Carg14071 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg14071
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	DNA-directed RNA polymerase subunit beta
Location	Cucurbita_argyrosperma_scaffold_097 : 672264 .. 672697 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCGATCGCAGATTCAAGTTTTATCTTCACGGGCCTCTCTGCCCTACCTCATCCCCTACTTCTCAGCAACAACAATGCCAGAAAATTCGGGACCACATCGGCAAAACGAACCGGCGATTCCGATTCCATTTCATCGACGCAACTCAAATTTCCATCGCTGAGAGTTGCAAATCCACTTCTCGCCCGATCTGTCGTTGCGGTACTCGGATTAGGGTTCGTCGATGCAGGGTATGAAAATTTAGTTTCGTCTTCGTTTCCACTTGAATTGAAGTTGAATTAGGGCTTGAAATGATCAGGTACAGTGGCGATTGGTCTAGAATTGGCGCCATTACCAAGGAAACTGAAGATTTGTTGAAGATTGGAGCTTTCTTGGTGGTTCCCTTCTGCGTATTTCTGATTTTTTCTTTCTCCGAACAGACGGATTCTTCCTGA

mRNA sequence

ATGCCGATCGCAGATTCAAGTTTTATCTTCACGGGCCTCTCTGCCCTACCTCATCCCCTACTTCTCAGCAACAACAATGCCAGAAAATTCGGGACCACATCGGCAAAACGAACCGGCGATTCCGATTCCATTTCATCGACGCAACTCAAATTTCCATCGCTGAGAGTTGCAAATCCACTTCTCGCCCGATCTGTCGTTGCGGTACTCGGATTAGGGTTCGTCGATGCAGGGTACAGTGGCGATTGGTCTAGAATTGGCGCCATTACCAAGGAAACTGAAGATTTGTTGAAGATTGGAGCTTTCTTGGTGGTTCCCTTCTGCGTATTTCTGATTTTTTCTTTCTCCGAACAGACGGATTCTTCCTGA

Coding sequence (CDS)

ATGCCGATCGCAGATTCAAGTTTTATCTTCACGGGCCTCTCTGCCCTACCTCATCCCCTACTTCTCAGCAACAACAATGCCAGAAAATTCGGGACCACATCGGCAAAACGAACCGGCGATTCCGATTCCATTTCATCGACGCAACTCAAATTTCCATCGCTGAGAGTTGCAAATCCACTTCTCGCCCGATCTGTCGTTGCGGTACTCGGATTAGGGTTCGTCGATGCAGGGTACAGTGGCGATTGGTCTAGAATTGGCGCCATTACCAAGGAAACTGAAGATTTGTTGAAGATTGGAGCTTTCTTGGTGGTTCCCTTCTGCGTATTTCTGATTTTTTCTTTCTCCGAACAGACGGATTCTTCCTGA

Protein sequence

MPIADSSFIFTGLSALPHPLLLSNNNARKFGTTSAKRTGDSDSISSTQLKFPSLRVANPLLARSVVAVLGLGFVDAGYSGDWSRIGAITKETEDLLKIGAFLVVPFCVFLIFSFSEQTDSS

Homology

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BLAST of Carg14071 vs. NCBI nr
Match: XP_022933449.1 (uncharacterized protein LOC111440861 [Cucurbita moschata])

HSP 1 Score: 236.9 bits (603), Expect = 3.6e-59
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 1   MPIADSSFIFTGLSALPHPLLLSNNNARKFGTTSAKRTGDSDSISSTQLKFPSLRVANPL 60
           MPIADSSFIFTGLSALPHPLLLSNNNARKFGTTSAKRTGDSDSISSTQLKFPSLRVANPL
Sbjct: 1   MPIADSSFIFTGLSALPHPLLLSNNNARKFGTTSAKRTGDSDSISSTQLKFPSLRVANPL 60

Query: 61  LARSVVAVLGLGFVDAGYSGDWSRIGAITKETEDLLKIGAFLVVPFCVFLIFSFSEQTDS 120
           LARSVVAVLGLGFVDAGYSGDWSRIGAITKETEDLLKIGAFLVVPFCVFLIFSFSEQTDS
Sbjct: 61  LARSVVAVLGLGFVDAGYSGDWSRIGAITKETEDLLKIGAFLVVPFCVFLIFSFSEQTDS 120

Query: 121 S 122
           S
Sbjct: 121 S 121

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BLAST of Carg14071 vs. NCBI nr
Match: XP_023004836.1 (uncharacterized protein LOC111498016 [Cucurbita maxima])

HSP 1 Score: 233.4 bits (594), Expect = 4.0e-58
Identity = 118/121 (97.52%), Postives = 120/121 (99.17%), Query Frame = 0


Query: 1   MPIADSSFIFTGLSALPHPLLLSNNNARKFGTTSAKRTGDSDSISSTQLKFPSLRVANPL 60
           MPIADSSFIFTGLSALPHPL+LSNNNARKFGTTSAKRTGDSDSISSTQLKFPSLRV+NPL
Sbjct: 1   MPIADSSFIFTGLSALPHPLILSNNNARKFGTTSAKRTGDSDSISSTQLKFPSLRVSNPL 60

Query: 61  LARSVVAVLGLGFVDAGYSGDWSRIGAITKETEDLLKIGAFLVVPFCVFLIFSFSEQTDS 120
           LARSVVAVLGLGFVDAGYSGDWSRIGAITKETED LKIGAFLVVPFCVFLIFSFSEQTDS
Sbjct: 61  LARSVVAVLGLGFVDAGYSGDWSRIGAITKETEDFLKIGAFLVVPFCVFLIFSFSEQTDS 120

Query: 121 S 122
           S
Sbjct: 121 S 121

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BLAST of Carg14071 vs. NCBI nr
Match: XP_023531156.1 (uncharacterized protein LOC111793484 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 230.7 bits (587), Expect = 2.6e-57
Identity = 120/123 (97.56%), Postives = 121/123 (98.37%), Query Frame = 0


Query: 1   MPIADSSFIFTGLSALPHPLLLSNNNARKFGTTSAKRTG--DSDSISSTQLKFPSLRVAN 60
           MPIADS+FIFTGLSALPHPLLLSNNNARKFGTTSAKRTG  DSDSISSTQLKFPSLRVAN
Sbjct: 1   MPIADSTFIFTGLSALPHPLLLSNNNARKFGTTSAKRTGDSDSDSISSTQLKFPSLRVAN 60

Query: 61  PLLARSVVAVLGLGFVDAGYSGDWSRIGAITKETEDLLKIGAFLVVPFCVFLIFSFSEQT 120
           PLLARSVVAVLGLGFVDAGYSGDWSRIGAITKETEDLLKIGAFLVVPFCVFLIFSFSEQT
Sbjct: 61  PLLARSVVAVLGLGFVDAGYSGDWSRIGAITKETEDLLKIGAFLVVPFCVFLIFSFSEQT 120

Query: 121 DSS 122
           DSS
Sbjct: 121 DSS 123

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BLAST of Carg14071 vs. NCBI nr
Match: XP_008443827.1 (PREDICTED: uncharacterized protein LOC103487329 [Cucumis melo])

HSP 1 Score: 188.3 bits (477), Expect = 1.5e-44
Identity = 101/127 (79.53%), Postives = 111/127 (87.40%), Query Frame = 0


Query: 1   MPIADSSFIFTGLSALPHPLLLS--NNNARKFGTTSAKRTGDSDSISST---QLKFPSLR 60
           M + DSSFIF G+SA+PHPLL +  NNN RKFG TSAKRT DSDS SST   Q KFPSLR
Sbjct: 1   MAMVDSSFIFIGISAVPHPLLNNNKNNNGRKFGITSAKRTQDSDSTSSTQPNQFKFPSLR 60

Query: 61  VANPLLARSVVAVLGLGFVDAGYSGDWSRIGAITKETEDLLKIGAFLVVPFCVFLIFSFS 120
           V+NPLLARSVV+VLGLGFVDAGYSGDWSRIGAITKETE+LLKIGAFLVVPFCVFL+FSFS
Sbjct: 61  VSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEELLKIGAFLVVPFCVFLVFSFS 120

Query: 121 E-QTDSS 122
           +  +DSS
Sbjct: 121 KFDSDSS 127

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BLAST of Carg14071 vs. NCBI nr
Match: XP_004146667.1 (PREDICTED: uncharacterized protein LOC101206545 [Cucumis sativus] >KGN65187.1 hypothetical protein Csa_1G257930 [Cucumis sativus])

HSP 1 Score: 182.2 bits (461), Expect = 1.1e-42
Identity = 100/127 (78.74%), Postives = 108/127 (85.04%), Query Frame = 0


Query: 1   MPIADSSFIFTGLSALPHPLLLSNNNARKFGTTSAKRT--GDSDSISST---QLKFPSLR 60
           M + DSSFIF G S +PHP LL+NNN RKFG TSAKRT   DSDS SST   Q KFPSLR
Sbjct: 1   MAMVDSSFIFIGFSPVPHP-LLNNNNGRKFGITSAKRTQDSDSDSASSTQPNQFKFPSLR 60

Query: 61  VANPLLARSVVAVLGLGFVDAGYSGDWSRIGAITKETEDLLKIGAFLVVPFCVFLIFSFS 120
           V+NPLLARSVV+VLGLGFVDAGYSGDWSRIGAITKETEDLLKIGA LVVPFCVFL+FSFS
Sbjct: 61  VSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEDLLKIGALLVVPFCVFLVFSFS 120

Query: 121 E-QTDSS 122
           +  +DSS
Sbjct: 121 KYDSDSS 126

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BLAST of Carg14071 vs. TAIR10
Match: AT4G30845.1 (unknown protein)

HSP 1 Score: 100.5 bits (249), Expect = 7.4e-22
Identity = 51/98 (52.04%), Postives = 66/98 (67.35%), Query Frame = 0


Query: 23  SNNNARKF--GTTSAKRTGDSDSISSTQLKFPSLRVANPLLARSVVAVLGLGFVDAGYSG 82
           ++N  R F  G T   +  D    S+ +     ++V N ++ARS +AVL LGF+DAGYSG
Sbjct: 15  NDNKLRSFANGVTIMSKRRDFSEKSNEERPILRIKVPNTIVARSAIAVLSLGFIDAGYSG 74

Query: 83  DWSRIGAITKETEDLLKIGAFLVVPFCVFLIFSFSEQT 119
           DWSRIG I+KETE+LLKI AFLVVP C+FL  SFS  +
Sbjct: 75  DWSRIGVISKETEELLKIAAFLVVPLCIFLALSFSNDS 112

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BLAST of Carg14071 vs. TrEMBL
Match: tr|A0A1S3B903|A0A1S3B903_CUCME (uncharacterized protein LOC103487329 OS=Cucumis melo OX=3656 GN=LOC103487329 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 9.8e-45
Identity = 101/127 (79.53%), Postives = 111/127 (87.40%), Query Frame = 0


Query: 1   MPIADSSFIFTGLSALPHPLLLS--NNNARKFGTTSAKRTGDSDSISST---QLKFPSLR 60
           M + DSSFIF G+SA+PHPLL +  NNN RKFG TSAKRT DSDS SST   Q KFPSLR
Sbjct: 1   MAMVDSSFIFIGISAVPHPLLNNNKNNNGRKFGITSAKRTQDSDSTSSTQPNQFKFPSLR 60

Query: 61  VANPLLARSVVAVLGLGFVDAGYSGDWSRIGAITKETEDLLKIGAFLVVPFCVFLIFSFS 120
           V+NPLLARSVV+VLGLGFVDAGYSGDWSRIGAITKETE+LLKIGAFLVVPFCVFL+FSFS
Sbjct: 61  VSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEELLKIGAFLVVPFCVFLVFSFS 120

Query: 121 E-QTDSS 122
           +  +DSS
Sbjct: 121 KFDSDSS 127

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BLAST of Carg14071 vs. TrEMBL
Match: tr|A0A0A0LWH4|A0A0A0LWH4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G257930 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 7.0e-43
Identity = 100/127 (78.74%), Postives = 108/127 (85.04%), Query Frame = 0


Query: 1   MPIADSSFIFTGLSALPHPLLLSNNNARKFGTTSAKRT--GDSDSISST---QLKFPSLR 60
           M + DSSFIF G S +PHP LL+NNN RKFG TSAKRT   DSDS SST   Q KFPSLR
Sbjct: 1   MAMVDSSFIFIGFSPVPHP-LLNNNNGRKFGITSAKRTQDSDSDSASSTQPNQFKFPSLR 60

Query: 61  VANPLLARSVVAVLGLGFVDAGYSGDWSRIGAITKETEDLLKIGAFLVVPFCVFLIFSFS 120
           V+NPLLARSVV+VLGLGFVDAGYSGDWSRIGAITKETEDLLKIGA LVVPFCVFL+FSFS
Sbjct: 61  VSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEDLLKIGALLVVPFCVFLVFSFS 120

Query: 121 E-QTDSS 122
           +  +DSS
Sbjct: 121 KYDSDSS 126

[Close]

BLAST of Carg14071 vs. TrEMBL
Match: tr|A0A2N9HLC9|A0A2N9HLC9_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS40677 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 1.3e-28
Identity = 71/121 (58.68%), Postives = 89/121 (73.55%), Query Frame = 0


Query: 1   MPIADSSFIFTGLSAL-PHPLLLSNNNARKFGTTSAKRTGDSDSISSTQLKFPSLRVANP 60
           M + + SFIF  LS L  +P   +  N RKFG T AK+   S++ SS Q     LRV+NP
Sbjct: 18  MAVTEKSFIFNNLSFLTSYP--FAKTNGRKFGITLAKKRDLSENSSSQQENIFPLRVSNP 77

Query: 61  LLARSVVAVLGLGFVDAGYSGDWSRIGAITKETEDLLKIGAFLVVPFCVFLIFSFSEQTD 120
           +LARSVVAVLGLGF+D+GYSGDWSRIG I+KETEDLLK  AF+VVP C+FLIFS S++ +
Sbjct: 78  ILARSVVAVLGLGFIDSGYSGDWSRIGVISKETEDLLKFAAFIVVPLCIFLIFSISKEPE 136

[Close]

BLAST of Carg14071 vs. TrEMBL
Match: tr|A0A2I4EH16|A0A2I4EH16_9ROSI (uncharacterized protein LOC108989510 OS=Juglans regia OX=51240 GN=LOC108989510 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 5.4e-27
Identity = 69/121 (57.02%), Postives = 90/121 (74.38%), Query Frame = 0


Query: 1   MPIADSSFIFTGLSALPHPLLLSNNNARKFGTTSAKRTGDSDSISSTQLK--FPSLRVAN 60
           M + + SFIF GL++ P        N R+FG   A +    ++ ++TQ +  FP LRV+N
Sbjct: 1   MLVIEKSFIFNGLTSYP----FLKTNGREFGIKLASKRDLPENSTTTQQENIFP-LRVSN 60

Query: 61  PLLARSVVAVLGLGFVDAGYSGDWSRIGAITKETEDLLKIGAFLVVPFCVFLIFSFSEQT 120
           P+LARSVVAVLGLGF+DAGYSGDWSRIG I+KETEDLLK+ AF+VVP C+FLIFSFS++ 
Sbjct: 61  PVLARSVVAVLGLGFIDAGYSGDWSRIGVISKETEDLLKLAAFVVVPLCIFLIFSFSKEP 116

[Close]

BLAST of Carg14071 vs. TrEMBL
Match: tr|A0A2P6QU67|A0A2P6QU67_ROSCH (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr4g0405451 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 7.1e-27
Identity = 71/122 (58.20%), Postives = 85/122 (69.67%), Query Frame = 0


Query: 1   MPIADSSFIFTGLSALPHPLLLSNNNARKFGTTSAKRTG---DSDSISSTQLKFPSLRVA 60
           M +A  S IF  LS    P L    N R+FGT  AKR     ++ S    +  FP LRV+
Sbjct: 1   MFVAGKSAIFNKLS----PYLFVKKNGREFGTILAKRRDLPPENPSTQGGKFVFPPLRVS 60

Query: 61  NPLLARSVVAVLGLGFVDAGYSGDWSRIGAITKETEDLLKIGAFLVVPFCVFLIFSFSEQ 120
           N +LARSVVAVLGLGF+DAGYSGDWSRIG I+KE EDLLK+ AFLVVPFC+FLIFS S++
Sbjct: 61  NTILARSVVAVLGLGFIDAGYSGDWSRIGVISKEIEDLLKVAAFLVVPFCLFLIFSISKE 118

The following BLAST results are available for this feature:

BLAST of Carg14071 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022933449.1	3.6e-59	100.00	uncharacterized protein LOC111440861 [Cucurbita moschata]	[more]
XP_023004836.1	4.0e-58	97.52	uncharacterized protein LOC111498016 [Cucurbita maxima]	[more]
XP_023531156.1	2.6e-57	97.56	uncharacterized protein LOC111793484 [Cucurbita pepo subsp. pepo]	[more]
XP_008443827.1	1.5e-44	79.53	PREDICTED: uncharacterized protein LOC103487329 [Cucumis melo]	[more]
XP_004146667.1	1.1e-42	78.74	PREDICTED: uncharacterized protein LOC101206545 [Cucumis sativus] >KGN65187.1 hy...	[more]

BLAST of Carg14071 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G30845.1	7.4e-22	52.04	unknown protein	[more]

BLAST of Carg14071 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg14071 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3B903\|A0A1S3B903_CUCME	9.8e-45	79.53	uncharacterized protein LOC103487329 OS=Cucumis melo OX=3656 GN=LOC103487329 PE=...	[more]
tr\|A0A0A0LWH4\|A0A0A0LWH4_CUCSA	7.0e-43	78.74	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G257930 PE=4 SV=1	[more]
tr\|A0A2N9HLC9\|A0A2N9HLC9_FAGSY	1.3e-28	58.68	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS40677 PE=4 SV=1	[more]
tr\|A0A2I4EH16\|A0A2I4EH16_9ROSI	5.4e-27	57.02	uncharacterized protein LOC108989510 OS=Juglans regia OX=51240 GN=LOC108989510 P...	[more]
tr\|A0A2P6QU67\|A0A2P6QU67_ROSCH	7.1e-27	58.20	Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr4g0405451 PE=4...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg14071-RA	Carg14071-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR38389	FAMILY NOT NAMED	coord: 23..120

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg14071	Cla018756	Watermelon (97103) v1	carwmB0507
Carg14071	Csa1G257930	Cucumber (Chinese Long) v2	carcuB0532
Carg14071	MELO3C010198	Melon (DHL92) v3.5.1	carmeB0509
Carg14071	ClCG06G012660	Watermelon (Charleston Gray)	carwcgB0496
Carg14071	CSPI01G17990	Wild cucumber (PI 183967)	carcpiB0539
Carg14071	Cucsa.170760	Cucumber (Gy14) v1	carcgyB0581
Carg14071	Lsi06G010810	Bottle gourd (USVL1VR-Ls)	carlsiB463
Carg14071	Cp4.1LG04g12610	Cucurbita pepo (Zucchini)	carcpeB0717
Carg14071	CsGy1G018060	Cucumber (Gy14) v2	carcgybB0508
Carg14071	MELO3C010198.2	Melon (DHL92) v3.6.1	carmedB0515
Carg14071	CsaV3_1G029210	Cucumber (Chinese Long) v3	carcucB0537
Carg14071	Cla97C06G121880	Watermelon (97103) v2	carwmbB0534
Carg14071	Bhi02G000657	Wax gourd	carwgoB0620

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg14071	Watermelon (97103) v2	carwmbB0530
Carg14071	Wax gourd	carwgoB0616
Carg14071	Silver-seed gourd	carcarB151
Carg14071	Silver-seed gourd	carcarB493
Carg14071	Cucumber (Gy14) v2	carcgybB0510
Carg14071	Cucumber (Gy14) v1	carcgyB0578
Carg14071	Cucurbita maxima (Rimu)	carcmaB0709
Carg14071	Cucurbita maxima (Rimu)	carcmaB0710
Carg14071	Cucurbita maxima (Rimu)	carcmaB0711
Carg14071	Cucurbita moschata (Rifu)	carcmoB0688
Carg14071	Cucurbita moschata (Rifu)	carcmoB0689
Carg14071	Cucurbita moschata (Rifu)	carcmoB0690
Carg14071	Cucurbita pepo (Zucchini)	carcpeB0715
Carg14071	Wild cucumber (PI 183967)	carcpiB0540
Carg14071	Cucumber (Chinese Long) v2	carcuB0531
Carg14071	Cucumber (Chinese Long) v2	carcuB0533
Carg14071	Cucumber (Chinese Long) v3	carcucB0538
Carg14071	Bottle gourd (USVL1VR-Ls)	carlsiB459
Carg14071	Melon (DHL92) v3.5.1	carmeB0511
Carg14071	Melon (DHL92) v3.6.1	carmedB0517
Carg14071	Watermelon (Charleston Gray)	carwcgB0491
Carg14071	Watermelon (97103) v1	carwmB0506