Cucsa.170760 (gene) Cucumber (Gy14) v1

NameCucsa.170760
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionDNA-directed RNA polymerase subunit beta
Locationscaffold01179 : 86192 .. 87124 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TAATTCATTTCCACAGGCATTCATTTCAGATTTTCCATAACTGTCTTAACTTCAATTGGCAATGGCGATGGTAGATTCAAGTTTTATCTTCATCGGTTTCTCCCCCGTACCTCATCCCCTTTTGAACAACAATAATGGCAGAAAATTCGGAATCACGTCGGCAAAACGTACACAAGACTCCGATTCCGATTCCGCTTCTTCAACCCAaCCAAATCAATTCAAATTTCCATCTCTGAGAGTATCAAATCCACTTCTAGCCCGATCTGTCGTTTCGGTCCTCGGATTAGGGTTCGTCGATGCAGGGTaCGAAAATTTCACCTCTAATTAATTTCGATTTTGAGAATTGCTCTGTTTtATTTTtGTTTTGACTGAAACTGAAGTCGAATTAGGGTTTGGAATGATTAGGTATAGCGGAGATTGGTCTAGAATTGGAGCGATTACGAAGGAAACTGAAGATTTGCTTAAGATTGGAGCTTTGTTGGTTGTTCCGTTTTGTGTATTTCTCGTATTTTCTTTCTCAAAATATGATTCGGATTCTTCGTAAGTGTATGGATGATGGATTCCCCAAAATGGTTAGAAATAATTTCAATTTGAAAATGGTAGCTAAGCCAAAGTTGCTTTTTTTGGTTAGAAGGGAGATTTTGAAGAACATGTACAAAATTCATTTACTGATATGCACATGGTTCTTGTTGGTTTCCACTCTCATGTTTTAGAATTTAGTAAGCGTCACACTGTTTAGAAATAGTCATATTCGAACAAGAAATGATATCTAGGTGCATACATTCACTTTAGTAGCTTATTGGCTAAAGTCACTATGCGAATAAGCAATCCTAAGTTGGACAACCTTTGGTGAGGTTGGAGTTCGTAGTATCCATCTTTGTATTGAATCTTCATCTATCAATTAATAGTCTTATAATCCTATATACATTCTTG

mRNA sequence

TAATTCATTTCCACAGGCATTCATTTCAGATTTTCCATAACTGTCTTAACTTCAATTGGCAATGGCGATGGTAGATTCAAGTTTTATCTTCATCGGTTTCTCCCCCGTACCTCATCCCCTTTTGAACAACAATAATGGCAGAAAATTCGGAATCACGTCGGCAAAACGTACACAAGACTCCGATTCCGATTCCGCTTCTTCAACCCAACCAAATCAATTCAAATTTCCATCTCTGAGAGTATCAAATCCACTTCTAGCCCGATCTGTCGTTTCGGTCCTCGGATTAGGGTTCGTCGATGCAGGGTATAGCGGAGATTGGTCTAGAATTGGAGCGATTACGAAGGAAACTGAAGATTTGCTTAAGATTGGAGCTTTGTTGGTTGTTCCGTTTTGTGTATTTCTCGTATTTTCTTTCTCAAAATATGATTCGGATTCTTCGTAAGTGTATGGATGATGGATTCCCCAAAATGGTTAGAAATAATTTCAATTTGAAAATGGTAGCTAAGCCAAAGTTGCTTTTTTTGGTTAGAAGGGAGATTTTGAAGAACATGTACAAAATTCATTTACTGATATGCACATGGTTCTTGTTGGTTTCCACTCTCATGTTTTAGAATTTAGTAAGCGTCACACTGTTTAGAAATAGTCATATTCGAACAAGAAATGATATCTAGGTGCATACATTCACTTTAGTAGCTTATTGGCTAAAGTCACTATGCGAATAAGCAATCCTAAGTTGGACAACCTTTGGTGAGGTTGGAGTTCGTAGTATCCATCTTTGTATTGAATCTTCATCTATCAATTAATAGTCTTATAATCCTATATACATTCTTG

Coding sequence (CDS)

ATGGCGATGGTAGATTCAAGTTTTATCTTCATCGGTTTCTCCCCCGTACCTCATCCCCTTTTGAACAACAATAATGGCAGAAAATTCGGAATCACGTCGGCAAAACGTACACAAGACTCCGATTCCGATTCCGCTTCTTCAACCCAaCCAAATCAATTCAAATTTCCATCTCTGAGAGTATCAAATCCACTTCTAGCCCGATCTGTCGTTTCGGTCCTCGGATTAGGGTTCGTCGATGCAGGGTATAGCGGAGATTGGTCTAGAATTGGAGCGATTACGAAGGAAACTGAAGATTTGCTTAAGATTGGAGCTTTGTTGGTTGTTCCGTTTTGTGTATTTCTCGTATTTTCTTTCTCAAAATATGATTCGGATTCTTCGTAA

Protein sequence

MAMVDSSFIFIGFSPVPHPLLNNNNGRKFGITSAKRTQDSDSDSASSTQPNQFKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEDLLKIGALLVVPFCVFLVFSFSKYDSDSS*
BLAST of Cucsa.170760 vs. TrEMBL
Match: A0A0A0LWH4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G257930 PE=4 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 7.0e-64
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 1

Query: 1   MAMVDSSFIFIGFSPVPHPLLNNNNGRKFGITSAKRTQDSDSDSASSTQPNQFKFPSLRV 60
           MAMVDSSFIFIGFSPVPHPLLNNNNGRKFGITSAKRTQDSDSDSASSTQPNQFKFPSLRV
Sbjct: 1   MAMVDSSFIFIGFSPVPHPLLNNNNGRKFGITSAKRTQDSDSDSASSTQPNQFKFPSLRV 60

Query: 61  SNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEDLLKIGALLVVPFCVFLVFSFSK 120
           SNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEDLLKIGALLVVPFCVFLVFSFSK
Sbjct: 61  SNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEDLLKIGALLVVPFCVFLVFSFSK 120

Query: 121 YDSDSS 127
           YDSDSS
Sbjct: 121 YDSDSS 126

BLAST of Cucsa.170760 vs. TrEMBL
Match: D7U1G5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0037g00830 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 1.4e-24
Identity = 68/120 (56.67%), Postives = 82/120 (68.33%), Query Frame = 1

Query: 1   MAMVDSSFIFIGFSPVPHPLLNNNNGRKFGITSAKRTQDSDSDSASSTQPNQFKFPSLRV 60
           M +   +FIF   + +P  L +  NG KF  T A   Q  D+   SSTQ  Q   P LRV
Sbjct: 1   MLVTQDTFIF---NTLPPYLFHIKNGTKFRPTLA---QKRDASKNSSTQQQQSILP-LRV 60

Query: 61  SNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEDLLKIGALLVVPFCVFLVFSFSK 120
           SN +LARS ++VLGLGF+DAGYSGDWSRIG I+KETED LK+ ALLVVP C+FL+FS SK
Sbjct: 61  SNTILARSAIAVLGLGFIDAGYSGDWSRIGVISKETEDFLKLSALLVVPLCLFLIFSISK 113

BLAST of Cucsa.170760 vs. TrEMBL
Match: A0A059CSI4_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C02516 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 7.1e-24
Identity = 69/126 (54.76%), Postives = 87/126 (69.05%), Query Frame = 1

Query: 1   MAMVDSSFIFIGFSPVP-HPLLNNNNGRKFGITSAKRTQDSDSDSASSTQPNQFKFPSLR 60
           M +  +SFIF   + VP HPL+N   GRK G   AK+   +D  S +  QP      +LR
Sbjct: 1   MVITRTSFIF---TKVPAHPLIN---GRKPGAILAKKGDLTDRSSKTRQQPGF----ALR 60

Query: 61  VSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEDLLKIGALLVVPFCVFLVFSFS 120
           VSNPLL ++ ++V GLGF+DAGYSGDWSRIGAI+KE EDLLKI A +VVP C+F +FS S
Sbjct: 61  VSNPLLTKAAIAVFGLGFIDAGYSGDWSRIGAISKEGEDLLKIAAFVVVPLCIFAIFSVS 115

Query: 121 KYDSDS 126
           K DS+S
Sbjct: 121 K-DSES 115

BLAST of Cucsa.170760 vs. TrEMBL
Match: A0A058ZTX1_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_L01549 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.6e-23
Identity = 69/126 (54.76%), Postives = 86/126 (68.25%), Query Frame = 1

Query: 1   MAMVDSSFIFIGFSPVP-HPLLNNNNGRKFGITSAKRTQDSDSDSASSTQPNQFKFPSLR 60
           M +  +SFIF   + VP HPL+N   GRK G   AK+   +D  S +  QP      +LR
Sbjct: 1   MVITRTSFIF---TKVPAHPLIN---GRKPGAILAKKGDLTDRSSKTRRQPGF----ALR 60

Query: 61  VSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEDLLKIGALLVVPFCVFLVFSFS 120
           VSNPLL R+ ++V GLGF+DAGYSGDWSRIGAI+KE EDLLKI A +VVP C+F + S S
Sbjct: 61  VSNPLLTRAAIAVFGLGFIDAGYSGDWSRIGAISKEGEDLLKIAAFVVVPLCIFAILSVS 115

Query: 121 KYDSDS 126
           K DS+S
Sbjct: 121 K-DSES 115

BLAST of Cucsa.170760 vs. TrEMBL
Match: A0A0D2UZ55_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G368800 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.3e-22
Identity = 64/121 (52.89%), Postives = 81/121 (66.94%), Query Frame = 1

Query: 7   SFIFIGFSPVPHP--LLNNNNGRKFGITSAKRTQDSDSDSASSTQPNQFKFPSLRVSNPL 66
           SF    F+ +P P  L  N NG +F   ++KR ++    S +   P   KF  L+VSN +
Sbjct: 2   SFTHTIFNGIPQPSRLPVNRNGTRFITKASKRKENGGLTSRNQQLP---KF-QLKVSNTV 61

Query: 67  LARSVVSVLGLGFVDAGYSGDWSRIGAITKETEDLLKIGALLVVPFCVFLVFSFSKYDSD 126
           +ARSVV + GLGF+DAGYSGDWSRIG I+K+ EDLLKI A LVVPFC+FLV SFSK   D
Sbjct: 62  IARSVVVLFGLGFIDAGYSGDWSRIGVISKDVEDLLKIAAFLVVPFCIFLVSSFSKQTPD 118

BLAST of Cucsa.170760 vs. TAIR10
Match: AT4G30845.1 (AT4G30845.1 unknown protein)

HSP 1 Score: 99.8 bits (247), Expect = 1.3e-21
Identity = 55/117 (47.01%), Postives = 75/117 (64.10%), Query Frame = 1

Query: 10  FIGFSPVPHPLLNNNNGRKF--GITSAKRTQDSDSDSASSTQPNQFKFPSLRVSNPLLAR 69
           F+ F P      N+N  R F  G+T   + +D  S+ ++  +P       ++V N ++AR
Sbjct: 9   FVSFCP------NDNKLRSFANGVTIMSKRRDF-SEKSNEERP----ILRIKVPNTIVAR 68

Query: 70  SVVSVLGLGFVDAGYSGDWSRIGAITKETEDLLKIGALLVVPFCVFLVFSFSKYDSD 125
           S ++VL LGF+DAGYSGDWSRIG I+KETE+LLKI A LVVP C+FL  SFS   +D
Sbjct: 69  SAIAVLSLGFIDAGYSGDWSRIGVISKETEELLKIAAFLVVPLCIFLALSFSNDSTD 114

BLAST of Cucsa.170760 vs. NCBI nr
Match: gi|449457863|ref|XP_004146667.1| (PREDICTED: uncharacterized protein LOC101206545 [Cucumis sativus])

HSP 1 Score: 251.1 bits (640), Expect = 1.0e-63
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 1

Query: 1   MAMVDSSFIFIGFSPVPHPLLNNNNGRKFGITSAKRTQDSDSDSASSTQPNQFKFPSLRV 60
           MAMVDSSFIFIGFSPVPHPLLNNNNGRKFGITSAKRTQDSDSDSASSTQPNQFKFPSLRV
Sbjct: 1   MAMVDSSFIFIGFSPVPHPLLNNNNGRKFGITSAKRTQDSDSDSASSTQPNQFKFPSLRV 60

Query: 61  SNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEDLLKIGALLVVPFCVFLVFSFSK 120
           SNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEDLLKIGALLVVPFCVFLVFSFSK
Sbjct: 61  SNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEDLLKIGALLVVPFCVFLVFSFSK 120

Query: 121 YDSDSS 127
           YDSDSS
Sbjct: 121 YDSDSS 126

BLAST of Cucsa.170760 vs. NCBI nr
Match: gi|659086235|ref|XP_008443827.1| (PREDICTED: uncharacterized protein LOC103487329 [Cucumis melo])

HSP 1 Score: 225.3 bits (573), Expect = 5.9e-56
Identity = 118/129 (91.47%), Postives = 120/129 (93.02%), Query Frame = 1

Query: 1   MAMVDSSFIFIGFSPVPHPLLNNN---NGRKFGITSAKRTQDSDSDSASSTQPNQFKFPS 60
           MAMVDSSFIFIG S VPHPLLNNN   NGRKFGITSAKRTQDSDS   SSTQPNQFKFPS
Sbjct: 1   MAMVDSSFIFIGISAVPHPLLNNNKNNNGRKFGITSAKRTQDSDS--TSSTQPNQFKFPS 60

Query: 61  LRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEDLLKIGALLVVPFCVFLVFS 120
           LRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETE+LLKIGA LVVPFCVFLVFS
Sbjct: 61  LRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEELLKIGAFLVVPFCVFLVFS 120

Query: 121 FSKYDSDSS 127
           FSK+DSDSS
Sbjct: 121 FSKFDSDSS 127

BLAST of Cucsa.170760 vs. NCBI nr
Match: gi|694419824|ref|XP_009337849.1| (PREDICTED: uncharacterized protein LOC103930267 [Pyrus x bretschneideri])

HSP 1 Score: 121.7 bits (304), Expect = 9.2e-25
Identity = 65/126 (51.59%), Postives = 85/126 (67.46%), Query Frame = 1

Query: 1   MAMVDSSFIFIGFSPV-PHPLLNNNNGRKFGITSAKRTQDSDSDSASSTQPNQFKFP-SL 60
           M + + S IF     + P+ LL   NGR+FG T     ++   + +  +Q  Q  FP  +
Sbjct: 1   MLVAEKSLIFSSSRNLSPYLLLKRKNGREFGSTFLLAKREDMPEDSRRSQDQQSVFPLRI 60

Query: 61  RVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEDLLKIGALLVVPFCVFLVFSF 120
           RVSN +LAR+ V+V GLGF+DAGYSGDWSRIGAI+KE+E+LLKI A LVVPFC+FL+ SF
Sbjct: 61  RVSNTVLARAAVAVFGLGFIDAGYSGDWSRIGAISKESEELLKISAFLVVPFCLFLIISF 120

Query: 121 SKYDSD 125
           SK   D
Sbjct: 121 SKEAED 126

BLAST of Cucsa.170760 vs. NCBI nr
Match: gi|470148842|ref|XP_004309956.1| (PREDICTED: uncharacterized protein LOC101291784 [Fragaria vesca subsp. vesca])

HSP 1 Score: 121.7 bits (304), Expect = 9.2e-25
Identity = 64/105 (60.95%), Postives = 76/105 (72.38%), Query Frame = 1

Query: 20  LLNNNNGRKFGITSAKRTQDSDSDSASSTQPNQFKFPSLRVSNPLLARSVVSVLGLGFVD 79
           L    NGR  G   AKR +D  ++  SSTQ   F FP LRVSN ++ARSVV+VLGLGF+D
Sbjct: 17  LFVKKNGRDLGTIMAKR-RDLPTE-ISSTQEGGFVFPRLRVSNTIVARSVVAVLGLGFID 76

Query: 80  AGYSGDWSRIGAITKETEDLLKIGALLVVPFCVFLVFSFSKYDSD 125
           AGYSGDWSR G I+KE+EDLLK+ A LVVP C+FL+FS SK   D
Sbjct: 77  AGYSGDWSRFGVISKESEDLLKVAAFLVVPLCLFLIFSISKQHED 119

BLAST of Cucsa.170760 vs. NCBI nr
Match: gi|225445770|ref|XP_002274551.1| (PREDICTED: uncharacterized protein LOC100267275 [Vitis vinifera])

HSP 1 Score: 120.6 bits (301), Expect = 2.1e-24
Identity = 68/120 (56.67%), Postives = 82/120 (68.33%), Query Frame = 1

Query: 1   MAMVDSSFIFIGFSPVPHPLLNNNNGRKFGITSAKRTQDSDSDSASSTQPNQFKFPSLRV 60
           M +   +FIF   + +P  L +  NG KF  T A   Q  D+   SSTQ  Q   P LRV
Sbjct: 1   MLVTQDTFIF---NTLPPYLFHIKNGTKFRPTLA---QKRDASKNSSTQQQQSILP-LRV 60

Query: 61  SNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEDLLKIGALLVVPFCVFLVFSFSK 120
           SN +LARS ++VLGLGF+DAGYSGDWSRIG I+KETED LK+ ALLVVP C+FL+FS SK
Sbjct: 61  SNTILARSAIAVLGLGFIDAGYSGDWSRIGVISKETEDFLKLSALLVVPLCLFLIFSISK 113

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0LWH4_CUCSA7.0e-64100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G257930 PE=4 SV=1[more]
D7U1G5_VITVI1.4e-2456.67Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0037g00830 PE=4 SV=... [more]
A0A059CSI4_EUCGR7.1e-2454.76Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C02516 PE=4 SV=1[more]
A0A058ZTX1_EUCGR1.6e-2354.76Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_L01549 PE=4 SV=1[more]
A0A0D2UZ55_GOSRA1.3e-2252.89Uncharacterized protein OS=Gossypium raimondii GN=B456_009G368800 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT4G30845.11.3e-2147.01 unknown protein[more]
Match NameE-valueIdentityDescription
gi|449457863|ref|XP_004146667.1|1.0e-63100.00PREDICTED: uncharacterized protein LOC101206545 [Cucumis sativus][more]
gi|659086235|ref|XP_008443827.1|5.9e-5691.47PREDICTED: uncharacterized protein LOC103487329 [Cucumis melo][more]
gi|694419824|ref|XP_009337849.1|9.2e-2551.59PREDICTED: uncharacterized protein LOC103930267 [Pyrus x bretschneideri][more]
gi|470148842|ref|XP_004309956.1|9.2e-2560.95PREDICTED: uncharacterized protein LOC101291784 [Fragaria vesca subsp. vesca][more]
gi|225445770|ref|XP_002274551.1|2.1e-2456.67PREDICTED: uncharacterized protein LOC100267275 [Vitis vinifera][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006144 purine nucleobase metabolic process
biological_process GO:0006206 pyrimidine nucleobase metabolic process
biological_process GO:0006351 transcription, DNA-templated
biological_process GO:0008150 biological_process
cellular_component GO:0005730 nucleolus
cellular_component GO:0005575 cellular_component
molecular_function GO:0003899 DNA-directed RNA polymerase activity
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.170760.1Cucsa.170760.1mRNA


Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR38389FAMILY NOT NAMEDcoord: 10..124
score: 7.3