAAATCTTCTTTTTTTCACTCATTGAAATATGGAATAAGATCAAAACCCTATTTATATATACACACATACATCTTTTTGTTTGAGTAAATTTTTGTTATCGACTAC

mRNA sequence

AGTGAAGAAAAAGGGTTGGTGAATTAGGGGTTTGGTTTGATATTAGGGTTGTGCCTAGCTGAGATCATATCATATCATAAAAATGGGAGTATATGCATGCCTCCTAATTTCCCTCTTATTAATTCTTCAAACTGTTTGGATTTCATCCCTTTCTAATGCTTCCAATAATTCTTTTCCATATGAATCTCTTTCCAACCCTCCTCTCCAAACCCATCATCTTCATCAACAACCACGCTTGGGAGGGGGTGGCAAAGAAGAGAATAATAAGACGGCCGCGGAGAGTTGGACTGTTTCAAAGGCTAAAGGGGGCGGAAGGTCCGGCGCCGGCGGGGCAGGAGCCAACAACCACCGGCCGGGAAAGGCGAAGAACGCAGCTTCCACTTTGATGAACTCAAATAACAACATAATAATAATTACCACTCTTCTCCTCTCTTCCTTTTTATACTTGTTTTAAATCTTCTTTTTTTCACTCATTGAAATATGGAATAAGATCAAAACCCTATTTATATATACACACATACATCTTTTTGTTTGAGTAAATTTTTGTTATCGACTAC

Coding sequence (CDS)

ATGGGAGTATATGCATGCCTCCTAATTTCCCTCTTATTAATTCTTCAAACTGTTTGGATTTCATCCCTTTCTAATGCTTCCAATAATTCTTTTCCATATGAATCTCTTTCCAACCCTCCTCTCCAAACCCATCATCTTCATCAACAACCACGCTTGGGAGGGGGTGGCAAAGAAGAGAATAATAAGACGGCCGCGGAGAGTTGGACTGTTTCAAAGGCTAAAGGGGGCGGAAGGTCCGGCGCCGGCGGGGCAGGAGCCAACAACCACCGGCCGGGAAAGGCGAAGAACGCAGCTTCCACTTTGATGAACTCAAATAACAACATAATAATAATTACCACTCTTCTCCTCTCTTCCTTTTTATACTTGTTTTAA

Protein sequence

MGVYACLLISLLLILQTVWISSLSNASNNSFPYESLSNPPLQTHHLHQQPRLGGGGKEENNKTAAESWTVSKAKGGGRSGAGGAGANNHRPGKAKNAASTLMNSNNNIIIITTLLLSSFLYLF*
Homology
[Close]
BLAST of Cucsa.177330.2 vs. TrEMBL
Match: A0A0A0LCI5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G710765 PE=4 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 8.4e-62
Identity = 123/125 (98.40%), Postives = 123/125 (98.40%), Query Frame = 1 

Query: 1   MGVYACLLISLLLILQTVWISSLSNASNNSFPYESLSNPPLQTHHLHQQPRL--GGGGKE 60
           MGVYACLLISLLLILQTVWISSLSNASNNSFPYESLSNPPLQTHHLHQQPRL  GGGGKE
Sbjct: 1   MGVYACLLISLLLILQTVWISSLSNASNNSFPYESLSNPPLQTHHLHQQPRLVKGGGGKE 60

Query: 61  ENNKTAAESWTVSKAKGGGRSGAGGAGANNHRPGKAKNAASTLMNSNNNIIIITTLLLSS 120
           ENNKTAAESWTVSKAKGGGRSGAGGAGANNHRPGKAKNAASTLMNSNNNIIIITTLLLSS
Sbjct: 61  ENNKTAAESWTVSKAKGGGRSGAGGAGANNHRPGKAKNAASTLMNSNNNIIIITTLLLSS 120

Query: 121 FLYLF 124
           FLYLF
Sbjct: 121 FLYLF 125

[Close]
BLAST of Cucsa.177330.2 vs. NCBI nr
Match: gi|700203516|gb|KGN58649.1| (hypothetical protein Csa_3G710765 [Cucumis sativus])

HSP 1 Score: 244.2 bits (622), Expect = 1.2e-61
Identity = 123/125 (98.40%), Postives = 123/125 (98.40%), Query Frame = 1 

Query: 1   MGVYACLLISLLLILQTVWISSLSNASNNSFPYESLSNPPLQTHHLHQQPRL--GGGGKE 60
           MGVYACLLISLLLILQTVWISSLSNASNNSFPYESLSNPPLQTHHLHQQPRL  GGGGKE
Sbjct: 1   MGVYACLLISLLLILQTVWISSLSNASNNSFPYESLSNPPLQTHHLHQQPRLVKGGGGKE 60

Query: 61  ENNKTAAESWTVSKAKGGGRSGAGGAGANNHRPGKAKNAASTLMNSNNNIIIITTLLLSS 120
           ENNKTAAESWTVSKAKGGGRSGAGGAGANNHRPGKAKNAASTLMNSNNNIIIITTLLLSS
Sbjct: 61  ENNKTAAESWTVSKAKGGGRSGAGGAGANNHRPGKAKNAASTLMNSNNNIIIITTLLLSS 120

Query: 121 FLYLF 124
           FLYLF
Sbjct: 121 FLYLF 125

The following BLAST results are available for this feature:
BLAST of Cucsa.177330.2 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LCI5_CUCSA8.4e-6298.40Uncharacterized protein OS=Cucumis sativus GN=Csa_3G710765 PE=4 SV=1[more]
BLAST of Cucsa.177330.2 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700203516|gb|KGN58649.1|1.2e-6198.40hypothetical protein Csa_3G710765 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cucsa.177330Cucsa.177330gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cucsa.177330.2Cucsa.177330.2-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsa.177330.2.CDS.2Cucsa.177330.2.CDS.2CDS
Cucsa.177330.2.CDS.1Cucsa.177330.2.CDS.1CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsa.177330.2.three_prime_UTR.1Cucsa.177330.2.three_prime_UTR.1three_prime_UTR


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsa.177330.2.five_prime_UTR.1Cucsa.177330.2.five_prime_UTR.1five_prime_UTR