Cucsa.156840 (gene) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GATAGAGTAGTGGCGATCGACGGACGCGAATTTTGCCTCCCAATTGTCTCCTTTCAGCTCTGAGGTCATTATTGATTGGTTAATTCGCATTTAGCCATGTCTACCAGTGAACTCGCGTGCGCGTACGCCGCCCTGGCTCTTCACGATGATGGAATCGCAATCACTGTACGAACCATTATCTTTCTTTGTTTTTATCTTTTTTTTTTTCATTCTTTGGATTATTTGATGCCTGATTAATTTGCATATTGTGTATAGGCGGAAAAGATTGCAGCCGTTGTAGCAGCTGCGGGGCTCTGTGTGGAATCTTACTGGCCTAGCTTGTTTGCTAAATTGGCCGAGAAGAGGAACATTGGGGACCTTCTTCTTAATGTTGGCTGTGGAGGTGGCGCTGCGGCTTCTGTGGCTGTAGCTGCTCCTACCGCCAGTGCTGCTGCCGCTCCTGCCATCGAGGAAAAGAGGGTATGCGGATGAATCTTTAACCGTTCTTCATTTTGAAAGTCTCCTTTACTTCTCTGTCTGCTAGCTCTAACTTTCCATTTACGCATGATTTTGAACAAGGGTCTTTTTCGTATATATATACTCACATAACACACATCCTAATACTAGCTAGTTACTGCCAAATCAGTTGACTACGAAAAATTGAACTGTTTAACTGTTGCAAATATAGGTTTTTTTTTTCTTGCAACCAACCGTTAGGTAGTTCATAATATTCCTTTGAACTTTGGAAGTTAAGGATTTCATGTATCCAAGAGATTCAATAAAAAACTGAAAATTGATGAGGGTAATTTGTACTTTTGGAAATTTTAAGTTATTTTCGTTGATTGAGATATTAGTGACTTAGATCTTTATCGTTGCTTTAGTTTCATTCGCCTCGTTGTTCCTTTTTTGTCAATTGTTCATTTAAGCCAATTGTGCAGGAGGAGCCAAAGGAGGAGAGCGATGATGACATGGGATTCAGCTTATTCGATTAAGAGGCTTTCTTTATTTTGTAGGATTTTAACAGGAAACTATTTGGGTGGCTAGCTTAATTTTGATTTTTCGCTACTAATTTATCTCAAGATTTGTCTCTTTAATTGGGAGTTTTGAGTTTTGATTTGCCTTCAATGTACCGGTAACTGCATATTTTCATTCTTTTTTCTTAATTACTCCACATTGCAATGAGATCAAAATTTATGAGAGGAGTTATTTTGGTTAAACCCGGGAACCACGTTTCTCGGTTGCAATGAGATCAAAATTTATGAGAGGAGTTATTTGGTTAAACCCGGGAACCACGTTTCTTGGTTTTTGTTTTCTAGGTTTAGTTGATAATCACTCTCTGAAATTACTTATTTTTCATTTTGAATTCTCCTCCTCGGTGTAAATTCTTATTGAAAATGATATTGATGAAAACTCATTGATATC GATAGAGTAGTGGCGATCGACGGACGCGAATTTTGCCTCCCAATTGTCTCCTTTCAGCTCTGAGGTCATTATTGATTGGTTAATTCGCATTTAGCCATGTCTACCAGTGAACTCGCGTGCGCGTACGCCGCCCTGGCTCTTCACGATGATGGAATCGCAATCACTGCGGAAAAGATTGCAGCCGTTGTAGCAGCTGCGGGGCTCTGTGTGGAATCTTACTGGCCTAGCTTGTTTGCTAAATTGGCCGAGAAGAGGAACATTGGGGACCTTCTTCTTAATGTTGGCTGTGGAGGTGGCgctgcggcttctgtggctgtagctgctcctaccgccagtgctgctgccgctcctgcCATCGAGGAAAAGAGGGAGGAGCCAAAGGAGGAGAGCGATGATGACATGGGATTCAGCTTATTCGATTAAGAGGCTTTCTTTATTTTGTAGGATTTTAACAGGAAACTATTTGGGTGGCTAGCTTAATTTTGATTTTTCGCTACTAATTTATCTCAAGATTTGTCTCTTTAATTGGGAGTTTTGAGTTTTGATTTGCCTTCAATGTACCGGTAACTGCATATTTTCATTCTTTTTTCTTAATTACTCCACATTGCAATGAGATCAAAATTTATGAGAGGAGTTATTTTGGTTAAACCCGGGAACCACGTTTCTCGGTTGCAATGAGATCAAAATTTATGAGAGGAGTTATTTGGTTAAACCCGGGAACCACGTTTCTTGGTTTTTGTTTTCTAGGTTTAGTTGATAATCACTCTCTGAAATTACTTATTTTTCATTTTGAATTCTCCTCCTCGGTGTAAATTCTTATTGAAAATGATATTGATGAAAACTCATTGATATC ATGTCTACCAGTGAACTCGCGTGCGCGTACGCCGCCCTGGCTCTTCACGATGATGGAATCGCAATCACTGCGGAAAAGATTGCAGCCGTTGTAGCAGCTGCGGGGCTCTGTGTGGAATCTTACTGGCCTAGCTTGTTTGCTAAATTGGCCGAGAAGAGGAACATTGGGGACCTTCTTCTTAATGTTGGCTGTGGAGGTGGCGCTGCGGCTTCTGTGGCTGTAGCTGCTCCTACCGCCAGTGCTGCTGCCGCTCCTGCCATCGAGGAAAAGAGGGAGGAGCCAAAGGAGGAGAGCGATGATGACATGGGATTCAGCTTATTCGATTAA MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLLNVGCGGGAAASVAVAAPTASAAAAPAIEEKREEPKEESDDDMGFSLFD*
BLAST of Cucsa.156840 vs. Swiss-Prot
Match: RLA1_MAIZE (60S acidic ribosomal protein P1 OS=Zea mays GN=RPP1A PE=1 SV=1) HSP 1 Score: 153.3 bits (386), Expect = 1.5e-36 Identity = 81/110 (73.64%), Postives = 92/110 (83.64%), Query Frame = 1
BLAST of Cucsa.156840 vs. Swiss-Prot
Match: RLA13_ARATH (60S acidic ribosomal protein P1-3 OS=Arabidopsis thaliana GN=RPP1C PE=1 SV=2) HSP 1 Score: 141.7 bits (356), Expect = 4.6e-33 Identity = 74/113 (65.49%), Postives = 89/113 (78.76%), Query Frame = 1
BLAST of Cucsa.156840 vs. Swiss-Prot
Match: RLA11_ARATH (60S acidic ribosomal protein P1-1 OS=Arabidopsis thaliana GN=RPP1A PE=2 SV=2) HSP 1 Score: 141.7 bits (356), Expect = 4.6e-33 Identity = 74/112 (66.07%), Postives = 88/112 (78.57%), Query Frame = 1
BLAST of Cucsa.156840 vs. Swiss-Prot
Match: RLA12_ARATH (60S acidic ribosomal protein P1-2 OS=Arabidopsis thaliana GN=RPP1B PE=1 SV=2) HSP 1 Score: 137.5 bits (345), Expect = 8.7e-32 Identity = 72/113 (63.72%), Postives = 89/113 (78.76%), Query Frame = 1
BLAST of Cucsa.156840 vs. Swiss-Prot
Match: RLA1_CHLRE (60S acidic ribosomal protein P1 OS=Chlamydomonas reinhardtii PE=3 SV=1) HSP 1 Score: 124.0 bits (310), Expect = 1.0e-27 Identity = 66/109 (60.55%), Postives = 78/109 (71.56%), Query Frame = 1
BLAST of Cucsa.156840 vs. TrEMBL
Match: A0A0A0LTV1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G000010 PE=3 SV=1) HSP 1 Score: 211.8 bits (538), Expect = 4.0e-52 Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 1
BLAST of Cucsa.156840 vs. TrEMBL
Match: A0A059DF41_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A01408 PE=3 SV=1) HSP 1 Score: 163.7 bits (413), Expect = 1.3e-37 Identity = 85/112 (75.89%), Postives = 93/112 (83.04%), Query Frame = 1
BLAST of Cucsa.156840 vs. TrEMBL
Match: A0A068U5S5_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00041412001 PE=3 SV=1) HSP 1 Score: 162.9 bits (411), Expect = 2.2e-37 Identity = 86/114 (75.44%), Postives = 94/114 (82.46%), Query Frame = 1
BLAST of Cucsa.156840 vs. TrEMBL
Match: A0A068VGL1_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00005204001 PE=3 SV=1) HSP 1 Score: 162.9 bits (411), Expect = 2.2e-37 Identity = 86/114 (75.44%), Postives = 94/114 (82.46%), Query Frame = 1
BLAST of Cucsa.156840 vs. TrEMBL
Match: A0A059C2A0_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E00482 PE=3 SV=1) HSP 1 Score: 162.5 bits (410), Expect = 2.8e-37 Identity = 85/111 (76.58%), Postives = 92/111 (82.88%), Query Frame = 1
BLAST of Cucsa.156840 vs. TAIR10
Match: AT5G47700.1 (AT5G47700.1 60S acidic ribosomal protein family) HSP 1 Score: 141.7 bits (356), Expect = 2.6e-34 Identity = 74/113 (65.49%), Postives = 89/113 (78.76%), Query Frame = 1
BLAST of Cucsa.156840 vs. TAIR10
Match: AT1G01100.1 (AT1G01100.1 60S acidic ribosomal protein family) HSP 1 Score: 141.7 bits (356), Expect = 2.6e-34 Identity = 74/112 (66.07%), Postives = 88/112 (78.57%), Query Frame = 1
BLAST of Cucsa.156840 vs. TAIR10
Match: AT4G00810.1 (AT4G00810.1 60S acidic ribosomal protein family) HSP 1 Score: 137.5 bits (345), Expect = 4.9e-33 Identity = 72/113 (63.72%), Postives = 89/113 (78.76%), Query Frame = 1
BLAST of Cucsa.156840 vs. TAIR10
Match: AT5G24510.1 (AT5G24510.1 60S acidic ribosomal protein family) HSP 1 Score: 127.5 bits (319), Expect = 5.1e-30 Identity = 70/111 (63.06%), Postives = 80/111 (72.07%), Query Frame = 1
BLAST of Cucsa.156840 vs. TAIR10
Match: AT3G44590.2 (AT3G44590.2 60S acidic ribosomal protein family) HSP 1 Score: 56.6 bits (135), Expect = 1.1e-08 Identity = 35/93 (37.63%), Postives = 50/93 (53.76%), Query Frame = 1
BLAST of Cucsa.156840 vs. NCBI nr
Match: gi|778655173|ref|XP_004138012.2| (PREDICTED: 60S acidic ribosomal protein P1 [Cucumis sativus]) HSP 1 Score: 211.8 bits (538), Expect = 5.8e-52 Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 1
BLAST of Cucsa.156840 vs. NCBI nr
Match: gi|659111169|ref|XP_008455614.1| (PREDICTED: 60S acidic ribosomal protein P1-like [Cucumis melo]) HSP 1 Score: 205.7 bits (522), Expect = 4.2e-50 Identity = 105/108 (97.22%), Postives = 106/108 (98.15%), Query Frame = 1
BLAST of Cucsa.156840 vs. NCBI nr
Match: gi|702242623|ref|XP_010048528.1| (PREDICTED: 60S acidic ribosomal protein P1-like [Eucalyptus grandis]) HSP 1 Score: 163.7 bits (413), Expect = 1.8e-37 Identity = 85/112 (75.89%), Postives = 93/112 (83.04%), Query Frame = 1
BLAST of Cucsa.156840 vs. NCBI nr
Match: gi|694381011|ref|XP_009366604.1| (PREDICTED: 60S acidic ribosomal protein P1-like [Pyrus x bretschneideri]) HSP 1 Score: 163.7 bits (413), Expect = 1.8e-37 Identity = 87/112 (77.68%), Postives = 92/112 (82.14%), Query Frame = 1
BLAST of Cucsa.156840 vs. NCBI nr
Match: gi|470141804|ref|XP_004306618.1| (PREDICTED: 60S acidic ribosomal protein P1-like [Fragaria vesca subsp. vesca]) HSP 1 Score: 162.9 bits (411), Expect = 3.1e-37 Identity = 86/112 (76.79%), Postives = 93/112 (83.04%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: None |