Cucsa.169400 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.169400
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	SAUR-like auxin-responsive protein family
Location	scaffold01163 : 256863 .. 257518 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATACTGTTTCTTCTAGAAACCAATGTGGTGTTCCCAAAGGCCATATCGCAGTTTATGTGGGAGATATTGAAAGAAAGCGGTTTGTGGTTCCACTATCATACTTGAACCATCCTTCTTTTTCAGCTTTGCTCAAGAGTGCAGAAGAAGAATTTGGATTTAAACATCCAACTGGAGGTTTGACAATTCCTTGCAGAGAAGATGTCTTCATCAATCTCACATCCAGGCTGCAAATATCCTGAAAGGGAGAAGAAAAACCTTTGTCCACACAATTTTGTCAGATTCCCTCCATTTTTTCCCCTTAGTTGAGAGTAGAAATCATTAATCAATGTATAGTTAGCTTCAAAGTGTTAATGATCGGGTAGCTGAAAGGTGATAGCACATTGCCCATCTACCTGAACATCATTTACACAACTTACAATTCAAATCTGTAAACATGGAAACAGAAATACAGAGTCATATTATCTTACTAAAGGACTTCCCTTCTTGGTGAATTCTTCAACATTCATAAATTTTtAAGTTTTtCCATTCAATTCCCATGAAAAGTTATTTGGATATATCATATTACAAATCATTTTCCCTGATGGCACTCGTAAGATGTATAGTAATCAGAAAATTAAAAATGTTCTCATTGAAAGGACACCATTGTCATTAA

mRNA sequence

ATGCATACTGTTTCTTCTAGAAACCAATGTGGTGTTCCCAAAGGCCATATCGCAGTTTATGTGGGAGATATTGAAAGAAAGCGGTTTGTGGTTCCACTATCATACTTGAACCATCCTTCTTTTTCAGCTTTGCTCAAGAGTGCAGAAGAAGAATTTGGATTTAAACATCCAACTGGAGGTTTGACAATTCCTTGCAGAGAAGATCTTCAAAGTGTTAATGATCGGGTAGCTGAAAGAAAATTAAAAATGTTCTCATTGAAAGGACACCATTGTCATTAA

Coding sequence (CDS)

ATGCATACTGTTTCTTCTAGAAACCAATGTGGTGTTCCCAAAGGCCATATCGCAGTTTATGTGGGAGATATTGAAAGAAAGCGGTTTGTGGTTCCACTATCATACTTGAACCATCCTTCTTTTTCAGCTTTGCTCAAGAGTGCAGAAGAAGAATTTGGATTTAAACATCCAACTGGAGGTTTGACAATTCCTTGCAGAGAAGATCTTCAAAGTGTTAATGATCGGGTAGCTGAAAGAAAATTAAAAATGTTCTCATTGAAAGGACACCATTGTCATTAA

Protein sequence

MHTVSSRNQCGVPKGHIAVYVGDIERKRFVVPLSYLNHPSFSALLKSAEEEFGFKHPTGGLTIPCREDLQSVNDRVAERKLKMFSLKGHHCH*

Homology

[Close]

BLAST of Cucsa.169400 vs. Swiss-Prot
Match: SAU23_ARATH (Auxin-responsive protein SAUR23 OS=Arabidopsis thaliana GN=SAUR23 PE=2 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 8.0e-18
Identity = 40/56 (71.43%), Postives = 47/56 (83.93%), Query Frame = 1


Query: 13 PKGHIAVYVGDIERKRFVVPLSYLNHPSFSALLKSAEEEFGFKHPTGGLTIPCRED 69
          PKG +AVYVG+ ++KR++VPLSYLN PSF ALL  +EEEFGF HP GGLTIPC ED
Sbjct: 25 PKGFLAVYVGESQKKRYLVPLSYLNQPSFQALLSKSEEEFGFDHPMGGLTIPCPED 80

[Close]

BLAST of Cucsa.169400 vs. Swiss-Prot
Match: SAU22_ARATH (Auxin-responsive protein SAUR22 OS=Arabidopsis thaliana GN=SAUR22 PE=2 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.0e-17
Identity = 39/56 (69.64%), Postives = 47/56 (83.93%), Query Frame = 1


Query: 13 PKGHIAVYVGDIERKRFVVPLSYLNHPSFSALLKSAEEEFGFKHPTGGLTIPCRED 69
          PKG +AVYVG+ ++KR++VPLSYLN PSF ALL  +E+EFGF HP GGLTIPC ED
Sbjct: 25 PKGFLAVYVGESQKKRYLVPLSYLNQPSFQALLSKSEDEFGFDHPMGGLTIPCHED 80

[Close]

BLAST of Cucsa.169400 vs. Swiss-Prot
Match: SAU20_ARATH (Auxin-responsive protein SAUR20 OS=Arabidopsis thaliana GN=SAUR20 PE=2 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.4e-17
Identity = 39/56 (69.64%), Postives = 47/56 (83.93%), Query Frame = 1


Query: 13 PKGHIAVYVGDIERKRFVVPLSYLNHPSFSALLKSAEEEFGFKHPTGGLTIPCRED 69
          PKG +AVYVG+ ++KR++VP+SYLN PSF ALL  +EEEFGF HP GGLTIPC ED
Sbjct: 25 PKGFLAVYVGESQKKRYLVPISYLNQPSFQALLSKSEEEFGFDHPMGGLTIPCPED 80

[Close]

BLAST of Cucsa.169400 vs. Swiss-Prot
Match: SAU24_ARATH (Auxin-responsive protein SAUR24 OS=Arabidopsis thaliana GN=SAUR24 PE=2 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 1.8e-17
Identity = 39/56 (69.64%), Postives = 47/56 (83.93%), Query Frame = 1


Query: 13 PKGHIAVYVGDIERKRFVVPLSYLNHPSFSALLKSAEEEFGFKHPTGGLTIPCRED 69
          PKG +AVYVG+ ++KR++VP+SYLN PSF ALL  +EEEFGF HP GGLTIPC ED
Sbjct: 25 PKGFLAVYVGESQKKRYLVPVSYLNQPSFQALLSKSEEEFGFDHPMGGLTIPCPED 80

[Close]

BLAST of Cucsa.169400 vs. Swiss-Prot
Match: SAU21_ARATH (Auxin-responsive protein SAUR21 OS=Arabidopsis thaliana GN=SAUR21 PE=2 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 2.3e-17
Identity = 40/65 (61.54%), Postives = 49/65 (75.38%), Query Frame = 1


Query: 4  VSSRNQCGVPKGHIAVYVGDIERKRFVVPLSYLNHPSFSALLKSAEEEFGFKHPTGGLTI 63
          +S       PKG +AVYVG+ ++KR++VPLSYL+ PSF ALL  +EEEFGF HP GGLTI
Sbjct: 14 LSRSTASAAPKGFLAVYVGESQKKRYLVPLSYLSQPSFQALLSKSEEEFGFDHPMGGLTI 73

Query: 64 PCRED 69
          PC ED
Sbjct: 74 PCPED 78

[Close]

BLAST of Cucsa.169400 vs. TrEMBL
Match: A0A0A0LM71_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258780 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 3.0e-32
Identity = 68/69 (98.55%), Postives = 69/69 (100.00%), Query Frame = 1


Query: 1  MHTVSSRNQCGVPKGHIAVYVGDIERKRFVVPLSYLNHPSFSALLKSAEEEFGFKHPTGG 60
          MHTVSSRNQCGVPKGHIAVYVGDIERKRFVVPLSYLNHPSFSALLKSAEEEFGFKHPTGG
Sbjct: 18 MHTVSSRNQCGVPKGHIAVYVGDIERKRFVVPLSYLNHPSFSALLKSAEEEFGFKHPTGG 77

Query: 61 LTIPCREDL 70
          LTIPCRED+
Sbjct: 78 LTIPCREDV 86

[Close]

BLAST of Cucsa.169400 vs. TrEMBL
Match: A0A0A0LPH3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258670 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 4.9e-22
Identity = 50/68 (73.53%), Postives = 59/68 (86.76%), Query Frame = 1


Query: 1  MHTVSSRNQCGVPKGHIAVYVGDIERKRFVVPLSYLNHPSFSALLKSAEEEFGFKHPTGG 60
          M +VS+R    +PKGHIAVYVG+IERKRFVVP+SYLNHP+F +LL  AEEEFGF HP+GG
Sbjct: 18 MQSVSTRCHSNIPKGHIAVYVGEIERKRFVVPVSYLNHPTFLSLLNRAEEEFGFNHPSGG 77

Query: 61 LTIPCRED 69
          LTIPC+ED
Sbjct: 78 LTIPCKED 85

[Close]

BLAST of Cucsa.169400 vs. TrEMBL
Match: A0A061DZI1_THECC (SAUR-like auxin-responsive protein family OS=Theobroma cacao GN=TCM_006725 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 6.3e-22
Identity = 50/67 (74.63%), Postives = 57/67 (85.07%), Query Frame = 1


Query: 2   HTVSSRNQCGVPKGHIAVYVGDIERKRFVVPLSYLNHPSFSALLKSAEEEFGFKHPTGGL 61
           H+  SR Q  VPKGH+AVYVG+ +RKRFVVP+SYLNHPSF+ LL  AEEEFGF HPTGGL
Sbjct: 98  HSGFSRKQPDVPKGHVAVYVGEAQRKRFVVPISYLNHPSFAELLNRAEEEFGFNHPTGGL 157

Query: 62  TIPCRED 69
           TIPC+ED
Sbjct: 158 TIPCKED 164

[Close]

BLAST of Cucsa.169400 vs. TrEMBL
Match: A0A061DZI1_THECC (SAUR-like auxin-responsive protein family OS=Theobroma cacao GN=TCM_006725 PE=4 SV=1)

HSP 1 Score: 30.4 bits (67), Expect = 1.4e+03
Identity = 12/20 (60.00%), Postives = 16/20 (80.00%), Query Frame = 1


Query: 7  RNQCGVPKGHIAVYVGDIER 27
          R +  VPKGHIA+YVG+ E+
Sbjct: 45 RERPPVPKGHIAIYVGETEK 64

HSP 2 Score: 110.5 bits (275), Expect = 1.1e-21
Identity = 51/68 (75.00%), Postives = 57/68 (83.82%), Query Frame = 1


Query: 1   MHTVSSRNQCGVPKGHIAVYVGDIERKRFVVPLSYLNHPSFSALLKSAEEEFGFKHPTGG 60
           M  +S+RNQ  VPKGHIAVYVG+I+RKRFVVP+SYL HPSF  LL  +EEEFGF HP GG
Sbjct: 126 MQAMSARNQSDVPKGHIAVYVGEIQRKRFVVPISYLKHPSFVDLLNRSEEEFGFCHPMGG 185

Query: 61  LTIPCRED 69
           LTIPCRED
Sbjct: 186 LTIPCRED 193

[Close]

BLAST of Cucsa.169400 vs. TrEMBL
Match: V4UBZ0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10030213mg PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 1.8e-21
Identity = 47/64 (73.44%), Postives = 57/64 (89.06%), Query Frame = 1


Query: 5  SSRNQCGVPKGHIAVYVGDIERKRFVVPLSYLNHPSFSALLKSAEEEFGFKHPTGGLTIP 64
          +++NQCGVPKGH+AVYVG++E+KRFVVPL+Y++HP F  LLK AEEEFGF HP G LTIP
Sbjct: 22 NAKNQCGVPKGHVAVYVGELEKKRFVVPLTYVSHPPFVDLLKRAEEEFGFHHPMGALTIP 81

Query: 65 CRED 69
          CRED
Sbjct: 82 CRED 85

[Close]

BLAST of Cucsa.169400 vs. TAIR10
Match: AT4G34800.1 (AT4G34800.1 SAUR-like auxin-responsive protein family )

HSP 1 Score: 98.6 bits (244), Expect = 2.2e-21
Identity = 46/66 (69.70%), Postives = 52/66 (78.79%), Query Frame = 1


Query: 5  SSRNQCGVPKGHIAVYVGDI--ERKRFVVPLSYLNHPSFSALLKSAEEEFGFKHPTGGLT 64
          S + Q  VPKGH+AVYVG+    +KRFVVP+SYLNHPSF  LL  AEEEFGF HP GGLT
Sbjct: 14 SQKQQSRVPKGHVAVYVGEEMESKKRFVVPISYLNHPSFQGLLSRAEEEFGFNHPIGGLT 73

Query: 65 IPCRED 69
          IPCRE+
Sbjct: 74 IPCREE 79

[Close]

BLAST of Cucsa.169400 vs. TAIR10
Match: AT4G34810.1 (AT4G34810.1 SAUR-like auxin-responsive protein family )

HSP 1 Score: 96.7 bits (239), Expect = 8.2e-21
Identity = 45/68 (66.18%), Postives = 54/68 (79.41%), Query Frame = 1


Query: 5  SSRNQCGVPKGHIAVYVGD---IERKRFVVPLSYLNHPSFSALLKSAEEEFGFKHPTGGL 64
          SS +   VPKGH+AVYVG+   +E+KRFVVP+S+LNHPSF   L  AEEEFGF HP GGL
Sbjct: 28 SSSSSDHVPKGHVAVYVGEQIEMEKKRFVVPISFLNHPSFKEFLSRAEEEFGFNHPMGGL 87

Query: 65 TIPCREDL 70
          TIPCRE++
Sbjct: 88 TIPCREEV 95

[Close]

BLAST of Cucsa.169400 vs. TAIR10
Match: AT4G34770.1 (AT4G34770.1 SAUR-like auxin-responsive protein family )

HSP 1 Score: 93.6 bits (231), Expect = 6.9e-20
Identity = 43/58 (74.14%), Postives = 47/58 (81.03%), Query Frame = 1


Query: 12 VPKGHIAVYVGDI-ERKRFVVPLSYLNHPSFSALLKSAEEEFGFKHPTGGLTIPCRED 69
          VPKGH+AVYVG+   RKRFV+P+SYLNHP F  LL  AEEEFGF HP GGLTIPC ED
Sbjct: 35 VPKGHVAVYVGETYHRKRFVIPISYLNHPLFQGLLNLAEEEFGFDHPMGGLTIPCTED 92

[Close]

BLAST of Cucsa.169400 vs. TAIR10
Match: AT4G38840.1 (AT4G38840.1 SAUR-like auxin-responsive protein family )

HSP 1 Score: 92.0 bits (227), Expect = 2.0e-19
Identity = 42/65 (64.62%), Postives = 51/65 (78.46%), Query Frame = 1


Query: 5  SSRNQCGVPKGHIAVYVGDIERKRFVVPLSYLNHPSFSALLKSAEEEFGFKHPTGGLTIP 64
          SS +   VPKG++AVYVG+   KRFVVP+SYL+ PSF  LL+ AEEEFGF HP GGLTIP
Sbjct: 26 SSSSSLDVPKGYLAVYVGEQNMKRFVVPVSYLDQPSFQDLLRKAEEEFGFDHPMGGLTIP 85

Query: 65 CREDL 70
          C E++
Sbjct: 86 CSEEI 90

[Close]

BLAST of Cucsa.169400 vs. TAIR10
Match: AT2G21210.1 (AT2G21210.1 SAUR-like auxin-responsive protein family )

HSP 1 Score: 92.0 bits (227), Expect = 2.0e-19
Identity = 40/65 (61.54%), Postives = 52/65 (80.00%), Query Frame = 1


Query: 6  SRNQCGVPKGHIAVYVGDI-ERKRFVVPLSYLNHPSFSALLKSAEEEFGFKHPTGGLTIP 65
          S N   +PKGH+AVYVG++ +++RFVVP++YL+HP F  LL+ AEEEFGF HP GGLTIP
Sbjct: 22 SSNNVAIPKGHLAVYVGEMMQKRRFVVPVTYLSHPCFQKLLRKAEEEFGFDHPMGGLTIP 81

Query: 66 CREDL 70
          C E +
Sbjct: 82 CTEQI 86

[Close]

BLAST of Cucsa.169400 vs. NCBI nr
Match: gi|449458562|ref|XP_004147016.1| (PREDICTED: auxin-induced protein 15A-like [Cucumis sativus])

HSP 1 Score: 145.6 bits (366), Expect = 4.4e-32
Identity = 68/69 (98.55%), Postives = 69/69 (100.00%), Query Frame = 1


Query: 1  MHTVSSRNQCGVPKGHIAVYVGDIERKRFVVPLSYLNHPSFSALLKSAEEEFGFKHPTGG 60
          MHTVSSRNQCGVPKGHIAVYVGDIERKRFVVPLSYLNHPSFSALLKSAEEEFGFKHPTGG
Sbjct: 18 MHTVSSRNQCGVPKGHIAVYVGDIERKRFVVPLSYLNHPSFSALLKSAEEEFGFKHPTGG 77

Query: 61 LTIPCREDL 70
          LTIPCRED+
Sbjct: 78 LTIPCREDV 86

[Close]

BLAST of Cucsa.169400 vs. NCBI nr
Match: gi|659115600|ref|XP_008457637.1| (PREDICTED: auxin-induced protein 15A-like [Cucumis melo])

HSP 1 Score: 145.6 bits (366), Expect = 4.4e-32
Identity = 68/69 (98.55%), Postives = 69/69 (100.00%), Query Frame = 1


Query: 1  MHTVSSRNQCGVPKGHIAVYVGDIERKRFVVPLSYLNHPSFSALLKSAEEEFGFKHPTGG 60
          MHTVSSRNQCGVPKGHIAVYVGDIERKRFVVPLSYLNHPSFSALLKSAEEEFGFKHPTGG
Sbjct: 18 MHTVSSRNQCGVPKGHIAVYVGDIERKRFVVPLSYLNHPSFSALLKSAEEEFGFKHPTGG 77

Query: 61 LTIPCREDL 70
          LTIPCRED+
Sbjct: 78 LTIPCREDV 86

[Close]

BLAST of Cucsa.169400 vs. NCBI nr
Match: gi|778669580|ref|XP_011649270.1| (PREDICTED: auxin-induced protein 15A-like [Cucumis sativus])

HSP 1 Score: 111.7 bits (278), Expect = 7.0e-22
Identity = 50/68 (73.53%), Postives = 59/68 (86.76%), Query Frame = 1


Query: 1  MHTVSSRNQCGVPKGHIAVYVGDIERKRFVVPLSYLNHPSFSALLKSAEEEFGFKHPTGG 60
          M +VS+R    +PKGHIAVYVG+IERKRFVVP+SYLNHP+F +LL  AEEEFGF HP+GG
Sbjct: 18 MQSVSTRCHSNIPKGHIAVYVGEIERKRFVVPVSYLNHPTFLSLLNRAEEEFGFNHPSGG 77

Query: 61 LTIPCRED 69
          LTIPC+ED
Sbjct: 78 LTIPCKED 85

[Close]

BLAST of Cucsa.169400 vs. NCBI nr
Match: gi|590684897|ref|XP_007041961.1| (SAUR-like auxin-responsive protein family [Theobroma cacao])

HSP 1 Score: 111.3 bits (277), Expect = 9.1e-22
Identity = 50/67 (74.63%), Postives = 57/67 (85.07%), Query Frame = 1


Query: 2   HTVSSRNQCGVPKGHIAVYVGDIERKRFVVPLSYLNHPSFSALLKSAEEEFGFKHPTGGL 61
           H+  SR Q  VPKGH+AVYVG+ +RKRFVVP+SYLNHPSF+ LL  AEEEFGF HPTGGL
Sbjct: 98  HSGFSRKQPDVPKGHVAVYVGEAQRKRFVVPISYLNHPSFAELLNRAEEEFGFNHPTGGL 157

Query: 62  TIPCRED 69
           TIPC+ED
Sbjct: 158 TIPCKED 164

[Close]

BLAST of Cucsa.169400 vs. NCBI nr
Match: gi|590684897|ref|XP_007041961.1| (SAUR-like auxin-responsive protein family [Theobroma cacao])

HSP 1 Score: 30.4 bits (67), Expect = 2.0e+03
Identity = 12/20 (60.00%), Postives = 16/20 (80.00%), Query Frame = 1


Query: 7  RNQCGVPKGHIAVYVGDIER 27
          R +  VPKGHIA+YVG+ E+
Sbjct: 45 RERPPVPKGHIAIYVGETEK 64

HSP 2 Score: 110.5 bits (275), Expect = 1.6e-21
Identity = 51/68 (75.00%), Postives = 57/68 (83.82%), Query Frame = 1


Query: 1  MHTVSSRNQCGVPKGHIAVYVGDIERKRFVVPLSYLNHPSFSALLKSAEEEFGFKHPTGG 60
          M  +S+RNQ  VPKGHIAVYVG+I+RKRFVVP+SYL HPSF  LL  +EEEFGF HP GG
Sbjct: 18 MQAMSARNQSDVPKGHIAVYVGEIQRKRFVVPISYLKHPSFVDLLNRSEEEFGFCHPMGG 77

Query: 61 LTIPCRED 69
          LTIPCRED
Sbjct: 78 LTIPCRED 85

The following BLAST results are available for this feature:

BLAST of Cucsa.169400 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SAU23_ARATH	8.0e-18	71.43	Auxin-responsive protein SAUR23 OS=Arabidopsis thaliana GN=SAUR23 PE=2 SV=1	[more]
SAU22_ARATH	1.0e-17	69.64	Auxin-responsive protein SAUR22 OS=Arabidopsis thaliana GN=SAUR22 PE=2 SV=1	[more]
SAU20_ARATH	1.4e-17	69.64	Auxin-responsive protein SAUR20 OS=Arabidopsis thaliana GN=SAUR20 PE=2 SV=1	[more]
SAU24_ARATH	1.8e-17	69.64	Auxin-responsive protein SAUR24 OS=Arabidopsis thaliana GN=SAUR24 PE=2 SV=1	[more]
SAU21_ARATH	2.3e-17	61.54	Auxin-responsive protein SAUR21 OS=Arabidopsis thaliana GN=SAUR21 PE=2 SV=1	[more]

BLAST of Cucsa.169400 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LM71_CUCSA	3.0e-32	98.55	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258780 PE=4 SV=1	[more]
A0A0A0LPH3_CUCSA	4.9e-22	73.53	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258670 PE=4 SV=1	[more]
A0A061DZI1_THECC	6.3e-22	74.63	SAUR-like auxin-responsive protein family OS=Theobroma cacao GN=TCM_006725 PE=4 ...	[more]
A0A061DZI1_THECC	1.4e+03	60.00	SAUR-like auxin-responsive protein family OS=Theobroma cacao GN=TCM_006725 PE=4 ...	[more]
V4UBZ0_9ROSI	1.8e-21	73.44	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10030213mg PE=4 SV=1	[more]

BLAST of Cucsa.169400 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G34800.1	2.2e-21	69.70	SAUR-like auxin-responsive protein family	[more]
AT4G34810.1	8.2e-21	66.18	SAUR-like auxin-responsive protein family	[more]
AT4G34770.1	6.9e-20	74.14	SAUR-like auxin-responsive protein family	[more]
AT4G38840.1	2.0e-19	64.62	SAUR-like auxin-responsive protein family	[more]
AT2G21210.1	2.0e-19	61.54	SAUR-like auxin-responsive protein family	[more]

BLAST of Cucsa.169400 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449458562\|ref\|XP_004147016.1\|	4.4e-32	98.55	PREDICTED: auxin-induced protein 15A-like [Cucumis sativus]	[more]
gi\|659115600\|ref\|XP_008457637.1\|	4.4e-32	98.55	PREDICTED: auxin-induced protein 15A-like [Cucumis melo]	[more]
gi\|778669580\|ref\|XP_011649270.1\|	7.0e-22	73.53	PREDICTED: auxin-induced protein 15A-like [Cucumis sativus]	[more]
gi\|590684897\|ref\|XP_007041961.1\|	9.1e-22	74.63	SAUR-like auxin-responsive protein family [Theobroma cacao]	[more]
gi\|590684897\|ref\|XP_007041961.1\|	2.0e+03	60.00	SAUR-like auxin-responsive protein family [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003676	SAUR_fam

Vocabulary: **Biological Process**
Term	Definition
GO:0009733	response to auxin

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009733	response to auxin
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.169400.1	Cucsa.169400.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003676	Small auxin-up RNA	PFAM	PF02519	Auxin_inducible	coord: 8..68 score: 8.0
None	No IPR available	PANTHER	PTHR31929	FAMILY NOT NAMED	coord: 5..68 score: 1.0
None	No IPR available	PANTHER	PTHR31929:SF3	SUBFAMILY NOT NAMED	coord: 5..68 score: 1.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.169400	Cla016634	Watermelon (97103) v1	cgywmB323
Cucsa.169400	Csa2G258780	Cucumber (Chinese Long) v2	cgycuB257
Cucsa.169400	MELO3C020769	Melon (DHL92) v3.5.1	cgymeB301
Cucsa.169400	CmaCh20G007840	Cucurbita maxima (Rimu)	cgycmaB0479
Cucsa.169400	CmoCh02G003410	Cucurbita moschata (Rifu)	cgycmoB0483
Cucsa.169400	CmoCh20G007880	Cucurbita moschata (Rifu)	cgycmoB0482
Cucsa.169400	Lsi10G004420	Bottle gourd (USVL1VR-Ls)	cgylsiB281
Cucsa.169400	CsaV3_2G015560	Cucumber (Chinese Long) v3	cgycucB270

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.169400	Cucumber (Gy14) v1	cgycgyB107
Cucsa.169400	Cucurbita maxima (Rimu)	cgycmaB0480
Cucsa.169400	Wild cucumber (PI 183967)	cgycpiB265
Cucsa.169400	Wild cucumber (PI 183967)	cgycpiB266
Cucsa.169400	Cucumber (Chinese Long) v2	cgycuB258
Cucsa.169400	Melon (DHL92) v3.5.1	cgymeB302
Cucsa.169400	Watermelon (Charleston Gray)	cgywcgB301
Cucsa.169400	Watermelon (97103) v1	cgywmB321
Cucsa.169400	Cucurbita pepo (Zucchini)	cgycpeB0466
Cucsa.169400	Cucurbita pepo (Zucchini)	cgycpeB0467
Cucsa.169400	Melon (DHL92) v3.6.1	cgymedB294
Cucsa.169400	Watermelon (97103) v2	cgywmbB304
Cucsa.169400	Watermelon (97103) v2	cgywmbB305
Cucsa.169400	Wax gourd	cgywgoB348