Cucsa.152790 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.152790
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Alpha/beta hydrolase, putative
Location	scaffold01124 : 139423 .. 139565 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATAAATACTAAAATATTAATTGATTGCCCACTTTTCCTGTCTTGCAGCATTTGGAAGTGGAGGGGTTACTCTATTCGCTACCAATGTTCGGGAGACGATGGCCCTGCATTGATACTCATTCATGGTTTTGGAGCAAACAG

mRNA sequence

ATGATAAATACTAAAATATTAATTGATTGCCCACTTTTCCTGTCTTGCAGCATTTGGAAGTGGAGGGGTTACTCTATTCGCTACCAATGTTCGGGAGACGATGGCCCTGCATTGATACTCATTCATGGTTTTGGAGCAAACAG

Coding sequence (CDS)

ATGATAAATACTAAAATATTAATTGATTGCCCACTTTTCCTGTCTTGCAGCATTTGGAAGTGGAGGGGTTACTCTATTCGCTACCAATGTTCGGGAGACGATGGCCCTGCATTGATACTCATTCATGGTTTTGGAGCAAACAG

Protein sequence

MINTKILIDCPLFLSCSIWKWRGYSIRYQCSGDDGPALILIHGFGANX

Homology

[Close]

BLAST of Cucsa.152790 vs. TrEMBL
Match: A0A0A0KX02_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G269110 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 2.2e-10
Identity = 32/33 (96.97%), Postives = 32/33 (96.97%), Query Frame = 1


Query: 15  SCSIWKWRGYSIRYQCSGDDGPALILIHGFGAN 48
           SC IWKWRGYSIRYQCSGDDGPALILIHGFGAN
Sbjct: 81  SC-IWKWRGYSIRYQCSGDDGPALILIHGFGAN 112

[Close]

BLAST of Cucsa.152790 vs. TrEMBL
Match: A0A059DA34_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B03607 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.6e-08
Identity = 28/40 (70.00%), Postives = 31/40 (77.50%), Query Frame = 1


Query: 10  CP--LFLSCSIWKWRGYSIRYQCSGDDGPALILIHGFGAN 48
           CP  L +   +W WRGYSIRYQC GD GPAL+LIHGFGAN
Sbjct: 84  CPPQLEVQSRVWNWRGYSIRYQCCGDSGPALVLIHGFGAN 123

[Close]

BLAST of Cucsa.152790 vs. TrEMBL
Match: A0A0J8CLE9_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g071060 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 2.7e-08
Identity = 29/37 (78.38%), Postives = 31/37 (83.78%), Query Frame = 1


Query: 11  PLFLSCSIWKWRGYSIRYQCSGDDGPALILIHGFGAN 48
           P   SC IWKWRGYSIRYQC G+ GPAL+LIHGFGAN
Sbjct: 85  PSVHSC-IWKWRGYSIRYQCCGNTGPALLLIHGFGAN 120

[Close]

BLAST of Cucsa.152790 vs. TrEMBL
Match: A0A061GSB2_THECC (Alpha/beta-Hydrolases superfamily protein isoform 2 OS=Theobroma cacao GN=TCM_040028 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.3e-07
Identity = 27/37 (72.97%), Postives = 30/37 (81.08%), Query Frame = 1


Query: 11  PLFLSCSIWKWRGYSIRYQCSGDDGPALILIHGFGAN 48
           P   SC+ W WRGYSIRYQCSG  GPAL+L+HGFGAN
Sbjct: 75  PHVQSCT-WNWRGYSIRYQCSGSCGPALVLVHGFGAN 110

[Close]

BLAST of Cucsa.152790 vs. TrEMBL
Match: A0A061GT11_THECC (Alpha/beta-Hydrolases superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_040028 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.3e-07
Identity = 27/37 (72.97%), Postives = 30/37 (81.08%), Query Frame = 1


Query: 11  PLFLSCSIWKWRGYSIRYQCSGDDGPALILIHGFGAN 48
           P   SC+ W WRGYSIRYQCSG  GPAL+L+HGFGAN
Sbjct: 75  PHVQSCT-WNWRGYSIRYQCSGSCGPALVLVHGFGAN 110

[Close]

BLAST of Cucsa.152790 vs. TAIR10
Match: AT5G19850.1 (AT5G19850.1 alpha/beta-Hydrolases superfamily protein)

HSP 1 Score: 62.0 bits (149), Expect = 1.2e-10
Identity = 23/29 (79.31%), Postives = 27/29 (93.10%), Query Frame = 1


Query: 19  WKWRGYSIRYQCSGDDGPALILIHGFGAN 48
           WKW+GYSIRYQC+G  GPAL+L+HGFGAN
Sbjct: 78  WKWKGYSIRYQCAGTSGPALVLVHGFGAN 106

[Close]

BLAST of Cucsa.152790 vs. TAIR10
Match: AT4G25290.1 (AT4G25290.1 DNA photolyases;DNA photolyases)

HSP 1 Score: 48.9 bits (115), Expect = 1.0e-06
Identity = 17/29 (58.62%), Postives = 25/29 (86.21%), Query Frame = 1


Query: 18  IWKWRGYSIRYQCSGDDGPALILIHGFGA 47
           IW+W+GY I+Y   G++GPA++L+HGFGA
Sbjct: 399 IWRWKGYLIQYTVVGNEGPAVLLVHGFGA 427

[Close]

BLAST of Cucsa.152790 vs. NCBI nr
Match: gi|778692786|ref|XP_011653522.1| (PREDICTED: pheophytinase, chloroplastic isoform X2 [Cucumis sativus])

HSP 1 Score: 73.6 bits (179), Expect = 1.1e-10
Identity = 32/35 (91.43%), Postives = 33/35 (94.29%), Query Frame = 1


Query: 13 FLSCSIWKWRGYSIRYQCSGDDGPALILIHGFGAN 48
          F + SIWKWRGYSIRYQCSGDDGPALILIHGFGAN
Sbjct: 27 FEAGSIWKWRGYSIRYQCSGDDGPALILIHGFGAN 61

[Close]

BLAST of Cucsa.152790 vs. NCBI nr
Match: gi|659097917|ref|XP_008449880.1| (PREDICTED: pheophytinase, chloroplastic isoform X2 [Cucumis melo])

HSP 1 Score: 73.2 bits (178), Expect = 1.4e-10
Identity = 31/31 (100.00%), Postives = 31/31 (100.00%), Query Frame = 1


Query: 17 SIWKWRGYSIRYQCSGDDGPALILIHGFGAN 48
          SIWKWRGYSIRYQCSGDDGPALILIHGFGAN
Sbjct: 31 SIWKWRGYSIRYQCSGDDGPALILIHGFGAN 61

[Close]

BLAST of Cucsa.152790 vs. NCBI nr
Match: gi|449463857|ref|XP_004149647.1| (PREDICTED: pheophytinase, chloroplastic isoform X1 [Cucumis sativus])

HSP 1 Score: 72.0 bits (175), Expect = 3.2e-10
Identity = 32/33 (96.97%), Postives = 32/33 (96.97%), Query Frame = 1


Query: 15  SCSIWKWRGYSIRYQCSGDDGPALILIHGFGAN 48
           SC IWKWRGYSIRYQCSGDDGPALILIHGFGAN
Sbjct: 83  SC-IWKWRGYSIRYQCSGDDGPALILIHGFGAN 114

[Close]

BLAST of Cucsa.152790 vs. NCBI nr
Match: gi|700198870|gb|KGN54028.1| (hypothetical protein Csa_4G269110 [Cucumis sativus])

HSP 1 Score: 72.0 bits (175), Expect = 3.2e-10
Identity = 32/33 (96.97%), Postives = 32/33 (96.97%), Query Frame = 1


Query: 15  SCSIWKWRGYSIRYQCSGDDGPALILIHGFGAN 48
           SC IWKWRGYSIRYQCSGDDGPALILIHGFGAN
Sbjct: 81  SC-IWKWRGYSIRYQCSGDDGPALILIHGFGAN 112

[Close]

BLAST of Cucsa.152790 vs. NCBI nr
Match: gi|778692789|ref|XP_011653523.1| (PREDICTED: pheophytinase, chloroplastic isoform X3 [Cucumis sativus])

HSP 1 Score: 72.0 bits (175), Expect = 3.2e-10
Identity = 32/33 (96.97%), Postives = 32/33 (96.97%), Query Frame = 1


Query: 15  SCSIWKWRGYSIRYQCSGDDGPALILIHGFGAN 48
           SC IWKWRGYSIRYQCSGDDGPALILIHGFGAN
Sbjct: 83  SC-IWKWRGYSIRYQCSGDDGPALILIHGFGAN 114

The following BLAST results are available for this feature:

BLAST of Cucsa.152790 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KX02_CUCSA	2.2e-10	96.97	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G269110 PE=4 SV=1	[more]
A0A059DA34_EUCGR	1.6e-08	70.00	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B03607 PE=4 SV=1	[more]
A0A0J8CLE9_BETVU	2.7e-08	78.38	Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g071060 PE=4 S...	[more]
A0A061GSB2_THECC	1.3e-07	72.97	Alpha/beta-Hydrolases superfamily protein isoform 2 OS=Theobroma cacao GN=TCM_04...	[more]
A0A061GT11_THECC	1.3e-07	72.97	Alpha/beta-Hydrolases superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_04...	[more]

BLAST of Cucsa.152790 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G19850.1	1.2e-10	79.31	alpha/beta-Hydrolases superfamily protein	[more]
AT4G25290.1	1.0e-06	58.62	DNA photolyases;DNA photolyases	[more]

BLAST of Cucsa.152790 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778692786\|ref\|XP_011653522.1\|	1.1e-10	91.43	PREDICTED: pheophytinase, chloroplastic isoform X2 [Cucumis sativus]	[more]
gi\|659097917\|ref\|XP_008449880.1\|	1.4e-10	100.00	PREDICTED: pheophytinase, chloroplastic isoform X2 [Cucumis melo]	[more]
gi\|449463857\|ref\|XP_004149647.1\|	3.2e-10	96.97	PREDICTED: pheophytinase, chloroplastic isoform X1 [Cucumis sativus]	[more]
gi\|700198870\|gb\|KGN54028.1\|	3.2e-10	96.97	hypothetical protein Csa_4G269110 [Cucumis sativus]	[more]
gi\|778692789\|ref\|XP_011653523.1\|	3.2e-10	96.97	PREDICTED: pheophytinase, chloroplastic isoform X3 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.152790.1	Cucsa.152790.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR10992	ALPHA/BETA HYDROLASE FOLD-CONTAINING PROTEIN	coord: 17..47 score: 3.9
None	No IPR available	PANTHER	PTHR10992:SF351	HYDROLASE, ALPHA/BETA FOLD FAMILY PROTEIN	coord: 17..47 score: 3.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.152790	CmaCh02G011710	Cucurbita maxima (Rimu)	cgycmaB0424
Cucsa.152790	CmoCh02G012040	Cucurbita moschata (Rifu)	cgycmoB0424
Cucsa.152790	Lsi10G009260	Bottle gourd (USVL1VR-Ls)	cgylsiB245
Cucsa.152790	Cp4.1LG05g05630	Cucurbita pepo (Zucchini)	cgycpeB0410
Cucsa.152790	CsaV3_4G017470	Cucumber (Chinese Long) v3	cgycucB232
Cucsa.152790	Cla97C02G050580	Watermelon (97103) v2	cgywmbB259
Cucsa.152790	Bhi10G000390	Wax gourd	cgywgoB298
Cucsa.152790	Carg13972	Silver-seed gourd	carcgyB0580

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.152790	Cucurbita maxima (Rimu)	cgycmaB0423
Cucsa.152790	Cucurbita moschata (Rifu)	cgycmoB0423
Cucsa.152790	Wild cucumber (PI 183967)	cgycpiB225
Cucsa.152790	Cucumber (Chinese Long) v2	cgycuB220
Cucsa.152790	Melon (DHL92) v3.5.1	cgymeB257
Cucsa.152790	Watermelon (Charleston Gray)	cgywcgB258
Cucsa.152790	Watermelon (97103) v1	cgywmB272
Cucsa.152790	Cucurbita pepo (Zucchini)	cgycpeB0409
Cucsa.152790	Melon (DHL92) v3.6.1	cgymedB255
Cucsa.152790	Silver-seed gourd	carcgyB0603