CsaV3_1G000010 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_1G000010
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	60S acidic ribosomal protein P1-like
Location	chr1 : 22415 .. 23923 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCATGTTTTTGGTAGTGGCATGAAAAACCCTAAATCCTAATCCCTCTTCTCTCAGTATATAATCAGATAGAGTAGTGGCGATCGACGGACGCGAATTTTGCCTCCCAATTGTCTCCTTTCAGCTCTGAGGTCATTATTGATTGGTTAATTCGCATTTAGCCATGTCTACCAGTGAACTCGCGTGCGCGTACGCCGCCCTGGCTCTTCACGATGATGGAATCGCAATCACTGTACGAACCATTATCTTTCTTTGTTTTTATCTTTTTTTTTTTCATTCTTTGGATTATTTGATGCCTGATTAATTTGCATATTGTGTATAGGCGGAAAAGATTGCAGCCGTTGTAGCAGCTGCGGGGCTCTGTGTGGAATCTTACTGGCCTAGCTTGTTTGCTAAATTGGCCGAGAAGAGGAACATTGGGGACCTTCTTCTTAATGTTGGCTGTGGAGGTGGCGCTGCGGCTTCTGTGGCTGTAGCTGCTCCTACCGCCAGTGCTGCTGCCGCTCCTGCCATCGAGGAAAAGAGGGTATGCGGATGAATCTTTAACCGTTCTTCATTTTGAAAGTCTCCTTTACTTCTCTGTCTGCTAGCTCTAACTTTCCATTTACGCATGATTTTGAACAAGGGTCTTTTTCGTATATATATACTCACATAACACACATCCTAATACTAGCTAGTTACTGCCAAATCAGTTGACTACGAAAAATTGAACTGTTTAACTGTTGCAAATATAGGTTTTTTTTTTTCTTGCAACCAACCGTTAGGTAGTTCATAATATTCCTTTGAACTTTGGAAGTTAAGGATTTCATGTATCCAAGAGATTCAATAAAAAACTGAAAATTGATGAGGGTAATTTGTACTTTTGGAAATTTTAAGTTATTTTCGTTGATTGAGATATTAGTGACTTAGATCTTTATCGTTGCTTTAGTTTCATTCGCCTCGTTGTTCCTTTTTTGTCAATTGTTCATTTAAGCCAATTGTGCAGGAGGAGCCAAAGGAGGAGAGCGATGATGACATGGGATTCAGCTTATTCGATTAAGAGGCTTTCTTTATTTTGTAGGATTTTAACAGGAAACTATTTGGGTGGCTAGCTTAATTTTGATTTTTCGCTACTAATTTATCTCAAGATTTGTCTCTTTAATTGGGAGTTTTGAGTTTTGATTTGCCTTCAATGTACCGGTAACTGCATATTTTCATTCTTTTTTCTTAATTACTCCACATTGCAATGAGATCAAAATTTATGAGAGGAGTTATTTGGTTAAACCCGGGAACCACGTTTCTCGGTTGCAATGAGATCAAAATTTATGAGAGGAGTTATTTGGTTAAACCCGGGAACCACGTTTCTTGGTTTTTGTTTTCTAGGTTTAGTTGATAATCACTCTCTGAAATTACTTATTTTTCATTTTGAATTCTCCTCCTCGGTGTAAATTCTTATTGAAAATGATATTGATGAAAACTCATTGATATCAATAGTATTTTTGATATCTTTTGAAATAGTTCTAGGGTTTAG

mRNA sequence

ATGTCTACCAGTGAACTCGCGTGCGCGTACGCCGCCCTGGCTCTTCACGATGATGGAATCGCAATCACTGCGGAAAAGATTGCAGCCGTTGTAGCAGCTGCGGGGCTCTGTGTGGAATCTTACTGGCCTAGCTTGTTTGCTAAATTGGCCGAGAAGAGGAACATTGGGGACCTTCTTCTTAATGTTGGCTGTGGAGGTGGCGCTGCGGCTTCTGTGGCTGTAGCTGCTCCTACCGCCAGTGCTGCTGCCGCTCCTGCCATCGAGGAAAAGAGGGAGGAGCCAAAGGAGGAGAGCGATGATGACATGGGATTCAGCTTATTCGATTAA

Coding sequence (CDS)

ATGTCTACCAGTGAACTCGCGTGCGCGTACGCCGCCCTGGCTCTTCACGATGATGGAATCGCAATCACTGCGGAAAAGATTGCAGCCGTTGTAGCAGCTGCGGGGCTCTGTGTGGAATCTTACTGGCCTAGCTTGTTTGCTAAATTGGCCGAGAAGAGGAACATTGGGGACCTTCTTCTTAATGTTGGCTGTGGAGGTGGCGCTGCGGCTTCTGTGGCTGTAGCTGCTCCTACCGCCAGTGCTGCTGCCGCTCCTGCCATCGAGGAAAAGAGGGAGGAGCCAAAGGAGGAGAGCGATGATGACATGGGATTCAGCTTATTCGATTAA

Protein sequence

MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLLNVGCGGGAAASVAVAAPTASAAAAPAIEEKREEPKEESDDDMGFSLFD

Homology

[Close]

BLAST of CsaV3_1G000010 vs. NCBI nr
Match: XP_004138012.2 (PREDICTED: 60S acidic ribosomal protein P1 [Cucumis sativus] >KGN63426.1 hypothetical protein Csa_1G000010 [Cucumis sativus])

HSP 1 Score: 129.0 bits (323), Expect = 9.6e-27
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60
           MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL
Sbjct: 1   MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60

Query: 61  NVGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMGFSLFD 109
           NVGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMGFSLFD
Sbjct: 61  NVGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMGFSLFD 108

[Close]

BLAST of CsaV3_1G000010 vs. NCBI nr
Match: XP_008455614.1 (PREDICTED: 60S acidic ribosomal protein P1-like isoform X1 [Cucumis melo])

HSP 1 Score: 129.0 bits (323), Expect = 9.6e-27
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60
           MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL
Sbjct: 1   MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60

Query: 61  NVGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMGFSLFD 109
           NVGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMGFSLFD
Sbjct: 61  NVGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMGFSLFD 108

[Close]

BLAST of CsaV3_1G000010 vs. NCBI nr
Match: XP_016901771.1 (PREDICTED: 60S acidic ribosomal protein P1-like isoform X2 [Cucumis melo])

HSP 1 Score: 128.6 bits (322), Expect = 1.3e-26
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 1  MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60
          MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL
Sbjct: 1  MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60

Query: 61 NVGCG 66
          NVGCG
Sbjct: 61 NVGCG 65

[Close]

BLAST of CsaV3_1G000010 vs. NCBI nr
Match: XP_022140845.1 (60S acidic ribosomal protein P1-like [Momordica charantia])

HSP 1 Score: 125.6 bits (314), Expect = 1.1e-25
Identity = 63/65 (96.92%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 1  MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60
          MSTSELACAYAA+AL+DDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL
Sbjct: 1  MSTSELACAYAAMALYDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60

Query: 61 NVGCG 66
          NVGCG
Sbjct: 61 NVGCG 65

[Close]

BLAST of CsaV3_1G000010 vs. NCBI nr
Match: XP_022945965.1 (60S acidic ribosomal protein P1-like [Cucurbita moschata] >XP_023541270.1 60S acidic ribosomal protein P1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 125.6 bits (314), Expect = 1.1e-25
Identity = 63/65 (96.92%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 1  MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60
          MSTSELACAYAALALHDDGIAITA+KIAAVVAAAGLCVESYWPSLFAKLAEKR+IGDLLL
Sbjct: 1  MSTSELACAYAALALHDDGIAITADKIAAVVAAAGLCVESYWPSLFAKLAEKRDIGDLLL 60

Query: 61 NVGCG 66
          NVGCG
Sbjct: 61 NVGCG 65

[Close]

BLAST of CsaV3_1G000010 vs. TAIR10
Match: AT5G24510.1 (60S acidic ribosomal protein family)

HSP 1 Score: 95.1 bits (235), Expect = 2.8e-20
Identity = 47/65 (72.31%), Postives = 53/65 (81.54%), Query Frame = 0


Query: 1  MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60
          MSTSELAC YAAL LHDDGI ITAE I+ +V  A + VESYWPSLFAKL EK+NI DL++
Sbjct: 1  MSTSELACTYAALILHDDGIEITAENISKLVKTANVNVESYWPSLFAKLCEKKNIDDLIM 60

Query: 61 NVGCG 66
          NVG G
Sbjct: 61 NVGAG 65

[Close]

BLAST of CsaV3_1G000010 vs. TAIR10
Match: AT1G01100.1 (60S acidic ribosomal protein family)

HSP 1 Score: 87.8 bits (216), Expect = 4.5e-18
Identity = 43/64 (67.19%), Postives = 54/64 (84.38%), Query Frame = 0


Query: 1  MST-SELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLL 60
          MST  ELAC+YA + L D+GIAITA+KIA +V AAG+ +ESYWP LFAK+AEKRN+ DL+
Sbjct: 1  MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLI 60

Query: 61 LNVG 64
          +NVG
Sbjct: 61 MNVG 64

[Close]

BLAST of CsaV3_1G000010 vs. TAIR10
Match: AT5G47700.1 (60S acidic ribosomal protein family)

HSP 1 Score: 87.8 bits (216), Expect = 4.5e-18
Identity = 43/64 (67.19%), Postives = 54/64 (84.38%), Query Frame = 0


Query: 1  MST-SELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLL 60
          MST  ELAC+YA + L D+GIAITA+KIA +V AAG+ +ESYWP LFAK+AEKRN+ DL+
Sbjct: 1  MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVTIESYWPMLFAKMAEKRNVTDLI 60

Query: 61 LNVG 64
          +NVG
Sbjct: 61 MNVG 64

[Close]

BLAST of CsaV3_1G000010 vs. TAIR10
Match: AT4G00810.1 (60S acidic ribosomal protein family)

HSP 1 Score: 85.5 bits (210), Expect = 2.2e-17
Identity = 42/64 (65.62%), Postives = 54/64 (84.38%), Query Frame = 0


Query: 1  MST-SELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLL 60
          MST  ELAC+YA + L D+GIAIT++KIA +V AAG+ +ESYWP LFAK+AEKRN+ DL+
Sbjct: 1  MSTVGELACSYAVMILEDEGIAITSDKIATLVKAAGVEIESYWPMLFAKMAEKRNVTDLI 60

Query: 61 LNVG 64
          +NVG
Sbjct: 61 MNVG 64

[Close]

BLAST of CsaV3_1G000010 vs. Swiss-Prot
Match: sp|P52855|RLA1_MAIZE (60S acidic ribosomal protein P1 OS=Zea mays OX=4577 GN=RPP1A PE=1 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.2e-17
Identity = 45/63 (71.43%), Postives = 53/63 (84.13%), Query Frame = 0


Query: 1  MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60
          M++ ELAC YAAL L DDGIAITAEKIA +V AA + VESYWP+LFAKL EKRN+ DL+L
Sbjct: 1  MASGELACRYAALILSDDGIAITAEKIATIVKAANIKVESYWPALFAKLLEKRNVEDLIL 60

Query: 61 NVG 64
          +VG
Sbjct: 61 SVG 63

[Close]

BLAST of CsaV3_1G000010 vs. Swiss-Prot
Match: sp|Q8LCW9|RLA11_ARATH (60S acidic ribosomal protein P1-1 OS=Arabidopsis thaliana OX=3702 GN=RPP1A PE=3 SV=2)

HSP 1 Score: 87.8 bits (216), Expect = 8.0e-17
Identity = 43/64 (67.19%), Postives = 54/64 (84.38%), Query Frame = 0


Query: 1  MST-SELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLL 60
          MST  ELAC+YA + L D+GIAITA+KIA +V AAG+ +ESYWP LFAK+AEKRN+ DL+
Sbjct: 1  MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLI 60

Query: 61 LNVG 64
          +NVG
Sbjct: 61 MNVG 64

[Close]

BLAST of CsaV3_1G000010 vs. Swiss-Prot
Match: sp|Q8LEQ0|RLA13_ARATH (60S acidic ribosomal protein P1-3 OS=Arabidopsis thaliana OX=3702 GN=RPP1C PE=1 SV=2)

HSP 1 Score: 87.8 bits (216), Expect = 8.0e-17
Identity = 43/64 (67.19%), Postives = 54/64 (84.38%), Query Frame = 0


Query: 1  MST-SELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLL 60
          MST  ELAC+YA + L D+GIAITA+KIA +V AAG+ +ESYWP LFAK+AEKRN+ DL+
Sbjct: 1  MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVTIESYWPMLFAKMAEKRNVTDLI 60

Query: 61 LNVG 64
          +NVG
Sbjct: 61 MNVG 64

[Close]

BLAST of CsaV3_1G000010 vs. Swiss-Prot
Match: sp|O23095|RLA12_ARATH (60S acidic ribosomal protein P1-2 OS=Arabidopsis thaliana OX=3702 GN=RPP1B PE=1 SV=2)

HSP 1 Score: 85.5 bits (210), Expect = 4.0e-16
Identity = 42/64 (65.62%), Postives = 54/64 (84.38%), Query Frame = 0


Query: 1  MST-SELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLL 60
          MST  ELAC+YA + L D+GIAIT++KIA +V AAG+ +ESYWP LFAK+AEKRN+ DL+
Sbjct: 1  MSTVGELACSYAVMILEDEGIAITSDKIATLVKAAGVEIESYWPMLFAKMAEKRNVTDLI 60

Query: 61 LNVG 64
          +NVG
Sbjct: 61 MNVG 64

[Close]

BLAST of CsaV3_1G000010 vs. Swiss-Prot
Match: sp|P29763|RLA1_CHLRE (60S acidic ribosomal protein P1 OS=Chlamydomonas reinhardtii OX=3055 PE=3 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 3.4e-15
Identity = 40/63 (63.49%), Postives = 49/63 (77.78%), Query Frame = 0


Query: 1  MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60
          MSTSELAC YAAL LHDDG+ ITA+ I  +  AAG+ VE YWP+LFAKL  K+++ DL+ 
Sbjct: 1  MSTSELACTYAALILHDDGLEITADNINTICKAAGVEVEGYWPALFAKLFAKKSMDDLIT 60

Query: 61 NVG 64
          NVG
Sbjct: 61 NVG 63

[Close]

BLAST of CsaV3_1G000010 vs. TrEMBL
Match: tr|A0A1S3C0X1|A0A1S3C0X1_CUCME (60S acidic ribosomal protein P1-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103495745 PE=3 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 6.4e-27
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60
           MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL
Sbjct: 1   MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60

Query: 61  NVGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMGFSLFD 109
           NVGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMGFSLFD
Sbjct: 61  NVGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMGFSLFD 108

[Close]

BLAST of CsaV3_1G000010 vs. TrEMBL
Match: tr|A0A0A0LTV1|A0A0A0LTV1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G000010 PE=3 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 6.4e-27
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60
           MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL
Sbjct: 1   MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60

Query: 61  NVGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMGFSLFD 109
           NVGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMGFSLFD
Sbjct: 61  NVGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMGFSLFD 108

[Close]

BLAST of CsaV3_1G000010 vs. TrEMBL
Match: tr|A0A1S4E0L6|A0A1S4E0L6_CUCME (60S acidic ribosomal protein P1-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103495745 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 8.3e-27
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 1  MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60
          MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL
Sbjct: 1  MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60

Query: 61 NVGCG 66
          NVGCG
Sbjct: 61 NVGCG 65

[Close]

BLAST of CsaV3_1G000010 vs. TrEMBL
Match: tr|A0A2N9IW14|A0A2N9IW14_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS56215 PE=3 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 3.7e-19
Identity = 51/63 (80.95%), Postives = 57/63 (90.48%), Query Frame = 0


Query: 1  MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60
          MST ELAC+YAAL LHDDGIAIT+EKIA+VV AAG+ VESYWPSLFAKLAEKRN+ DL+L
Sbjct: 1  MSTGELACSYAALLLHDDGIAITSEKIASVVKAAGVAVESYWPSLFAKLAEKRNLEDLIL 60

Query: 61 NVG 64
          N G
Sbjct: 61 NAG 63

[Close]

BLAST of CsaV3_1G000010 vs. TrEMBL
Match: tr|A0A2P4M418|A0A2P4M418_QUESU (60s acidic ribosomal protein p1-2 OS=Quercus suber OX=58331 GN=CFP56_41587 PE=3 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.9e-18
Identity = 50/65 (76.92%), Postives = 56/65 (86.15%), Query Frame = 0


Query: 1  MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60
          MST ELAC YA+L LHDDGIAIT+EKIA +V AAG+ VESYWPSLFAKLAEKR+I DL+L
Sbjct: 30 MSTGELACTYASLLLHDDGIAITSEKIATLVKAAGVSVESYWPSLFAKLAEKRSIDDLIL 89

Query: 61 NVGCG 66
          N G G
Sbjct: 90 NAGSG 94

The following BLAST results are available for this feature:

BLAST of CsaV3_1G000010 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004138012.2	9.6e-27	100.00	PREDICTED: 60S acidic ribosomal protein P1 [Cucumis sativus] >KGN63426.1 hypothe...	[more]
XP_008455614.1	9.6e-27	100.00	PREDICTED: 60S acidic ribosomal protein P1-like isoform X1 [Cucumis melo]	[more]
XP_016901771.1	1.3e-26	100.00	PREDICTED: 60S acidic ribosomal protein P1-like isoform X2 [Cucumis melo]	[more]
XP_022140845.1	1.1e-25	96.92	60S acidic ribosomal protein P1-like [Momordica charantia]	[more]
XP_022945965.1	1.1e-25	96.92	60S acidic ribosomal protein P1-like [Cucurbita moschata] >XP_023541270.1 60S ac...	[more]

BLAST of CsaV3_1G000010 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G24510.1	2.8e-20	72.31	60S acidic ribosomal protein family	[more]
AT1G01100.1	4.5e-18	67.19	60S acidic ribosomal protein family	[more]
AT5G47700.1	4.5e-18	67.19	60S acidic ribosomal protein family	[more]
AT4G00810.1	2.2e-17	65.63	60S acidic ribosomal protein family	[more]

BLAST of CsaV3_1G000010 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P52855\|RLA1_MAIZE	1.2e-17	71.43	60S acidic ribosomal protein P1 OS=Zea mays OX=4577 GN=RPP1A PE=1 SV=1	[more]
sp\|Q8LCW9\|RLA11_ARATH	8.0e-17	67.19	60S acidic ribosomal protein P1-1 OS=Arabidopsis thaliana OX=3702 GN=RPP1A PE=3 ...	[more]
sp\|Q8LEQ0\|RLA13_ARATH	8.0e-17	67.19	60S acidic ribosomal protein P1-3 OS=Arabidopsis thaliana OX=3702 GN=RPP1C PE=1 ...	[more]
sp\|O23095\|RLA12_ARATH	4.0e-16	65.63	60S acidic ribosomal protein P1-2 OS=Arabidopsis thaliana OX=3702 GN=RPP1B PE=1 ...	[more]
sp\|P29763\|RLA1_CHLRE	3.4e-15	63.49	60S acidic ribosomal protein P1 OS=Chlamydomonas reinhardtii OX=3055 PE=3 SV=1	[more]

BLAST of CsaV3_1G000010 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C0X1\|A0A1S3C0X1_CUCME	6.4e-27	100.00	60S acidic ribosomal protein P1-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A0A0LTV1\|A0A0A0LTV1_CUCSA	6.4e-27	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G000010 PE=3 SV=1	[more]
tr\|A0A1S4E0L6\|A0A1S4E0L6_CUCME	8.3e-27	100.00	60S acidic ribosomal protein P1-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A2N9IW14\|A0A2N9IW14_FAGSY	3.7e-19	80.95	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS56215 PE=3 SV=1	[more]
tr\|A0A2P4M418\|A0A2P4M418_QUESU	1.9e-18	76.92	60s acidic ribosomal protein p1-2 OS=Quercus suber OX=58331 GN=CFP56_41587 PE=3 ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006414	translational elongation

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **INTERPRO**
Term	Definition
IPR027534	Ribosomal_L12
IPR038716	P1/P2_N_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006414	translational elongation
biological_process	GO:0031047	gene silencing by RNA
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0006401	RNA catabolic process
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
cellular_component	GO:0016442	RISC complex
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0004518	nuclease activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G000010.1	CsaV3_1G000010.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF00428	Ribosomal_60s	coord: 22..107 e-value: 4.0E-24 score: 84.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 82..108
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 86..102
None	No IPR available	PANTHER	PTHR21141	60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER	coord: 1..108
None	No IPR available	PANTHER	PTHR21141:SF59	60S ACIDIC RIBOSOMAL PROTEIN P1-1-RELATED	coord: 1..108
None	No IPR available	CDD	cd05831	Ribosomal_P1	coord: 16..107 e-value: 1.04109E-17 score: 71.9691
IPR038716	Ribosomal protein P1/P2, N-terminal domain	GENE3D	G3DSA:1.10.10.1410		coord: 1..63 e-value: 1.3E-27 score: 97.3
IPR027534	Ribosomal protein L12 family	HAMAP	MF_01478	Ribosomal_L12_arch	coord: 6..108 score: 13.875

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_1G000010	CSPI01G00010	Wild cucumber (PI 183967)	cpicucB001
CsaV3_1G000010	Cucsa.156840	Cucumber (Gy14) v1	cgycucB236
CsaV3_1G000010	CsGy1G000010	Cucumber (Gy14) v2	cgybcucB002

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None