Carg13972 (gene) Silver-seed gourd
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TATAATCATGGCCGGCGCTCTCTCTTCTTCTCTGCCATTCTCCAAACTTCCTCCATCAATCTCCTCCTCTAAAGTGACCGCCGGCGTCCTGCCATCTTCACTCACTTTCACTCATTCATTTTCTCCACAACTCGGATTGCCCCGCAGAGCCCCTGCATTTTATCCGATTAAGTCTAATGGCTCTCTTTTATCTTCTCAATTTGGCGACCAATTCGATGATCAAGGCCTGCAAATCTCATCGGAAAATACCCGCTCCCAACTCCAAGTCCGAAGCTGGTAGCCGTTTTTGTGTCCTTAATGATGATTGATTCTGTCGTTTCAACGTTTAATTGATCCACTTTTCCTGTCTTGCAGCATTTGGAATTGGAGGGGTTACTCTATTCGCTACCAGTGTGCAGGAGATCATGGCCCTGCATTGATATTGATTCATGGTTTTGGAGCAAACAGGTATTCACCATTCAAAATTTGCTTCTCATACTACTTACTATAGGCATTACCGATGCAAATTGCCGATACTAGAAAATGTCATTAGGTATCTATTCAGTTATTCTTTCATAATTGCGTATTTTATTATTGTCCTGGATGAGGAGCTCAGGCCTTTGCCTCAATTAGGAAGATTATTGGACTGTAGAGAATACTTACACAAGGTTCTTTATGAGTATGGATTCAAATTATTTTGCTGTTACTGATTTTTATTGAGGAACTTCTGACTGGCTCCACGTCCATCTGCAAGACCTTTTTATATAGAAAACTAAAGGAGAATTGAGAATAACAGCTAATTAAGGGGATCATGAGTTTATAAGTAAGGAATACATCTCCATTGATACGAGGCCTTTTGGGGAAATCAAAAGTATAGTCATGAGAGCTTATGTTCAAAGTGTACAATATCATATCATTGTGGAGAGTCGTGGTTCCTAACAAGGTCTTCCACCTTAACCAATAATAGATTTGCCTAAGCACCTAATTGAGCCACTGATTTCCTTTTTGCGATGGTTAGACAGTGTTGACGTTGGGTGAGTTAGGTCGAGCAATTTGCCAGCTAAAAGTCTGCAATTATACTTGCCCCATTGTACTAGAATAAGAACCAAGTCATCGTCCTTGAATCTTGTTCCACATGCGAAGTTCAGTGCTTGATGATTTGTCTTCCTTTTCAGTGACCACTGGAGGAAAAATATACCTGCCCTTGCTGAATCACATAGAGTTTACGCTGTTGATCTTATTGGTTATGGATACTCAGACAAGCCAAACCCAGATCTAGTTGGGGAAAGCTTTTATACATTTGAGACATGGGCTTCCCAGCTGAATGATTTTTGTGTTGACGTGGTTCAGGATGAAGCATTTTTTATTTGTAACTCGATAGGAGGTGACCATCTCATTTTTGAAGTAAATACTTTTTCTTTATTTTTGCCATCCGTATCTTGTTATGGTCCTTAACTTATAGTTGATAAAATCAAGTTTGGACTTGCACATTTTTATCTATTTTGTAATGTATTTTCATTTATTCTAGTTGCTCTTGGACAAATCTGTTCTTATCCGTGCTAGGCTGTTTTAAGTGGATAGACTCTTATGTAATAAAAGTGTTCCCTCTATTTCACGTCTATCCTGTACATGATAAAACCAGCTATAGTCTTTCTATTTCTATTCGATTGTTGTGGTTGTGTGTTTCGAGATTGAATTGCCGTGATTTTGGCTACCTGATTATGTCGGAATCCCTAGTTTTCCTCTTGTGTTCACACAGGAAATCTCATGAAAAAAATAGATCATACGATTGCATAACTAGTATCAAATCTTCGAGTAATAAGTGTGTAGTCTTTTTCTCTTCATCGGTATCCTTCTCTTTTTTACTTAATGGGATATACTCATCTTTGTTATGAAGACAACCTTTCAGTTTTCAGCATATTTCTCAACATTATTGAATGCATATTCTTGTAGGCGTAGTTGGTCTGCAGGCAGCAGTTATGAAACCGCAGATTTGTAAAGGTATTGTTCTTCTAAACATATCTTTACGTATGCTTCATATCAAGAAGCAGCCTTGGTATGGGAAGCCATTGATCAAATCGTTTCAGAGTTTGCTGAGGTAAAAGACATCCCATATATCAATTATTGAATTTAGCCTGAAGTTGTCATCCAAGGTCTCGACTGTTGCAGGAATACTGCTCTAGGAAAATATTTTTTTACAACTGTTGCAACCCCTGAGGCTGTGAAGAATATTCTTTGCCAGGTATCTTTGTTTTTGCTTTGTCATTATTATTATTTTTTATTTATGGGGATGCAATAAGAACCAGAATAAGAACACCAGTAAATAAATTCATTTGAAAATTCAACAAAGTTACTGATTTTCTTGGCCTGTAGATGTAGGGGAATTAAGAAACAAAATCTGTTATGATTCTAAGTTTTTAGATGTTTTGATTATTACTTGATCAATTAATAGGAGTTCTAAGTTTTTTCTCGGTATTCCTTTCTCTATTTATTTAATTTTTCTCTGTATTACTAGCTACCTCGGAAAATTAAAAATAAAAGGATGAAGTGATTATAAGAACAAGGTTCCTAAAGACTCAACATTTCTTTTATGGTGTTGTGATTGCCTTTTACACGTTTCCTGCAGTGTTACCATGACACCTCCCAAGTTACGGATGAACTAGTCCAAATTATCCTCAATCCCGGATTACAGCCGGGTGCCGCCGATGTCTTTCTGGAGTTCATTTGTTACTCAGGCGGGCCCCTTCCTGAAGAACTTTTGCCTAACGTGAAGGTTGCCTTCCTCTAAAGTTGGTACTCTTTGGAACTCCAATTTTCTCCATACCATTGTTGCCTTTTCTCATTTTCTCTTCTTCAGTGTCCTGTATTGATCGGGTGGGGTGACAAAGATCCGTGGGAGCCGATTGAGCTTGGAAGAAATTACGAAAATTTCGAATCTGTGGAAGACTTTGTTGTCATTCCCAATGTTGGACACTGTCCTCAGGTCTCTCTCGCACTCTCTTCATGCCAAGTGTTCTGACTTGTTTGGTTGTGGTTAATTAGTTGTGAGCTTGTGATTGTCTTTTTTACATGGCTAGGCGATTTAGTTTTTGTGCAATTAATTTTTCGAGAAACTTGCTGACTTCAATGTTTGCTTGCATTATTGAAGGACGAGGCACCTCATCTAGTAAATCCGCTCGTCGAGTCGTTTGTGACTCGTCATGCTACAAGATCTGCACGTACATCCTCAGTTGTATAATCCTTCATAACCCGGAGTTCCAATCCTCGGCTTTGGAAGTATGTTCTTTGATCATCTTGAAATTCCTGCTGGACACCTTCTATGATTTACGCCTCCTCACAACTGTAACTTGCCTTGCATAGGAGAGCTGTGTCCTGGATTTTGGCTGTAAAGTTGTCTCTCAATCAATCTGTACACTAGTGCAAGGATACCCTTGCCCCCTCTCCCTTCAGACACACACACACACACACATACTCAAACAACACCATATACCTTATTGTGTATGAC TATAATCATGGCCGGCGCTCTCTCTTCTTCTCTGCCATTCTCCAAACTTCCTCCATCAATCTCCTCCTCTAAAGTGACCGCCGGCGTCCTGCCATCTTCACTCACTTTCACTCATTCATTTTCTCCACAACTCGGATTGCCCCGCAGAGCCCCTGCATTTTATCCGATTAAGTCTAATGGCTCTCTTTTATCTTCTCAATTTGGCGACCAATTCGATGATCAAGGCCTGCAAATCTCATCGGAAAATACCCGCTCCCAACTCCAAGTCCGAAGCTGCATTTGGAATTGGAGGGGTTACTCTATTCGCTACCAGTGTGCAGGAGATCATGGCCCTGCATTGATATTGATTCATGGTTTTGGAGCAAACAGTGACCACTGGAGGAAAAATATACCTGCCCTTGCTGAATCACATAGAGTTTACGCTGTTGATCTTATTGGTTATGGATACTCAGACAAGCCAAACCCAGATCTAGTTGGGGAAAGCTTTTATACATTTGAGACATGGGCTTCCCAGCTGAATGATTTTTGTGTTGACGTGGTTCAGGATGAAGCATTTTTTATTTGTAACTCGATAGGAGGCGTAGTTGGTCTGCAGGCAGCAGTTATGAAACCGCAGATTTGTAAAGGTATTGTTCTTCTAAACATATCTTTACGTATGCTTCATATCAAGAAGCAGCCTTGGTATGGGAAGCCATTGATCAAATCGTTTCAGAGTTTGCTGAGGTAAAAGACATCCCATATATCAATTATTGAATTTAGCCTGAAGTTGTCATCCAAGGTCTCGACTGTTGCAGGAATACTGCTCTAGGAAAATATTTTTTTACAACTGTTGCAACCCCTGAGGCTGTGAAGAATATTCTTTGCCAGTGTTACCATGACACCTCCCAAGTTACGGATGAACTAGTCCAAATTATCCTCAATCCCGGATTACAGCCGGGTGCCGCCGATGTCTTTCTGGAGTTCATTTGTTACTCAGGCGGGCCCCTTCCTGAAGAACTTTTGCCTAACGTGAAGTGTCCTGTATTGATCGGGTGGGGTGACAAAGATCCGTGGGAGCCGATTGAGCTTGGAAGAAATTACGAAAATTTCGAATCTGTGGAAGACTTTGTTGTCATTCCCAATGTTGGACACTGTCCTCAGGACGAGGCACCTCATCTAGTAAATCCGCTCGTCGAGTCGTTTGTGACTCGTCATGCTACAAGATCTGCACGTACATCCTCAGTTGTATAATCCTTCATAACCCGGAGTTCCAATCCTCGGCTTTGGAAGTATGTTCTTTGATCATCTTGAAATTCCTGCTGGACACCTTCTATGATTTACGCCTCCTCACAACTGTAACTTGCCTTGCATAGGAGAGCTGTGTCCTGGATTTTGGCTGTAAAGTTGTCTCTCAATCAATCTGTACACTAGTGCAAGGATACCCTTGCCCCCTCTCCCTTCAGACACACACACACACACACATACTCAAACAACACCATATACCTTATTGTGTATGAC ATGGCCGGCGCTCTCTCTTCTTCTCTGCCATTCTCCAAACTTCCTCCATCAATCTCCTCCTCTAAAGTGACCGCCGGCGTCCTGCCATCTTCACTCACTTTCACTCATTCATTTTCTCCACAACTCGGATTGCCCCGCAGAGCCCCTGCATTTTATCCGATTAAGTCTAATGGCTCTCTTTTATCTTCTCAATTTGGCGACCAATTCGATGATCAAGGCCTGCAAATCTCATCGGAAAATACCCGCTCCCAACTCCAAGTCCGAAGCTGCATTTGGAATTGGAGGGGTTACTCTATTCGCTACCAGTGTGCAGGAGATCATGGCCCTGCATTGATATTGATTCATGGTTTTGGAGCAAACAGTGACCACTGGAGGAAAAATATACCTGCCCTTGCTGAATCACATAGAGTTTACGCTGTTGATCTTATTGGTTATGGATACTCAGACAAGCCAAACCCAGATCTAGTTGGGGAAAGCTTTTATACATTTGAGACATGGGCTTCCCAGCTGAATGATTTTTGTGTTGACGTGGTTCAGGATGAAGCATTTTTTATTTGTAACTCGATAGGAGGCGTAGTTGGTCTGCAGGCAGCAGTTATGAAACCGCAGATTTGTAAAGGTATTGTTCTTCTAAACATATCTTTACGTATGCTTCATATCAAGAAGCAGCCTTGGTATGGGAAGCCATTGATCAAATCGTTTCAGAGTTTGCTGAGGTAA MAGALSSSLPFSKLPPSISSSKVTAGVLPSSLTFTHSFSPQLGLPRRAPAFYPIKSNGSLLSSQFGDQFDDQGLQISSENTRSQLQVRSCIWNWRGYSIRYQCAGDHGPALILIHGFGANSDHWRKNIPALAESHRVYAVDLIGYGYSDKPNPDLVGESFYTFETWASQLNDFCVDVVQDEAFFICNSIGGVVGLQAAVMKPQICKGIVLLNISLRMLHIKKQPWYGKPLIKSFQSLLR
BLAST of Carg13972 vs. NCBI nr
Match: XP_022958555.1 (pheophytinase, chloroplastic [Cucurbita moschata]) HSP 1 Score: 490.0 bits (1260), Expect = 4.7e-135 Identity = 239/239 (100.00%), Postives = 239/239 (100.00%), Query Frame = 0
BLAST of Carg13972 vs. NCBI nr
Match: XP_022995331.1 (pheophytinase, chloroplastic [Cucurbita maxima]) HSP 1 Score: 487.3 bits (1253), Expect = 3.1e-134 Identity = 237/239 (99.16%), Postives = 239/239 (100.00%), Query Frame = 0
BLAST of Carg13972 vs. NCBI nr
Match: XP_023533508.1 (pheophytinase, chloroplastic [Cucurbita pepo subsp. pepo]) HSP 1 Score: 478.4 bits (1230), Expect = 1.4e-131 Identity = 235/239 (98.33%), Postives = 235/239 (98.33%), Query Frame = 0
BLAST of Carg13972 vs. NCBI nr
Match: XP_004149647.1 (PREDICTED: pheophytinase, chloroplastic isoform X1 [Cucumis sativus]) HSP 1 Score: 380.9 bits (977), Expect = 3.1e-102 Identity = 187/234 (79.91%), Postives = 202/234 (86.32%), Query Frame = 0
BLAST of Carg13972 vs. NCBI nr
Match: KGN54028.1 (hypothetical protein Csa_4G269110 [Cucumis sativus]) HSP 1 Score: 380.9 bits (977), Expect = 3.1e-102 Identity = 187/234 (79.91%), Postives = 202/234 (86.32%), Query Frame = 0
BLAST of Carg13972 vs. TAIR10
Match: AT5G19850.1 (alpha/beta-Hydrolases superfamily protein) HSP 1 Score: 272.3 bits (695), Expect = 2.8e-73 Identity = 120/165 (72.73%), Postives = 144/165 (87.27%), Query Frame = 0
BLAST of Carg13972 vs. TAIR10
Match: AT4G36530.2 (alpha/beta-Hydrolases superfamily protein) HSP 1 Score: 110.9 bits (276), Expect = 1.1e-24 Identity = 54/121 (44.63%), Postives = 74/121 (61.16%), Query Frame = 0
BLAST of Carg13972 vs. TAIR10
Match: AT4G25290.1 (DNA photolyases;DNA photolyases) HSP 1 Score: 104.4 bits (259), Expect = 1.0e-22 Identity = 50/123 (40.65%), Postives = 74/123 (60.16%), Query Frame = 0
BLAST of Carg13972 vs. TAIR10
Match: AT5G38520.2 (alpha/beta-Hydrolases superfamily protein) HSP 1 Score: 95.9 bits (237), Expect = 3.6e-20 Identity = 58/150 (38.67%), Postives = 85/150 (56.67%), Query Frame = 0
BLAST of Carg13972 vs. TAIR10
Match: AT4G12830.1 (alpha/beta-Hydrolases superfamily protein) HSP 1 Score: 68.9 bits (167), Expect = 4.7e-12 Identity = 38/114 (33.33%), Postives = 59/114 (51.75%), Query Frame = 0
BLAST of Carg13972 vs. Swiss-Prot
Match: sp|P9WNH2|Y2715_MYCTO (Uncharacterized protein MT2788 OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) OX=83331 GN=MT2788 PE=3 SV=1) HSP 1 Score: 71.2 bits (173), Expect = 1.7e-11 Identity = 40/117 (34.19%), Postives = 62/117 (52.99%), Query Frame = 0
BLAST of Carg13972 vs. Swiss-Prot
Match: sp|P9WNH3|Y2715_MYCTU (Uncharacterized protein Rv2715 OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) OX=83332 GN=Rv2715 PE=1 SV=1) HSP 1 Score: 71.2 bits (173), Expect = 1.7e-11 Identity = 40/117 (34.19%), Postives = 62/117 (52.99%), Query Frame = 0
BLAST of Carg13972 vs. Swiss-Prot
Match: sp|P0A573|Y2734_MYCBO (Uncharacterized protein Mb2734 OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) OX=233413 GN=BQ2027_MB2734 PE=3 SV=1) HSP 1 Score: 71.2 bits (173), Expect = 1.7e-11 Identity = 40/117 (34.19%), Postives = 62/117 (52.99%), Query Frame = 0
BLAST of Carg13972 vs. Swiss-Prot
Match: sp|Q9FFZ1|PPH_ARATH (Pheophytinase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PPH PE=1 SV=1) HSP 1 Score: 67.8 bits (164), Expect = 1.9e-10 Identity = 36/136 (26.47%), Postives = 59/136 (43.38%), Query Frame = 0
BLAST of Carg13972 vs. Swiss-Prot
Match: sp|Q9AQM4|CARC_PSERE (2-hydroxy-6-oxo-6-(2'-aminophenyl)hexa-2,4-dienoic acid hydrolase OS=Pseudomonas resinovorans OX=53412 GN=carC PE=1 SV=1) HSP 1 Score: 66.2 bits (160), Expect = 5.5e-10 Identity = 43/123 (34.96%), Postives = 67/123 (54.47%), Query Frame = 0
BLAST of Carg13972 vs. TrEMBL
Match: tr|A0A0A0KX02|A0A0A0KX02_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G269110 PE=4 SV=1) HSP 1 Score: 380.9 bits (977), Expect = 2.0e-102 Identity = 187/234 (79.91%), Postives = 202/234 (86.32%), Query Frame = 0
BLAST of Carg13972 vs. TrEMBL
Match: tr|A0A1S3BMG0|A0A1S3BMG0_CUCME (pheophytinase, chloroplastic isoform X3 OS=Cucumis melo OX=3656 GN=LOC103491627 PE=4 SV=1) HSP 1 Score: 377.1 bits (967), Expect = 2.9e-101 Identity = 185/239 (77.41%), Postives = 202/239 (84.52%), Query Frame = 0
BLAST of Carg13972 vs. TrEMBL
Match: tr|A0A1S3BNP8|A0A1S3BNP8_CUCME (pheophytinase, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103491627 PE=4 SV=1) HSP 1 Score: 377.1 bits (967), Expect = 2.9e-101 Identity = 185/239 (77.41%), Postives = 202/239 (84.52%), Query Frame = 0
BLAST of Carg13972 vs. TrEMBL
Match: tr|M5WIC0|M5WIC0_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G143300 PE=4 SV=1) HSP 1 Score: 304.7 bits (779), Expect = 1.9e-79 Identity = 149/230 (64.78%), Postives = 181/230 (78.70%), Query Frame = 0
BLAST of Carg13972 vs. TrEMBL
Match: tr|A0A2P5CSX3|A0A2P5CSX3_PARAD (Alpha/beta hydrolase fold OS=Parasponia andersonii OX=3476 GN=PanWU01x14_126660 PE=4 SV=1) HSP 1 Score: 304.3 bits (778), Expect = 2.4e-79 Identity = 156/235 (66.38%), Postives = 186/235 (79.15%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: None |