CSPI01G00010 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI01G00010
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	60S acidic ribosomal protein P1
Location	Chr1 : 3006 .. 4307 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTTTTGGTAGTGGCATGAAAAACCCTAAATCCTAATCCCTCTTCTCTCAGTATATAATCAGATAGAGTAGTGGCGATCGACGGACGCGAATTTTGCCTCCCAATTGTCTCCTTTCAGCTCTGAGATCATTATTGATTGGTTAATTCGCATTTAGCCATGTCTACCAGTGAACTCGCGTGCGCGTACGCCGCCCTGGCTCTTCACGATGATGGAATCGCAATCACTGTACGAACCATTATCTTTCTTTGTTTTTATCTTTTTTTTTTTCATTCTTTGGATTATTTGATGCCTGATTAATTTGCATATTGTGTATAGGCGGAAAAGATTGCAGCCGTTGTAGCAGCTGCGGGGCTCTGTGTGGAATCTTACTGGCCTAGCTTGTTTGCTAAATTGGCCGAGAAGAGGAACATTGGGGACCTTCTTCTTAATGTTGGCTGTGGAGGTGGCGCTGCGGCTTCTGTGGCTGTAGCTGCTCCTACCGCCAGTGCTGCTGCCGCTCCTGCCATCGAGGAAAAGAGGGTATGCGGATGAATCTTTAACCGTTCTTCATTTTGAAAGTCTCCTTTACTTCTCTGTCTGCTAGCTCTAACTTTCCATTTACGCATGATTTTGAACAAGGGTCTTTTTCGTATATATATACTCACATAACACACATCCTAATACTAGCTAGTTACTGCCAAATTAGTTGACTACGAAAAATTGAACTGTTTAACTGTTGCCAATATAGGTTTTTTTTTTTCTTGCAACCAACCGTTAGGTAGTTCATAATATTCCTTTGAACTTTGGAAGTTAAGGATTTCATGTATCCAAGAGATTCAATAAAAAACTGAAAATTGATGAGGGTAATTTGTACTTTTGGAAATTTTAAGTTATTTTCGTTGATTGAGATATTAGTGACTTAGATCTTTATCGTTGCTTTAGTTTCATTCGCCTCGTTGTTCCTTTTTTGTCATTTGTTCATTTA

mRNA sequence

ATGTCTACCAGTGAACTCGCGTGCGCGTACGCCGCCCTGGCTCTTCACGATGATGGAATCGCAATCACTGCGGAAAAGATTGCAGCCGTTGTAGCAGCTGCGGGGCTCTGTGTGGAATCTTACTGGCCTAGCTTGTTTGCTAAATTGGCCGAGAAGAGGAACATTGGGGACCTTCTTCTTAATGTTGGCTGTGGAGGTGGCGCTGCGGCTTCTGTGGCTGTAGCTGCTCCTACCGCCAGTGCTGCTGCCGCTCCTGCCATCGAGGAAAAGAGGGTATGCGGATGA

Coding sequence (CDS)

ATGTCTACCAGTGAACTCGCGTGCGCGTACGCCGCCCTGGCTCTTCACGATGATGGAATCGCAATCACTGCGGAAAAGATTGCAGCCGTTGTAGCAGCTGCGGGGCTCTGTGTGGAATCTTACTGGCCTAGCTTGTTTGCTAAATTGGCCGAGAAGAGGAACATTGGGGACCTTCTTCTTAATGTTGGCTGTGGAGGTGGCGCTGCGGCTTCTGTGGCTGTAGCTGCTCCTACCGCCAGTGCTGCTGCCGCTCCTGCCATCGAGGAAAAGAGGGTATGCGGATGA

Homology

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BLAST of CSPI01G00010 vs. Swiss-Prot
Match: RLA1_MAIZE (60S acidic ribosomal protein P1 OS=Zea mays GN=RPP1A PE=1 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 2.1e-33
Identity = 81/110 (73.64%), Postives = 92/110 (83.64%), Query Frame = 1


Query: 1   MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60
           M++ ELAC YAAL L DDGIAITAEKIA +V AA + VESYWP+LFAKL EKRN+ DL+L
Sbjct: 1   MASGELACRYAALILSDDGIAITAEKIATIVKAANIKVESYWPALFAKLLEKRNVEDLIL 60

Query: 61  NVGCGGGAAASVAVAAPT--ASAAAAPAIEEKREEPKEESDDDMGFSLFD 109
           +VG GGG AA VA AAP   A+AAAAPA+EEK+EE KEESDDDMGFSLFD
Sbjct: 61  SVGSGGG-AAPVAAAAPAGGAAAAAAPAVEEKKEEAKEESDDDMGFSLFD 109

[Close]

BLAST of CSPI01G00010 vs. Swiss-Prot
Match: RLA13_ARATH (60S acidic ribosomal protein P1-3 OS=Arabidopsis thaliana GN=RPP1C PE=1 SV=2)

HSP 1 Score: 130.6 bits (327), Expect = 1.1e-29
Identity = 74/113 (65.49%), Postives = 89/113 (78.76%), Query Frame = 1


Query: 1   MST-SELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLL 60
           MST  ELAC+YA + L D+GIAITA+KIA +V AAG+ +ESYWP LFAK+AEKRN+ DL+
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVTIESYWPMLFAKMAEKRNVTDLI 60

Query: 61  LNVGCGGGAAASVAVAAPTA---SAAAAPAIEE-KREEPKEESDDDMGFSLFD 109
           +NVG GGG  A VA AAP A   +AAAAPA EE K++EP EESD D+GF LFD
Sbjct: 61  MNVGAGGGGGAPVAAAAPAAGGGAAAAAPAAEEKKKDEPAEESDGDLGFGLFD 113

[Close]

BLAST of CSPI01G00010 vs. Swiss-Prot
Match: RLA11_ARATH (60S acidic ribosomal protein P1-1 OS=Arabidopsis thaliana GN=RPP1A PE=2 SV=2)

HSP 1 Score: 130.6 bits (327), Expect = 1.1e-29
Identity = 74/112 (66.07%), Postives = 88/112 (78.57%), Query Frame = 1


Query: 1   MST-SELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLL 60
           MST  ELAC+YA + L D+GIAITA+KIA +V AAG+ +ESYWP LFAK+AEKRN+ DL+
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLI 60

Query: 61  LNVGCGGGAAASVAVAAPTA--SAAAAPAIEE-KREEPKEESDDDMGFSLFD 109
           +NVG GGG  A VA AAP A   AAAAPA EE K++EP EESD D+GF LFD
Sbjct: 61  MNVGAGGGGGAPVAAAAPAAGGGAAAAPAAEEKKKDEPAEESDGDLGFGLFD 112

[Close]

BLAST of CSPI01G00010 vs. Swiss-Prot
Match: RLA12_ARATH (60S acidic ribosomal protein P1-2 OS=Arabidopsis thaliana GN=RPP1B PE=1 SV=2)

HSP 1 Score: 126.3 bits (316), Expect = 2.0e-28
Identity = 72/113 (63.72%), Postives = 89/113 (78.76%), Query Frame = 1


Query: 1   MST-SELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLL 60
           MST  ELAC+YA + L D+GIAIT++KIA +V AAG+ +ESYWP LFAK+AEKRN+ DL+
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITSDKIATLVKAAGVEIESYWPMLFAKMAEKRNVTDLI 60

Query: 61  LNVGC-GGGAAASVAVAAPTA---SAAAAPAIEEKREEPKEESDDDMGFSLFD 109
           +NVG  GGG  A V+ AAP A   +AAAAPA EEK++EP EESD D+GF LFD
Sbjct: 61  MNVGAGGGGGGAPVSAAAPAAAGGAAAAAPAKEEKKDEPAEESDGDLGFGLFD 113

[Close]

BLAST of CSPI01G00010 vs. Swiss-Prot
Match: RLA1_CHLRE (60S acidic ribosomal protein P1 OS=Chlamydomonas reinhardtii PE=3 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 1.8e-24
Identity = 66/109 (60.55%), Postives = 78/109 (71.56%), Query Frame = 1


Query: 1   MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60
           MSTSELAC YAAL LHDDG+ ITA+ I  +  AAG+ VE YWP+LFAKL  K+++ DL+ 
Sbjct: 1   MSTSELACTYAALILHDDGLEITADNINTICKAAGVEVEGYWPALFAKLFAKKSMDDLIT 60

Query: 61  NVGCGGGAAASVAVAAPTASAAAAPAIEEKREEPKEES-DDDMGFSLFD 109
           NVG GGGAA   A AAP A  A A     K+EE KE S ++DMGFSLFD
Sbjct: 61  NVGAGGGAAP--AAAAPAAGGAPAAGAAPKKEEKKEPSEEEDMGFSLFD 107

[Close]

BLAST of CSPI01G00010 vs. TrEMBL
Match: A0A0A0LTV1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G000010 PE=3 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 9.3e-49
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 1


Query: 1   MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60
           MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL
Sbjct: 1   MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60

Query: 61  NVGCGGGAAASVAVAAPTASAAAAPAIEEKREEPKEESDDDMGFSLFD 109
           NVGCGGGAAASVAVAAPTASAAAAPAIEEKREEPKEESDDDMGFSLFD
Sbjct: 61  NVGCGGGAAASVAVAAPTASAAAAPAIEEKREEPKEESDDDMGFSLFD 108

[Close]

BLAST of CSPI01G00010 vs. TrEMBL
Match: A0A059DF41_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A01408 PE=3 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 1.7e-34
Identity = 85/112 (75.89%), Postives = 93/112 (83.04%), Query Frame = 1


Query: 1   MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60
           MS  ELAC YA L LHDDGI IT EKIA++V AA + VESYWPSLFAKLAEKRN+GDL++
Sbjct: 1   MSAGELACTYATLILHDDGIPITGEKIASLVKAANVSVESYWPSLFAKLAEKRNVGDLIM 60

Query: 61  NVGCGGGAAASVAVAAP----TASAAAAPAIEEKREEPKEESDDDMGFSLFD 109
           NVG GGG AA VAVAAP      SAAAAPA+EEK+EEPKEESDDDMGFSLFD
Sbjct: 61  NVGSGGG-AAPVAVAAPAGGAAGSAAAAPAVEEKKEEPKEESDDDMGFSLFD 111

[Close]

BLAST of CSPI01G00010 vs. TrEMBL
Match: A0A068VGL1_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00005204001 PE=3 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 2.9e-34
Identity = 86/114 (75.44%), Postives = 94/114 (82.46%), Query Frame = 1


Query: 1   MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60
           MS SELAC YA LALHDDGI +TAEKIA +V AA + VESYWPSLFAKL EKRNI DL++
Sbjct: 1   MSVSELACTYACLALHDDGIPVTAEKIATLVKAANVTVESYWPSLFAKLCEKRNIEDLIV 60

Query: 61  NVGCGGGAAASVAVAAPTA------SAAAAPAIEEKREEPKEESDDDMGFSLFD 109
           NVGCGGGAA  VAVAAP A      +AAAAPA EEK+EEPKEESD+DMGFSLFD
Sbjct: 61  NVGCGGGAA--VAVAAPGAGAGSAPAAAAAPATEEKKEEPKEESDEDMGFSLFD 112

[Close]

BLAST of CSPI01G00010 vs. TrEMBL
Match: A0A068U5S5_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00041412001 PE=3 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 2.9e-34
Identity = 86/114 (75.44%), Postives = 94/114 (82.46%), Query Frame = 1


Query: 1   MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60
           MS SELAC YA LALHDDGI +TAEKIA +V AA + VESYWPSLFAKL EKRNI DL++
Sbjct: 1   MSVSELACTYACLALHDDGIPVTAEKIATLVKAANVTVESYWPSLFAKLCEKRNIEDLIV 60

Query: 61  NVGCGGGAAASVAVAAPTA------SAAAAPAIEEKREEPKEESDDDMGFSLFD 109
           NVGCGGGAA  VAVAAP A      +AAAAPA EEK+EEPKEESD+DMGFSLFD
Sbjct: 61  NVGCGGGAA--VAVAAPGAGAGSAPAAAAAPAAEEKKEEPKEESDEDMGFSLFD 112

[Close]

BLAST of CSPI01G00010 vs. TrEMBL
Match: A0A059C2A0_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E00482 PE=3 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 5.0e-34
Identity = 85/111 (76.58%), Postives = 92/111 (82.88%), Query Frame = 1


Query: 1   MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60
           MS  ELAC YA L LHDDGI +TAEKIAA+V +A + VESYWP LFAKLAEKRN+GDL+ 
Sbjct: 76  MSAGELACTYAVLILHDDGIPVTAEKIAALVKSANVSVESYWPGLFAKLAEKRNVGDLIT 135

Query: 61  NVGCGGGAAASVAVAAP---TASAAAAPAIEEKREEPKEESDDDMGFSLFD 109
           NVG GGGAAA VAVAAP    A AAAAPA EEK+EEPKEESDDDMGFSLFD
Sbjct: 136 NVGSGGGAAA-VAVAAPAGGAAPAAAAPAAEEKKEEPKEESDDDMGFSLFD 185

[Close]

BLAST of CSPI01G00010 vs. TAIR10
Match: AT5G47700.1 (AT5G47700.1 60S acidic ribosomal protein family)

HSP 1 Score: 130.6 bits (327), Expect = 6.0e-31
Identity = 74/113 (65.49%), Postives = 89/113 (78.76%), Query Frame = 1


Query: 1   MST-SELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLL 60
           MST  ELAC+YA + L D+GIAITA+KIA +V AAG+ +ESYWP LFAK+AEKRN+ DL+
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVTIESYWPMLFAKMAEKRNVTDLI 60

Query: 61  LNVGCGGGAAASVAVAAPTA---SAAAAPAIEE-KREEPKEESDDDMGFSLFD 109
           +NVG GGG  A VA AAP A   +AAAAPA EE K++EP EESD D+GF LFD
Sbjct: 61  MNVGAGGGGGAPVAAAAPAAGGGAAAAAPAAEEKKKDEPAEESDGDLGFGLFD 113

[Close]

BLAST of CSPI01G00010 vs. TAIR10
Match: AT1G01100.1 (AT1G01100.1 60S acidic ribosomal protein family)

HSP 1 Score: 130.6 bits (327), Expect = 6.0e-31
Identity = 74/112 (66.07%), Postives = 88/112 (78.57%), Query Frame = 1


Query: 1   MST-SELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLL 60
           MST  ELAC+YA + L D+GIAITA+KIA +V AAG+ +ESYWP LFAK+AEKRN+ DL+
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLI 60

Query: 61  LNVGCGGGAAASVAVAAPTA--SAAAAPAIEE-KREEPKEESDDDMGFSLFD 109
           +NVG GGG  A VA AAP A   AAAAPA EE K++EP EESD D+GF LFD
Sbjct: 61  MNVGAGGGGGAPVAAAAPAAGGGAAAAPAAEEKKKDEPAEESDGDLGFGLFD 112

[Close]

BLAST of CSPI01G00010 vs. TAIR10
Match: AT4G00810.1 (AT4G00810.1 60S acidic ribosomal protein family)

HSP 1 Score: 126.3 bits (316), Expect = 1.1e-29
Identity = 72/113 (63.72%), Postives = 89/113 (78.76%), Query Frame = 1


Query: 1   MST-SELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLL 60
           MST  ELAC+YA + L D+GIAIT++KIA +V AAG+ +ESYWP LFAK+AEKRN+ DL+
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITSDKIATLVKAAGVEIESYWPMLFAKMAEKRNVTDLI 60

Query: 61  LNVGC-GGGAAASVAVAAPTA---SAAAAPAIEEKREEPKEESDDDMGFSLFD 109
           +NVG  GGG  A V+ AAP A   +AAAAPA EEK++EP EESD D+GF LFD
Sbjct: 61  MNVGAGGGGGGAPVSAAAPAAAGGAAAAAPAKEEKKDEPAEESDGDLGFGLFD 113

[Close]

BLAST of CSPI01G00010 vs. TAIR10
Match: AT5G24510.1 (AT5G24510.1 60S acidic ribosomal protein family)

HSP 1 Score: 116.3 bits (290), Expect = 1.2e-26
Identity = 70/111 (63.06%), Postives = 80/111 (72.07%), Query Frame = 1


Query: 1   MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60
           MSTSELAC YAAL LHDDGI ITAE I+ +V  A + VESYWPSLFAKL EK+NI DL++
Sbjct: 1   MSTSELACTYAALILHDDGIEITAENISKLVKTANVNVESYWPSLFAKLCEKKNIDDLIM 60

Query: 61  NVGCGG-GAAASVAVAAPTASAAAAPAIEEKREEP--KEESDDDMGFSLFD 109
           NVG GG G A  V  AAPTAS + +   E+K E    KEES+DDM   LFD
Sbjct: 61  NVGAGGCGVARPVTTAAPTASQSVSIPEEKKNEMEVIKEESEDDMIIGLFD 111

[Close]

BLAST of CSPI01G00010 vs. TAIR10
Match: AT3G44590.2 (AT3G44590.2 60S acidic ribosomal protein family)

HSP 1 Score: 47.8 bits (112), Expect = 5.1e-06
Identity = 35/93 (37.63%), Postives = 50/93 (53.76%), Query Frame = 1


Query: 23  TAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDL-------LLNVGCGGGAAASVAVA 82
           +A+ I  ++ A G  V+     L  K    ++I +L       L +V  GGG A S A +
Sbjct: 19  SADNIKDIIGAVGADVDGESIELLLKEVSGKDIAELIASGREKLASVPSGGGVAVSAAPS 78

Query: 83  APTASAAAAPAIEEKREEPKEESDDDMGFSLFD 109
           +    AAA    +E ++E KEESDDDMGFSLF+
Sbjct: 79  SGGGGAAAPAEKKEAKKEEKEESDDDMGFSLFE 111

[Close]

BLAST of CSPI01G00010 vs. NCBI nr
Match: gi|778655173|ref|XP_004138012.2| (PREDICTED: 60S acidic ribosomal protein P1 [Cucumis sativus])

HSP 1 Score: 200.7 bits (509), Expect = 1.3e-48
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 1


Query: 1   MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60
           MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL
Sbjct: 1   MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60

Query: 61  NVGCGGGAAASVAVAAPTASAAAAPAIEEKREEPKEESDDDMGFSLFD 109
           NVGCGGGAAASVAVAAPTASAAAAPAIEEKREEPKEESDDDMGFSLFD
Sbjct: 61  NVGCGGGAAASVAVAAPTASAAAAPAIEEKREEPKEESDDDMGFSLFD 108

[Close]

BLAST of CSPI01G00010 vs. NCBI nr
Match: gi|659111169|ref|XP_008455614.1| (PREDICTED: 60S acidic ribosomal protein P1-like [Cucumis melo])

HSP 1 Score: 194.5 bits (493), Expect = 9.6e-47
Identity = 105/108 (97.22%), Postives = 106/108 (98.15%), Query Frame = 1


Query: 1   MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60
           MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL
Sbjct: 1   MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60

Query: 61  NVGCGGGAAASVAVAAPTASAAAAPAIEEKREEPKEESDDDMGFSLFD 109
           NVGCGGGAAA VAVAAPTASAAAA AIEEK+EEPKEESDDDMGFSLFD
Sbjct: 61  NVGCGGGAAAPVAVAAPTASAAAASAIEEKKEEPKEESDDDMGFSLFD 108

[Close]

BLAST of CSPI01G00010 vs. NCBI nr
Match: gi|702242623|ref|XP_010048528.1| (PREDICTED: 60S acidic ribosomal protein P1-like [Eucalyptus grandis])

HSP 1 Score: 153.3 bits (386), Expect = 2.4e-34
Identity = 85/112 (75.89%), Postives = 93/112 (83.04%), Query Frame = 1


Query: 1   MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60
           MS  ELAC YA L LHDDGI IT EKIA++V AA + VESYWPSLFAKLAEKRN+GDL++
Sbjct: 1   MSAGELACTYATLILHDDGIPITGEKIASLVKAANVSVESYWPSLFAKLAEKRNVGDLIM 60

Query: 61  NVGCGGGAAASVAVAAP----TASAAAAPAIEEKREEPKEESDDDMGFSLFD 109
           NVG GGG AA VAVAAP      SAAAAPA+EEK+EEPKEESDDDMGFSLFD
Sbjct: 61  NVGSGGG-AAPVAVAAPAGGAAGSAAAAPAVEEKKEEPKEESDDDMGFSLFD 111

[Close]

BLAST of CSPI01G00010 vs. NCBI nr
Match: gi|694381011|ref|XP_009366604.1| (PREDICTED: 60S acidic ribosomal protein P1-like [Pyrus x bretschneideri])

HSP 1 Score: 152.9 bits (385), Expect = 3.2e-34
Identity = 87/112 (77.68%), Postives = 92/112 (82.14%), Query Frame = 1


Query: 1   MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60
           MS SE+AC YAAL LHDDGI ITAEKIA VV AA + VESYWP LFAKLAEKRNI DL+L
Sbjct: 1   MSISEIACTYAALILHDDGIPITAEKIATVVKAANITVESYWPGLFAKLAEKRNIEDLIL 60

Query: 61  NVGCGGGAAASVAVAAP----TASAAAAPAIEEKREEPKEESDDDMGFSLFD 109
           NVG GGG  A VAVAAP     A AAAAPA+EEK+EEPKEESDDDMGFSLFD
Sbjct: 61  NVGAGGGGGA-VAVAAPGAGGAAPAAAAPAVEEKKEEPKEESDDDMGFSLFD 111

[Close]

BLAST of CSPI01G00010 vs. NCBI nr
Match: gi|661893159|emb|CDP02968.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 152.5 bits (384), Expect = 4.2e-34
Identity = 86/114 (75.44%), Postives = 94/114 (82.46%), Query Frame = 1


Query: 1   MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60
           MS SELAC YA LALHDDGI +TAEKIA +V AA + VESYWPSLFAKL EKRNI DL++
Sbjct: 1   MSVSELACTYACLALHDDGIPVTAEKIATLVKAANVTVESYWPSLFAKLCEKRNIEDLIV 60

Query: 61  NVGCGGGAAASVAVAAPTA------SAAAAPAIEEKREEPKEESDDDMGFSLFD 109
           NVGCGGGAA  VAVAAP A      +AAAAPA EEK+EEPKEESD+DMGFSLFD
Sbjct: 61  NVGCGGGAA--VAVAAPGAGAGSAPAAAAAPAAEEKKEEPKEESDEDMGFSLFD 112

The following BLAST results are available for this feature:

BLAST of CSPI01G00010 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RLA1_MAIZE	2.1e-33	73.64	60S acidic ribosomal protein P1 OS=Zea mays GN=RPP1A PE=1 SV=1	[more]
RLA13_ARATH	1.1e-29	65.49	60S acidic ribosomal protein P1-3 OS=Arabidopsis thaliana GN=RPP1C PE=1 SV=2	[more]
RLA11_ARATH	1.1e-29	66.07	60S acidic ribosomal protein P1-1 OS=Arabidopsis thaliana GN=RPP1A PE=2 SV=2	[more]
RLA12_ARATH	2.0e-28	63.72	60S acidic ribosomal protein P1-2 OS=Arabidopsis thaliana GN=RPP1B PE=1 SV=2	[more]
RLA1_CHLRE	1.8e-24	60.55	60S acidic ribosomal protein P1 OS=Chlamydomonas reinhardtii PE=3 SV=1	[more]

BLAST of CSPI01G00010 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LTV1_CUCSA	9.3e-49	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G000010 PE=3 SV=1	[more]
A0A059DF41_EUCGR	1.7e-34	75.89	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A01408 PE=3 SV=1	[more]
A0A068VGL1_COFCA	2.9e-34	75.44	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00005204001 PE=3 SV=1	[more]
A0A068U5S5_COFCA	2.9e-34	75.44	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00041412001 PE=3 SV=1	[more]
A0A059C2A0_EUCGR	5.0e-34	76.58	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E00482 PE=3 SV=1	[more]

BLAST of CSPI01G00010 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G47700.1	6.0e-31	65.49	60S acidic ribosomal protein family	[more]
AT1G01100.1	6.0e-31	66.07	60S acidic ribosomal protein family	[more]
AT4G00810.1	1.1e-29	63.72	60S acidic ribosomal protein family	[more]
AT5G24510.1	1.2e-26	63.06	60S acidic ribosomal protein family	[more]
AT3G44590.2	5.1e-06	37.63	60S acidic ribosomal protein family	[more]

BLAST of CSPI01G00010 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778655173\|ref\|XP_004138012.2\|	1.3e-48	100.00	PREDICTED: 60S acidic ribosomal protein P1 [Cucumis sativus]	[more]
gi\|659111169\|ref\|XP_008455614.1\|	9.6e-47	97.22	PREDICTED: 60S acidic ribosomal protein P1-like [Cucumis melo]	[more]
gi\|702242623\|ref\|XP_010048528.1\|	2.4e-34	75.89	PREDICTED: 60S acidic ribosomal protein P1-like [Eucalyptus grandis]	[more]
gi\|694381011\|ref\|XP_009366604.1\|	3.2e-34	77.68	PREDICTED: 60S acidic ribosomal protein P1-like [Pyrus x bretschneideri]	[more]
gi\|661893159\|emb\|CDP02968.1\|	4.2e-34	75.44	unnamed protein product [Coffea canephora]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR027534	Ribosomal_L12

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006414	translational elongation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006414	translational elongation
biological_process	GO:0031047	gene silencing by RNA
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0006401	RNA catabolic process
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
cellular_component	GO:0016442	RISC complex
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0004518	nuclease activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G00010.2	CSPI01G00010.2	mRNA
CSPI01G00010.1	CSPI01G00010.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR21141	60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER	coord: 1..90 score: 4.4
None	No IPR available	PFAM	PF00428	Ribosomal_60s	coord: 22..90 score: 4.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI01G00010	Csa1G000010	Cucumber (Chinese Long) v2	cpicuB000
CSPI01G00010	CsaV3_1G000010	Cucumber (Chinese Long) v3	cpicucB001
CSPI01G00010	Cucsa.156840	Cucumber (Gy14) v1	cgycpiB229
CSPI01G00010	CsGy1G000010	Cucumber (Gy14) v2	cgybcpiB001

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None