Cucsa.146830 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.146830
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionRNA-binding family protein
Locationscaffold01100 : 170478 .. 173711 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGTCGTTGAAGGCATCCGTGATTGAGTGAGAATCGATAAGAACGCTTCGTCTACTTTAGCTTTGATTTGGGTTTTGCCTTCGCTGATCTGTACGGTAAGTTCCCTTTCTGTGTTTCGTTTTATTTTCGTTTGAGATGAAATGTTTGATCTGGATATGCATTTGATTCTGCTTTCGAACAGGCAGAATTAGGTTGGGGTTATTGTTTTATTGTTTTTTCTGTGATGAGCATGTGCATCCCTTTTTGTTGTTTGAGATGATATGTTCGGGGTTCTGATCGACATGCGCGTTTGATTCCGCTCTCTGTAATGTTTATGGAAAGAATTATATTCTGGTTATTGAGCGGGTTTTGTTTACTCTATGATTCGCTAGTTATGGGATGCAAATGGAGTAGTTTCTGTAATTTACTTGAAAATTTGATTGTTAAATTAGAACCACTTCGGAGATGTTGAAGTCAACCATATTTCTTTTTATTGGAGTCATGGATCTTAAATTGCTAATTTGGTATCATTTGGAGATCGTCCGAGTTTAATCAATTTGGTTTATAATTCTAATTTAGATCGATAGAAGTATAGAACACTCGTAAATATTCCTTGCAGTATGAATTATCTATGAAATTTTTATTAACGCATAAGGACTATTTTTTGAGGTTTTATTAAATCAAACTTAATTCGAATTTTTTTTTAAAACCATAGGACTAAACTAGCTTTCCCCAAACCATAGGAACTTAACTTGCAAGTTAATCTTTTCTTTACTTACGACAGCTCCTTGCGCTGTTCTGTTCAAGACGATATTCATACTTAATAGTACTCTTAACATTATGGTCTTCATCGACGCTTGTGCTTCTCGTTTTAAATCTCTGTTGAATTAAGTGATTTCTTGTTTGGTTCCAGATGTCGTACTCCCGAAGGTCTAGATACTCCCGCTCCCCATCATTCAAACGATCTGTCTCAAGGTCTCTCTCGAGGTCAAGAAGCCGTTCAAGGTACTTCCTAACCAGAAACCACTTACTTGCTTGATTTTCCCACCTTCTCTAAATGATACGATGATGCATTTATTCTTATTGTATGGATTCTTAATTCGTTTTTCAGGAGCCCATCAAGTGATGTTGAAAATCCTGGGAACAATTTGTATGTCACTGGGTTGTCACCTAGAATAACTAGAAGAGAACTCGAGAAGCATTTTTCTGCGGAGGGGACAGTATGTTCCTGATCTCTCATTTTTTGTTCATTCCTTCTTTCTTTTTTTCCTGGCATGCTATTCTTAGTGGCCGTGTATGTATTTTGTCTTTTGTGTTGGTGATTTAAGTTGTGGACTATCCCCCGTTCATGAATGGATGTCTTTAACTCCAGGTTCTAGATGTTCATCTTGTGGCCGATCCGTTGACTAGAGAATCTCGTGGATTTGGATTCATTACCATGTCTAGTAATGATGAGGCGGAAAATTGCATCAAATATCTGAATCGATCTGTACTTGAAGGTCGTATAATTACTGTGGAAAAGGTAAAAAGTGAACTAATTATCTCTTCATAGACTTGGGATGTTTCCTATTGTTACTGTTGTCTTGTTCTTTAATCTGAAATGGTGTACCTGGATGATTTGATGTTAGAGATTTGAGTTTTTTTTGCCAAGTGTTTTTTTGGCAGCAGGTTAGCTGTGTGTAGCAGCTCTTCATCAAACTCAAACTACAACTAAACAATCAAAACAAACACATGAAGCCTCAGAACATTGGGGTTGTATGCCCTGCATTTCTCTCTATTTCTGCCAATTGCATATGTGTTGAGTTATTAAAGTGTTTTAGCTTCTTTTTTCTTTTGTGAATCTCGACACTGTGACTTTGCATCCGTGCTATGGTATTTTTCTTGGATGGAAGCTTGAGTAGCTGGTCTCACTGTTTATCTTTAATTGTTTGACAGGCTCGGAGACGGAGAGGCAGAACTCCAACACCTGGTAGATATCTTGGACTTAGAACAGTTCATGGTGAGATTAAAATCCAATGTTTGGCATATTGCTGTGAAATATCTTTGATATTTCTGTCTAATCCTCATCATTCTGACAGGGAGGCGTAGGTCGCGTAGCTACTCATCTCGGCGTTCTCCCAGCTACTCTCCATATAGAAGAAGCTCTAGCCGCTCTACGCATTGTTCATCTGACCGGAGCAGAAGTAGATCCCGTTCCATTGACCAACATCGTAGAGCATATGGTTCCCCATACCATCGTAGATCGTACTCTTATAGCCGGCGAAGATATGATTCTCCAGACTATAGGCGACGTTATGATTCTCCAGACTACTATAGGCATCATAAGTCATATTCTCGATCTCGCTCACCATATAGGAGGTGGAGCCGTGACAGGTCATACTCACCTTGTGATCACTATTCCCCTGATCCTTACTACAGAAGGCACAGGTACAGGTCAGTTTCTCGGAGCCTTTCTCCGAAGTCAAGGAACAGCAGACATTACTCCCGAAGTTACTCTCCTGAGCCTAGGAGAAGAACGTTGAGAAACCACTATCGCAGCCCCTCACAGGAATTGAGTAGTTATTCACGTAGTATTTCCCCTGAACGAAGCAGATCAGGAAGCAGTATCTATTCATCCAGTATTTCTCCTGAACGAGGCAGGAGCTCAAGGAGTCGCTCTTGTAGCCATACACCAAGACGACACGAGAGCACACGTAAGAGAGGGTATTCTAGTAGGAGTCGATCGAGAAGCCAAAGTGTAACTTCAAGATCTGTTAGTCCGGCTTGATTAACTGATCTACTTCCCCTCTGCTACATTCTCATGATGATGTACATTTGGAGCTTTTAATACAAATCAATCAGCTGCAGATGTAAACAACTATTCCCCTTGTCTTACGGATGCCTTAGCGTTTGAGATGAAATAGTGGGTTGTGGAATAATTTATTTCTGGTTTGGTTTAATGGCGTACTAGGTGAAACGGAGAAATGTCGACAGGGAAAATGTTGTACGCTCTCAACTAATGTTCGTTCTTAATTCTATTGGGTTAGTTTGTTAACGAGGGGTGTGAAATGTTTTGGTTTAATTTGCCATTTGGATTTCCTACACTATTTGGGTTGGATGTTATGCCTTATCTGAACATGAAAAGATGCCGTACATTTGTGGTTTACCCTAATTGGATTATGCTGTTCTTTAACCTAATATAAACCTCATCTCTACTTTGGGAGTGGTATGAATTTTTTCGTGTATTACTATAAAATTTCTCCTATTCATCCAATAA

mRNA sequence

TGTCGTTGAAGGCATCCGTGATTGAGTGAGAATCGATAAGAACGCTTCGTCTACTTTAGCTTTGATTTGGGTTTTGCCTTCGCTGATCTGTACGATGTCGTACTCCCGAAGGTCTAGATACTCCCGCTCCCCATCATTCAAACGATCTGTCTCAAGGTCTCTCTCGAGGTCAAGAAGCCGTTCAAGGAGCCCATCAAGTGATGTTGAAAATCCTGGGAACAATTTGTATGTCACTGGGTTGTCACCTAGAATAACTAGAAGAGAACTCGAGAAGCATTTTTCTGCGGAGGGGACAGTTCTAGATGTTCATCTTGTGGCCGATCCGTTGACTAGAGAATCTCGTGGATTTGGATTCATTACCATGTCTAGTAATGATGAGGCGGAAAATTGCATCAAATATCTGAATCGATCTGTACTTGAAGGTCGTATAATTACTGTGGAAAAGGCTCGGAGACGGAGAGGCAGAACTCCAACACCTGGGAGGCGTAGGTCGCGTAGCTACTCATCTCGGCGTTCTCCCAGCTACTCTCCATATAGAAGAAGCTCTAGCCGCTCTACGCATTGTTCATCTGACCGGAGCAGAAGTAGATCCCGTTCCATTGACCAACATCGTAGAGCATATGGTTCCCCATACCATCGTAGATCGTACTCTTATAGCCGGCGAAGATATGATTCTCCAGACTATAGGCGACGTTATGATTCTCCAGACTACTATAGGCATCATAAGTCATATTCTCGATCTCGCTCACCATATAGGAGGTGGAGCCGTGACAGGTCATACTCACCTTGTGATCACTATTCCCCTGATCCTTACTACAGAAGGCACAGGTACAGGTCAGTTTCTCGGAGCCTTTCTCCGAAGTCAAGGAACAGCAGACATTACTCCCGAAGTTACTCTCCTGAGCCTAGGAGAAGAACGTTGAGAAACCACTATCGCAGCCCCTCACAGGAATTGAGTAGTTATTCACGTAGTATTTCCCCTGAACGAAGCAGATCAGGAAGCAGTATCTATTCATCCAGTATTTCTCCTGAACGAGGCAGGAGCTCAAGGAGTCGCTCTTGTAGCCATACACCAAGACGACACGAGAGCACACGTAAGAGAGGGTATTCTAGTAGGAGTCGATCGAGAAGCCAAAGTGTAACTTCAAGATCTGTTAGTCCGGCTTGATTAACTGATCTACTTCCCCTCTGCTACATTCTCATGATGATGTACATTTGGAGCTTTTAATACAAATCAATCAGCTGCAGATGTAAACAACTATTCCCCTTGTCTTACGGATGCCTTAGCGTTTGAGATGAAATAGTGGGTTGTGGAATAATTTATTTCTGGTTTGGTTTAATGGCGTACTAGGTGAAACGGAGAAATGTCGACAGGGAAAATGTTGTACGCTCTCAACTAATGTTCGTTCTTAATTCTATTGGGTTAGTTTGTTAACGAGGGGTGTGAAATGTTTTGGTTTAATTTGCCATTTGGATTTCCTACACTATTTGGGTTGGATGTTATGCCTTATCTGAACATGAAAAGATGCCGTACATTTGTGGTTTACCCTAATTGGATTATGCTGTTCTTTAACCTAATATAAACCTCATCTCTACTTTGGGAGTGGTATGAATTTTTTCGTGTATTACTATAAAATTTCTCCTATTCATCCAATAA

Coding sequence (CDS)

ATGTCGTACTCCCGAAGGTCTAGATACTCCCGCTCCCCATCATTCAAACGATCTGTCTCAAGGTCTCTCTCGAGGTCAAGAAGCCGTTCAAGGAGCCCATCAAGTGATGTTGAAAATCCTGGGAACAATTTGTATGTCACTGGGTTGTCACCTAGAATAACTAGAAGAGAACTCGAGAAGCATTTTTCTGCGGAGGGGACAGTTCTAGATGTTCATCTTGTGGCCGATCCGTTGACTAGAGAATCTCGTGGATTTGGATTCATTACCATGTCTAGTAATGATGAGGCGGAAAATTGCATCAAATATCTGAATCGATCTGTACTTGAAGGTCGTATAATTACTGTGGAAAAGGCTCGGAGACGGAGAGGCAGAACTCCAACACCTGGGAGGCGTAGGTCGCGTAGCTACTCATCTCGGCGTTCTCCCAGCTACTCTCCATATAGAAGAAGCTCTAGCCGCTCTACGCATTGTTCATCTGACCGGAGCAGAAGTAGATCCCGTTCCATTGACCAACATCGTAGAGCATATGGTTCCCCATACCATCGTAGATCGTACTCTTATAGCCGGCGAAGATATGATTCTCCAGACTATAGGCGACGTTATGATTCTCCAGACTACTATAGGCATCATAAGTCATATTCTCGATCTCGCTCACCATATAGGAGGTGGAGCCGTGACAGGTCATACTCACCTTGTGATCACTATTCCCCTGATCCTTACTACAGAAGGCACAGGTACAGGTCAGTTTCTCGGAGCCTTTCTCCGAAGTCAAGGAACAGCAGACATTACTCCCGAAGTTACTCTCCTGAGCCTAGGAGAAGAACGTTGAGAAACCACTATCGCAGCCCCTCACAGGAATTGAGTAGTTATTCACGTAGTATTTCCCCTGAACGAAGCAGATCAGGAAGCAGTATCTATTCATCCAGTATTTCTCCTGAACGAGGCAGGAGCTCAAGGAGTCGCTCTTGTAGCCATACACCAAGACGACACGAGAGCACACGTAAGAGAGGGTATTCTAGTAGGAGTCGATCGAGAAGCCAAAGTGTAACTTCAAGATCTGTTAGTCCGGCTTGA

Protein sequence

MSYSRRSRYSRSPSFKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSNDEAENCIKYLNRSVLEGRIITVEKARRRRGRTPTPGRRRSRSYSSRRSPSYSPYRRSSSRSTHCSSDRSRSRSRSIDQHRRAYGSPYHRRSYSYSRRRYDSPDYRRRYDSPDYYRHHKSYSRSRSPYRRWSRDRSYSPCDHYSPDPYYRRHRYRSVSRSLSPKSRNSRHYSRSYSPEPRRRTLRNHYRSPSQELSSYSRSISPERSRSGSSIYSSSISPERGRSSRSRSCSHTPRRHESTRKRGYSSRSRSRSQSVTSRSVSPA*
Homology
[Close]
BLAST of Cucsa.146830 vs. Swiss-Prot
Match: SR45A_ARATH (Serine/arginine-rich splicing factor SR45a OS=Arabidopsis thaliana GN=SR45A PE=1 SV=1)

HSP 1 Score: 286.6 bits (732), Expect = 3.9e-76
Identity = 204/381 (53.54%), Postives = 232/381 (60.89%), Query Frame = 1 

Query: 1   MSYSRRSRYSRSPS-FKRSVSRSLSRSRSRS--RSPSSDVENPGNNLYVTGLSPRITRRE 60
           MSYSRRSRYS S S + +   RS+SRS SRS  RS SSD ENPGN+LYVTGLS R+T R+
Sbjct: 31  MSYSRRSRYSPSLSPYDKRRGRSVSRSLSRSPTRSVSSDAENPGNSLYVTGLSHRVTERD 90

Query: 61  LEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSNDEAENCIKYLNRSVLEGRIITVEK 120
           LE HF+ EG V DVHLV DP TRESRGFGFI+M S  +A  CI+ L+ SVL+GR+ITVEK
Sbjct: 91  LEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSVLQGRVITVEK 150

Query: 121 ARRRRGRTPTPGRYLGLRTVHGRRRSRSYSSRRSPSYSPYRRSSSRSTHCSSDRSRSRSR 180
           ARRRRGRTPTPG+YLGLRT  GR +S SYS RRS S      S SRS   SSDR RS S 
Sbjct: 151 ARRRRGRTPTPGKYLGLRTARGRHKSPSYSPRRSVSC-----SRSRSRSYSSDRGRSYSP 210

Query: 181 SIDQHRRAYG-SPYHRRSYSYSRRRYDSPD--YRRRYDSPDYYRHHKSYSRSRSP-YRRW 240
           S  +  R+   SP++RR   YS  R  SPD  Y RR D            RS SP YRR 
Sbjct: 211 SYGRRGRSSSYSPFYRRRRFYSPSRSPSPDDRYNRRRD------------RSYSPYYRRR 270

Query: 241 SRDRSYS-PCDHYSPDPYYRRHRYRSVSRSLSPKSRNSRHYSRSYSPEPRRRTLRNHYRS 300
            R RSYS  C      PYY R RYRS SRS SP+ R +R  S S     R R+   HY+ 
Sbjct: 271 DRSRSYSRNCRARDRSPYYMR-RYRSRSRSYSPRYR-ARDRSCSPYYRGRDRSYSPHYQG 330

Query: 301 PSQELSSYSRSISPERSRSGS-----SIYSSSISPERGR-SSRSRSCSHTPRRHESTRKR 360
             +  S  SR     RS SGS        S SISP +GR  SRS+S     RRH+     
Sbjct: 331 RDRSYSPESRYYRRHRSVSGSVSPGGRSMSRSISPRKGRKESRSKS-----RRHDR---- 382

Query: 361 GYSSRSRSRS-QSVTSRSVSP 367
             SS   SRS +S TSRSVSP
Sbjct: 391 -QSSMCHSRSARSSTSRSVSP 382

[Close]
BLAST of Cucsa.146830 vs. Swiss-Prot
Match: YDC1_SCHPO (Uncharacterized RNA-binding protein C25G10.01 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC25G10.01 PE=1 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 1.1e-22
Identity = 74/227 (32.60%), Postives = 114/227 (50.22%), Query Frame = 1 

Query: 20  SRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPLT 79
           + S +  +   +S     EN GN+L+V+G++ R+   EL++ FS  GTV  V ++ +P+T
Sbjct: 79  NESTALDKKEPQSAPEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVT 138

Query: 80  RESRGFGFITMSSNDEAENCIKYLNRSVLEGRIITVEKARRRRGRTPTPGRYLGLRTVHG 139
           + SRGFGF++ S+ +EA + I  LN     GR++ V+KA+R R  +PTPG+Y+G      
Sbjct: 139 KASRGFGFLSFSTVEEATSAIDNLNSQEFYGRVLNVQKAKRSRPHSPTPGKYMG---YDR 198

Query: 140 RRRSRSYSSRRSPSYSPYRRSSSRSTHCSSDRSRSRSRSIDQHRRAYGSPYHRRSYSYSR 199
           RR SR + S        YRR++ R      DR  +R               +R SY  SR
Sbjct: 199 RRNSRDFPSNNKD--GGYRRNNYR------DRDSNR---------------YRNSYRPSR 258

Query: 200 RRYDSPDYRRRYDSPDYYRHHKSYSRSRSPYRRWSRDRSYSPCDHYS 247
                    +R  SP  YR  +    SR    R    RS++  +H+S
Sbjct: 259 --------PQREHSPGNYRKERYNVDSRPRRERHFHGRSFAHAEHHS 271

[Close]
BLAST of Cucsa.146830 vs. Swiss-Prot
Match: SC35_ARATH (Serine/arginine-rich splicing factor SC35 OS=Arabidopsis thaliana GN=SC35 PE=1 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.2e-21
Identity = 110/320 (34.38%), Postives = 142/320 (44.38%), Query Frame = 1 

Query: 43  NLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSNDEAENCIKY 102
           +L V  ++ R T  +L   F+  G V+DV +  D  T +SRGF F+     DEA   ++ 
Sbjct: 17  SLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVER 76

Query: 103 LNRSVLEGRIITVE---------------------KARRRRGRTPTPGRYLGLRTVHGRR 162
           L+  V++GR ITV+                     K+RR R R+P        R     R
Sbjct: 77  LDGRVVDGREITVQFAKYGPNAEKISKGRVVEPPPKSRRSRSRSP--------RRSRSPR 136

Query: 163 RSRSYSSRRSPSYSPYRRSSSRSTHCSSD-RSRSRSRSIDQHRRAYGSPY-HRRSYSYSR 222
           RSRS   RRSP  S   R  SR  +   D R RSRSRS D+  R       HRR    +R
Sbjct: 137 RSRSPPRRRSPRRSRSPRRRSRDDYREKDYRKRSRSRSYDRRERHEEKDRDHRRR---TR 196

Query: 223 RRYDSPDYRRRYDSPDYYRHHKSYSR--SRSPYRRWSRDRS---YSPCDHYSPDPYYRRH 282
            R  SPD +RR     Y    +S+SR  S SP RR  R  S    SP    SPD      
Sbjct: 197 SRSASPDEKRRVRG-RYDNESRSHSRSLSASPARRSPRSSSPQKTSPAREVSPDK----- 256

Query: 283 RYRSVSRSLSPKSRNSRHYSRSYSPEPRRRTLRNHYRSPSQELSSYSRSISPERSRSGSS 335
             RS  RS SP+        RS SP           RSP+ + +S S+ +SPER  +  S
Sbjct: 257 --RSNERSPSPR--------RSLSP-----------RSPALQKASPSKEMSPERRSNERS 298


HSP 2 Score: 61.6 bits (148), Expect = 2.1e-08
Identity = 62/185 (33.51%), Postives = 81/185 (43.78%), Query Frame = 1 

Query: 190 YHRRSYSYSRRRYDSPDYRRRYDSPDYYRHHKSYSRSRSPYRRWSRDRSYSP----CDHY 249
           Y   +   S+ R   P  + R       R  +S  RSRSP RR S  RS SP     D Y
Sbjct: 94  YGPNAEKISKGRVVEPPPKSRRSRSRSPRRSRSPRRSRSPPRRRSPRRSRSPRRRSRDDY 153

Query: 250 SPDPYYRRHRYRSVSRSLSPKSRNSRH----YSRSYSPEPRRRTLRNHYRSPSQELSSYS 309
               Y +R R RS  R    + ++  H     SRS SP+ +RR +R  Y + S+   S+S
Sbjct: 154 REKDYRKRSRSRSYDRRERHEEKDRDHRRRTRSRSASPDEKRR-VRGRYDNESR---SHS 213

Query: 310 RSIS---PERSRSGSSIYSSSISPERGRSSRSRSCSHTPRRHESTRKRGYSSRSRSRSQS 364
           RS+S     RS   SS   +S + E     RS   S +PRR  S R       S S+  S
Sbjct: 214 RSLSASPARRSPRSSSPQKTSPAREVSPDKRSNERSPSPRRSLSPRSPALQKASPSKEMS 273

[Close]
BLAST of Cucsa.146830 vs. Swiss-Prot
Match: SRSF2_PIG (Serine/arginine-rich splicing factor 2 OS=Sus scrofa GN=SRSF2 PE=2 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.7e-18
Identity = 81/212 (38.21%), Postives = 103/212 (48.58%), Query Frame = 1 

Query: 33  PSSDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSS 92
           P  DVE    +L V  L+ R +   L + F   G V DV++  D  T+ESRGF F+    
Sbjct: 6   PPPDVEGM-TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 65

Query: 93  NDEAENCIKYLNRSVLEGRIITVEKARRRR-------GRTPTPGRY----LGLRTVHGRR 152
             +AE+ +  ++ +VL+GR + V+ AR  R        R P P RY     G R+   RR
Sbjct: 66  KRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRRSRSPRR 125

Query: 153 ----RSRSYSSRRSPSYSPYRRSSSRSTHCSSDRSRSRSRSIDQHRRAYGSPYHRRSYSY 212
               RSRS S  RS S S Y RS SRS   S  RS S+SRS  + +    S    RS S 
Sbjct: 126 RRRSRSRSRSRSRSRSRSRYSRSKSRSRTRSRSRSTSKSRSARRSKSKSSSVSRSRSRSR 185

Query: 213 SRRRYDSPDYRRRYDSPDYYRHHKSYSRSRSP 230
           SR R  SP        P   R  KS SRS+SP
Sbjct: 186 SRSRSRSP-------PPASKRESKSRSRSKSP 209


HSP 2 Score: 82.8 bits (203), Expect = 8.6e-15
Identity = 84/240 (35.00%), Postives = 107/240 (44.58%), Query Frame = 1 

Query: 33  PSSDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSS 92
           P  DVE    +L V  L+ R +   L + F   G V DV++  D  T+ESRGF F+    
Sbjct: 6   PPPDVEGM-TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 65

Query: 93  NDEAENCIKYLNRSVLEGRIITVEKARRRRG-------RTPTPGRYLGLRTVHGRRRSRS 152
             +AE+ +  ++ +VL+GR + V+ AR  R        R P P RY G    +GRR    
Sbjct: 66  KRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGG--GGYGRR---- 125

Query: 153 YSSRRSPSYSPYRRSSSRSTHCSSDRSRSRSRSIDQHRRAYGSPYHRRSYSYSRRRYDSP 212
                  S SP RR  SRS   S  RSRSRSR             + RS S SR R  S 
Sbjct: 126 -------SRSPRRRRRSRSRSRSRSRSRSRSR-------------YSRSKSRSRTRSRSR 185

Query: 213 DYRRRYDSPDYYRHHKSYSRSRSPYRRWSRDRSYSPCDHYSPDPYYRRHRYRSVSRSLSP 266
              +   +        S SRSRS  R  SR R        SP P  +R   +S SRS SP
Sbjct: 186 STSKSRSARRSKSKSSSVSRSRSRSRSRSRSR--------SPPPASKRES-KSRSRSKSP 209


HSP 3 Score: 48.5 bits (114), Expect = 1.8e-04
Identity = 57/150 (38.00%), Postives = 65/150 (43.33%), Query Frame = 1 

Query: 190 YHRRSYSYSRRRYDSPDYRRRYDSPDYYRHHKSYSRSRSPYRRWSRDRSYSPCDHYSPDP 249
           Y R   S+  RR   P   RRY    Y R      RSRSP RR                 
Sbjct: 92  YGRPPDSHHSRRGPPP---RRYGGGGYGR------RSRSPRRR----------------- 151

Query: 250 YYRRHRYRSVSRSLSPKSRNSRHYSRSYSPEPRRRTLRNHYRSPSQELSSYSRSISPERS 309
             RR R RS SRS   +SR+   YSRS S    R   R+  +S S   S  S+S S  RS
Sbjct: 152 --RRSRSRSRSRS---RSRSRSRYSRSKSRSRTRSRSRSTSKSRSARRSK-SKSSSVSRS 209

Query: 310 RSGSSIYSSSISPERG--RSSRSRSCSHTP 338
           RS S   S S SP     R S+SRS S +P
Sbjct: 212 RSRSRSRSRSRSPPPASKRESKSRSRSKSP 209


HSP 4 Score: 41.6 bits (96), Expect = 2.2e-02
Identity = 45/102 (44.12%), Postives = 51/102 (50.00%), Query Frame = 1 

Query: 272 HYSRSYSPEPRRRT---LRNHYRSPSQELSSYSRSISPERSRSGSSIYSSSISPERGRSS 331
           H+SR   P PRR          RSP +   S SRS S  RSRS S  YS S S      S
Sbjct: 99  HHSRR-GPPPRRYGGGGYGRRSRSPRRRRRSRSRSRSRSRSRSRSR-YSRSKS-----RS 158

Query: 332 RSRSCSHTPRRHESTR----KRGYSSRSRSRSQSVTSRSVSP 367
           R+RS S +  +  S R    K    SRSRSRS+S  SRS SP
Sbjct: 159 RTRSRSRSTSKSRSARRSKSKSSSVSRSRSRSRS-RSRSRSP 192


HSP 5 Score: 35.8 bits (81), Expect = 1.2e+00
Identity = 21/32 (65.62%), Postives = 23/32 (71.88%), Query Frame = 1 

Query: 2   SYSRRSRYSRSPSFKRSVSRSLSRSRSRSRSP 34
           S SR +R S+S S   S SRS SRSRSRSRSP
Sbjct: 161 SKSRSARRSKSKSSSVSRSRSRSRSRSRSRSP 192


HSP 6 Score: 34.3 bits (77), Expect = 3.5e+00
Identity = 21/38 (55.26%), Postives = 24/38 (63.16%), Query Frame = 1 

Query: 2   SYSRRSRYSRSPSFKRSVSRSLSRSRSRSRSPSSDVEN 40
           S S R   S+S S  RS SRS SRSRSRS  P+S  E+
Sbjct: 163 SRSARRSKSKSSSVSRSRSRSRSRSRSRSPPPASKRES 200


HSP 7 Score: 32.3 bits (72), Expect = 1.3e+01
Identity = 21/36 (58.33%), Postives = 24/36 (66.67%), Query Frame = 1 

Query: 6   RSRYSRSPSFKRSVSRSLSRSRS----RSRSPSSDV 38
           RSRYSRS S  R+ SRS S S+S    RS+S SS V
Sbjct: 141 RSRYSRSKSRSRTRSRSRSTSKSRSARRSKSKSSSV 176


HSP 8 Score: 32.0 bits (71), Expect = 1.7e+01
Identity = 20/39 (51.28%), Postives = 23/39 (58.97%), Query Frame = 1 

Query: 2   SYSRRSRYSRSPSFKRSVSRSLSRSRSRSRSPSSDVENP 41
           S SR +  SRS    +S S S+SRSRSRSRS S     P
Sbjct: 155 SRSRSTSKSRSARRSKSKSSSVSRSRSRSRSRSRSRSPP 193


HSP 9 Score: 32.0 bits (71), Expect = 1.7e+01
Identity = 20/30 (66.67%), Postives = 21/30 (70.00%), Query Frame = 1 

Query: 3   YSRRSRYSRSPSFKRSVSRSLSRSRSRSRS 33
           Y RRSR  R    +RS SRS SRSRSRSRS
Sbjct: 115 YGRRSRSPRRR--RRSRSRSRSRSRSRSRS 142


HSP 10 Score: 30.0 bits (66), Expect = 6.6e+01
Identity = 22/49 (44.90%), Postives = 25/49 (51.02%), Query Frame = 1 

Query: 2   SYSRRSRYSRSPSFKRSVSRSL---------SRSRSRSRSPSSDVENPG 42
           S S+ S  SRS S  RS SRS          S+SRSRS+SP    E  G
Sbjct: 169 SKSKSSSVSRSRSRSRSRSRSRSPPPASKRESKSRSRSKSPPKSPEEEG 217


HSP 11 Score: 29.6 bits (65), Expect = 8.6e+01
Identity = 21/38 (55.26%), Postives = 23/38 (60.53%), Query Frame = 1 

Query: 5   RRSRYSRSPSFKRS-------VSRSLSRSRSRSRSPSS 36
           RR R SRS S  RS        SRS SRSR+RSRS S+
Sbjct: 123 RRRRRSRSRSRSRSRSRSRSRYSRSKSRSRTRSRSRST 160


HSP 12 Score: 29.3 bits (64), Expect = 1.1e+02
Identity = 23/43 (53.49%), Postives = 23/43 (53.49%), Query Frame = 1 

Query: 2   SYSRRSRYSRSPSFKR----------SVSRSLSRSRSRSRSPS 35
           S SR    SRS S  R          SVSRS SRSRSRSRS S
Sbjct: 149 SRSRTRSRSRSTSKSRSARRSKSKSSSVSRSRSRSRSRSRSRS 191

[Close]
BLAST of Cucsa.146830 vs. Swiss-Prot
Match: SRSF2_HUMAN (Serine/arginine-rich splicing factor 2 OS=Homo sapiens GN=SRSF2 PE=1 SV=4)

HSP 1 Score: 94.7 bits (234), Expect = 2.2e-18
Identity = 81/212 (38.21%), Postives = 103/212 (48.58%), Query Frame = 1 

Query: 33  PSSDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSS 92
           P  DVE    +L V  L+ R +   L + F   G V DV++  D  T+ESRGF F+    
Sbjct: 6   PPPDVEGM-TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 65

Query: 93  NDEAENCIKYLNRSVLEGRIITVEKARRRR-------GRTPTPGRY----LGLRTVHGRR 152
             +AE+ +  ++ +VL+GR + V+ AR  R        R P P RY     G R+   RR
Sbjct: 66  KRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRRSRSPRR 125

Query: 153 ----RSRSYSSRRSPSYSPYRRSSSRSTHCSSDRSRSRSRSIDQHRRAYGSPYHRRSYSY 212
               RSRS S  RS S S Y RS SRS   S  RS S+SRS  + +    S    RS S 
Sbjct: 126 RRRSRSRSRSRSRSRSRSRYSRSKSRSRTRSRSRSTSKSRSARRSKSKSSSVSRSRSRSR 185

Query: 213 SRRRYDSPDYRRRYDSPDYYRHHKSYSRSRSP 230
           SR R  SP        P   R  KS SRS+SP
Sbjct: 186 SRSRSRSP-------PPVSKRESKSRSRSKSP 209


HSP 2 Score: 83.2 bits (204), Expect = 6.6e-15
Identity = 84/240 (35.00%), Postives = 107/240 (44.58%), Query Frame = 1 

Query: 33  PSSDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSS 92
           P  DVE    +L V  L+ R +   L + F   G V DV++  D  T+ESRGF F+    
Sbjct: 6   PPPDVEGM-TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 65

Query: 93  NDEAENCIKYLNRSVLEGRIITVEKARRRRG-------RTPTPGRYLGLRTVHGRRRSRS 152
             +AE+ +  ++ +VL+GR + V+ AR  R        R P P RY G    +GRR    
Sbjct: 66  KRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGG--GGYGRR---- 125

Query: 153 YSSRRSPSYSPYRRSSSRSTHCSSDRSRSRSRSIDQHRRAYGSPYHRRSYSYSRRRYDSP 212
                  S SP RR  SRS   S  RSRSRSR             + RS S SR R  S 
Sbjct: 126 -------SRSPRRRRRSRSRSRSRSRSRSRSR-------------YSRSKSRSRTRSRSR 185

Query: 213 DYRRRYDSPDYYRHHKSYSRSRSPYRRWSRDRSYSPCDHYSPDPYYRRHRYRSVSRSLSP 266
              +   +        S SRSRS  R  SR R        SP P  +R   +S SRS SP
Sbjct: 186 STSKSRSARRSKSKSSSVSRSRSRSRSRSRSR--------SPPPVSKRES-KSRSRSKSP 209


HSP 3 Score: 48.1 bits (113), Expect = 2.3e-04
Identity = 57/150 (38.00%), Postives = 65/150 (43.33%), Query Frame = 1 

Query: 190 YHRRSYSYSRRRYDSPDYRRRYDSPDYYRHHKSYSRSRSPYRRWSRDRSYSPCDHYSPDP 249
           Y R   S+  RR   P   RRY    Y R      RSRSP RR                 
Sbjct: 92  YGRPPDSHHSRRGPPP---RRYGGGGYGR------RSRSPRRR----------------- 151

Query: 250 YYRRHRYRSVSRSLSPKSRNSRHYSRSYSPEPRRRTLRNHYRSPSQELSSYSRSISPERS 309
             RR R RS SRS   +SR+   YSRS S    R   R+  +S S   S  S+S S  RS
Sbjct: 152 --RRSRSRSRSRS---RSRSRSRYSRSKSRSRTRSRSRSTSKSRSARRSK-SKSSSVSRS 209

Query: 310 RSGSSIYSSSISPE--RGRSSRSRSCSHTP 338
           RS S   S S SP     R S+SRS S +P
Sbjct: 212 RSRSRSRSRSRSPPPVSKRESKSRSRSKSP 209


HSP 4 Score: 41.6 bits (96), Expect = 2.2e-02
Identity = 45/102 (44.12%), Postives = 51/102 (50.00%), Query Frame = 1 

Query: 272 HYSRSYSPEPRRRT---LRNHYRSPSQELSSYSRSISPERSRSGSSIYSSSISPERGRSS 331
           H+SR   P PRR          RSP +   S SRS S  RSRS S  YS S S      S
Sbjct: 99  HHSRR-GPPPRRYGGGGYGRRSRSPRRRRRSRSRSRSRSRSRSRSR-YSRSKS-----RS 158

Query: 332 RSRSCSHTPRRHESTR----KRGYSSRSRSRSQSVTSRSVSP 367
           R+RS S +  +  S R    K    SRSRSRS+S  SRS SP
Sbjct: 159 RTRSRSRSTSKSRSARRSKSKSSSVSRSRSRSRS-RSRSRSP 192


HSP 5 Score: 35.8 bits (81), Expect = 1.2e+00
Identity = 21/32 (65.62%), Postives = 23/32 (71.88%), Query Frame = 1 

Query: 2   SYSRRSRYSRSPSFKRSVSRSLSRSRSRSRSP 34
           S SR +R S+S S   S SRS SRSRSRSRSP
Sbjct: 161 SKSRSARRSKSKSSSVSRSRSRSRSRSRSRSP 192


HSP 6 Score: 32.3 bits (72), Expect = 1.3e+01
Identity = 21/36 (58.33%), Postives = 24/36 (66.67%), Query Frame = 1 

Query: 6   RSRYSRSPSFKRSVSRSLSRSRS----RSRSPSSDV 38
           RSRYSRS S  R+ SRS S S+S    RS+S SS V
Sbjct: 141 RSRYSRSKSRSRTRSRSRSTSKSRSARRSKSKSSSV 176


HSP 7 Score: 32.0 bits (71), Expect = 1.7e+01
Identity = 20/39 (51.28%), Postives = 23/39 (58.97%), Query Frame = 1 

Query: 2   SYSRRSRYSRSPSFKRSVSRSLSRSRSRSRSPSSDVENP 41
           S SR +  SRS    +S S S+SRSRSRSRS S     P
Sbjct: 155 SRSRSTSKSRSARRSKSKSSSVSRSRSRSRSRSRSRSPP 193


HSP 8 Score: 32.0 bits (71), Expect = 1.7e+01
Identity = 20/30 (66.67%), Postives = 21/30 (70.00%), Query Frame = 1 

Query: 3   YSRRSRYSRSPSFKRSVSRSLSRSRSRSRS 33
           Y RRSR  R    +RS SRS SRSRSRSRS
Sbjct: 115 YGRRSRSPRRR--RRSRSRSRSRSRSRSRS 142


HSP 9 Score: 30.8 bits (68), Expect = 3.9e+01
Identity = 21/43 (48.84%), Postives = 24/43 (55.81%), Query Frame = 1 

Query: 2   SYSRRSRYSRSPSFKRS---VSRSLSRSRSRSRSPSSDVENPG 42
           S SR    SRS S  RS   VS+  S+SRSRS+SP    E  G
Sbjct: 175 SVSRSRSRSRSRSRSRSPPPVSKRESKSRSRSKSPPKSPEEEG 217


HSP 10 Score: 29.6 bits (65), Expect = 8.6e+01
Identity = 21/38 (55.26%), Postives = 23/38 (60.53%), Query Frame = 1 

Query: 5   RRSRYSRSPSFKRS-------VSRSLSRSRSRSRSPSS 36
           RR R SRS S  RS        SRS SRSR+RSRS S+
Sbjct: 123 RRRRRSRSRSRSRSRSRSRSRYSRSKSRSRTRSRSRST 160


HSP 11 Score: 29.3 bits (64), Expect = 1.1e+02
Identity = 23/43 (53.49%), Postives = 23/43 (53.49%), Query Frame = 1 

Query: 2   SYSRRSRYSRSPSFKR----------SVSRSLSRSRSRSRSPS 35
           S SR    SRS S  R          SVSRS SRSRSRSRS S
Sbjct: 149 SRSRTRSRSRSTSKSRSARRSKSKSSSVSRSRSRSRSRSRSRS 191

[Close]
BLAST of Cucsa.146830 vs. TrEMBL
Match: A0A0A0LXJ6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G528490 PE=4 SV=1)

HSP 1 Score: 741.5 bits (1913), Expect = 5.0e-211
Identity = 367/367 (100.00%), Postives = 367/367 (100.00%), Query Frame = 1 

Query: 1   MSYSRRSRYSRSPSFKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK 60
           MSYSRRSRYSRSPSFKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK
Sbjct: 1   MSYSRRSRYSRSPSFKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK 60

Query: 61  HFSAEGTVLDVHLVADPLTRESRGFGFITMSSNDEAENCIKYLNRSVLEGRIITVEKARR 120
           HFSAEGTVLDVHLVADPLTRESRGFGFITMSSNDEAENCIKYLNRSVLEGRIITVEKARR
Sbjct: 61  HFSAEGTVLDVHLVADPLTRESRGFGFITMSSNDEAENCIKYLNRSVLEGRIITVEKARR 120

Query: 121 RRGRTPTPGRYLGLRTVHGRRRSRSYSSRRSPSYSPYRRSSSRSTHCSSDRSRSRSRSID 180
           RRGRTPTPGRYLGLRTVHGRRRSRSYSSRRSPSYSPYRRSSSRSTHCSSDRSRSRSRSID
Sbjct: 121 RRGRTPTPGRYLGLRTVHGRRRSRSYSSRRSPSYSPYRRSSSRSTHCSSDRSRSRSRSID 180

Query: 181 QHRRAYGSPYHRRSYSYSRRRYDSPDYRRRYDSPDYYRHHKSYSRSRSPYRRWSRDRSYS 240
           QHRRAYGSPYHRRSYSYSRRRYDSPDYRRRYDSPDYYRHHKSYSRSRSPYRRWSRDRSYS
Sbjct: 181 QHRRAYGSPYHRRSYSYSRRRYDSPDYRRRYDSPDYYRHHKSYSRSRSPYRRWSRDRSYS 240

Query: 241 PCDHYSPDPYYRRHRYRSVSRSLSPKSRNSRHYSRSYSPEPRRRTLRNHYRSPSQELSSY 300
           PCDHYSPDPYYRRHRYRSVSRSLSPKSRNSRHYSRSYSPEPRRRTLRNHYRSPSQELSSY
Sbjct: 241 PCDHYSPDPYYRRHRYRSVSRSLSPKSRNSRHYSRSYSPEPRRRTLRNHYRSPSQELSSY 300

Query: 301 SRSISPERSRSGSSIYSSSISPERGRSSRSRSCSHTPRRHESTRKRGYSSRSRSRSQSVT 360
           SRSISPERSRSGSSIYSSSISPERGRSSRSRSCSHTPRRHESTRKRGYSSRSRSRSQSVT
Sbjct: 301 SRSISPERSRSGSSIYSSSISPERGRSSRSRSCSHTPRRHESTRKRGYSSRSRSRSQSVT 360

Query: 361 SRSVSPA 368
           SRSVSPA
Sbjct: 361 SRSVSPA 367

[Close]
BLAST of Cucsa.146830 vs. TrEMBL
Match: B9S368_RICCO (FUS-interacting serine-arginine-rich protein 1, putative OS=Ricinus communis GN=RCOM_0730610 PE=4 SV=1)

HSP 1 Score: 398.3 bits (1022), Expect = 1.0e-107
Identity = 241/397 (60.71%), Postives = 273/397 (68.77%), Query Frame = 1 

Query: 1   MSYSRRSRYSRSPS----FKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRR 60
           MSYS+RSRYS SPS    + RSVSRS+SRSRSRSRSPSSDVENPGNNLYVTGLSPRIT+R
Sbjct: 2   MSYSKRSRYSPSPSPYRRYSRSVSRSMSRSRSRSRSPSSDVENPGNNLYVTGLSPRITKR 61

Query: 61  ELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSNDEAENCIKYLNRSVLEGRIITVE 120
           +LEKHF++EG V+DVHLV DP TRESRGFGF+TMS+  EA+ CIKYLNRSVLEGR+ITVE
Sbjct: 62  DLEKHFASEGKVIDVHLVVDPWTRESRGFGFVTMSTLVEADRCIKYLNRSVLEGRVITVE 121

Query: 121 KARRRRGRTPTPGRYLGLRTVHGRRRSRSYSSRRSPSYSPYRRSSSRSTHCSSDRSRSRS 180
           KA+RRRGRTPTPGRYLGLRT+  RR + S+S  RSPSYS YR S SRS   SS+RSRSRS
Sbjct: 122 KAKRRRGRTPTPGRYLGLRTIRVRRLTPSHSPHRSPSYSRYRGSLSRSPRYSSERSRSRS 181

Query: 181 RSIDQHRRA--------YGSPYHRRSYS--YSRRRYDSPDYR-RRYDSPDYYRHHKSYSR 240
            S    RR+        YG     RSYS  Y RRR  SP YR RR  SP YY  H+SYSR
Sbjct: 182 YSPHYRRRSRSRSFSPSYGRRSRSRSYSPYYRRRRSYSPYYRSRRSYSPYYYSRHRSYSR 241

Query: 241 SRSPYRR---WSRDRSYSPCDHYSPDP---YYRRHRYRSVSRSLSPKSRNS-RHYSRSYS 300
           SRSPY R      DRSYSP       P   YYRRHR+RSVS S   ++R S R YSRS S
Sbjct: 242 SRSPYSRSPVSRHDRSYSPYGSRYDSPGERYYRRHRHRSVSSSPGRRTRRSARSYSRSIS 301

Query: 301 PEPRRRTLRNHYRS----PSQELSSYSRSISPERSRSGSSIYSSSISPER---GRSSRSR 360
           P PRR + R++  S    P     SYSRS SP   +S    YS SISP R    R SRSR
Sbjct: 302 PSPRRSSRRSYSSSRSPPPRSSRKSYSRSPSPRMRKSLKRSYSRSISPIRRKSSRRSRSR 361

Query: 361 SCSHTPRRHES-TRKRGYSSRSRSRSQSVTSRSVSPA 368
           S S      ++ +R R  S+ SRS S+S T RS SP+
Sbjct: 362 SASSVHDSQDTYSRSRNLSASSRSVSRSPTPRSASPS 398

[Close]
BLAST of Cucsa.146830 vs. TrEMBL
Match: A0A0R0IW62_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_08G334100 PE=4 SV=1)

HSP 1 Score: 385.2 bits (988), Expect = 9.0e-104
Identity = 237/385 (61.56%), Postives = 264/385 (68.57%), Query Frame = 1 

Query: 1   MSYSRRSRYSRSPS----FKRSVSRSLSR--SRSRSRSPSSDVENPGNNLYVTGLSPRIT 60
           MSYSRRSRYSRSPS    + RSVSRSLSR  SRSRSRS S D ENPGNNLYVTGLSPRIT
Sbjct: 1   MSYSRRSRYSRSPSPYKRYSRSVSRSLSRTSSRSRSRSLSRDAENPGNNLYVTGLSPRIT 60

Query: 61  RRELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSNDEAENCIKYLNRSVLEGRIIT 120
           +RELEKHFSAEG V+DVHLV DP TRESRGFGF+TM + +EA+ C+KYLNRSVLEGR+IT
Sbjct: 61  KRELEKHFSAEGKVIDVHLVVDPWTRESRGFGFVTMETLEEADRCVKYLNRSVLEGRVIT 120

Query: 121 VEKARRRRGRTPTPGRYLGLRTVHGRRRSRSYSSRRSPSYSPYRRSSSRSTHCSSDRSRS 180
           VEKA+RRRGRTPTPG+YLGLRT+  +RRS S S RRSPSYSPYRRS SRS + SSDRSRS
Sbjct: 121 VEKAKRRRGRTPTPGKYLGLRTIRAQRRSPSDSPRRSPSYSPYRRSYSRSPY-SSDRSRS 180

Query: 181 RSRSIDQHRRAYGSPYHRRSYSYSRRRYDSPDYRRRYDSPDYYRHHKSYSRSRSPYRRWS 240
           RS S D  RR    PYH R  SYS        Y  RY S   Y  H+SYSRS SPY R  
Sbjct: 181 RSYSPDYRRRKSNYPYHSRRRSYS-------PYYSRYRSYSRYDRHRSYSRSCSPYSRSP 240

Query: 241 ---RDRSYSPCD--HYSPDPY-YRRHRYRSVSRSLSPKSRNSR--HY---SRSYSPEPRR 300
              RDRSYSP D  + SPD + YRRH YRSVSR  SP  R  R  HY   SRS SP PRR
Sbjct: 241 VSIRDRSYSPYDSRYDSPDDHSYRRHHYRSVSRGASPDDRYYRRHHYRSVSRSASPRPRR 300

Query: 301 RTLRNHYRSPSQELSSYSRSISPERSRSGSSIYSSSISPERGRSSRSRSCSHTPRRHES- 360
           R+ R           SYSRS +P   RS     S S+SP R R S SRS   + +  +  
Sbjct: 301 RSRR-----------SYSRSATPVSKRSN----SRSVSP-RSRKSHSRSSKRSGKYEKHY 360

Query: 361 TRKRGYSSRSRSRSQSVTSRSVSPA 368
           +R    S+ SRS S+S T RS SP+
Sbjct: 361 SRSPSVSASSRSVSRSNTPRSTSPS 361

[Close]
BLAST of Cucsa.146830 vs. TrEMBL
Match: A0A0B2NXN8_GLYSO (Putative RNA-binding protein C25G10.01 OS=Glycine soja GN=glysoja_028457 PE=4 SV=1)

HSP 1 Score: 385.2 bits (988), Expect = 9.0e-104
Identity = 237/385 (61.56%), Postives = 264/385 (68.57%), Query Frame = 1 

Query: 1   MSYSRRSRYSRSPS----FKRSVSRSLSR--SRSRSRSPSSDVENPGNNLYVTGLSPRIT 60
           MSYSRRSRYSRSPS    + RSVSRSLSR  SRSRSRS S D ENPGNNLYVTGLSPRIT
Sbjct: 1   MSYSRRSRYSRSPSPYKRYSRSVSRSLSRTSSRSRSRSLSRDAENPGNNLYVTGLSPRIT 60

Query: 61  RRELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSNDEAENCIKYLNRSVLEGRIIT 120
           +RELEKHFSAEG V+DVHLV DP TRESRGFGF+TM + +EA+ C+KYLNRSVLEGR+IT
Sbjct: 61  KRELEKHFSAEGKVIDVHLVVDPWTRESRGFGFVTMETLEEADRCVKYLNRSVLEGRVIT 120

Query: 121 VEKARRRRGRTPTPGRYLGLRTVHGRRRSRSYSSRRSPSYSPYRRSSSRSTHCSSDRSRS 180
           VEKA+RRRGRTPTPG+YLGLRT+  +RRS S S RRSPSYSPYRRS SRS + SSDRSRS
Sbjct: 121 VEKAKRRRGRTPTPGKYLGLRTIRAQRRSPSDSPRRSPSYSPYRRSYSRSPY-SSDRSRS 180

Query: 181 RSRSIDQHRRAYGSPYHRRSYSYSRRRYDSPDYRRRYDSPDYYRHHKSYSRSRSPYRRWS 240
           RS S D  RR    PYH R  SYS        Y  RY S   Y  H+SYSRS SPY R  
Sbjct: 181 RSYSPDYRRRKSNYPYHSRRRSYS-------PYYSRYRSYSRYDRHRSYSRSCSPYSRSP 240

Query: 241 ---RDRSYSPCD--HYSPDPY-YRRHRYRSVSRSLSPKSRNSR--HY---SRSYSPEPRR 300
              RDRSYSP D  + SPD + YRRH YRSVSR  SP  R  R  HY   SRS SP PRR
Sbjct: 241 VSIRDRSYSPYDSRYDSPDDHSYRRHHYRSVSRGASPDDRYYRRHHYRSVSRSASPRPRR 300

Query: 301 RTLRNHYRSPSQELSSYSRSISPERSRSGSSIYSSSISPERGRSSRSRSCSHTPRRHES- 360
           R+ R           SYSRS +P   RS     S S+SP R R S SRS   + +  +  
Sbjct: 301 RSRR-----------SYSRSATPVSKRSN----SRSVSP-RSRKSHSRSSKRSGKYEKHY 360

Query: 361 TRKRGYSSRSRSRSQSVTSRSVSPA 368
           +R    S+ SRS S+S T RS SP+
Sbjct: 361 SRSPSVSASSRSVSRSNTPRSTSPS 361

[Close]
BLAST of Cucsa.146830 vs. TrEMBL
Match: A0A0R0J3B8_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_08G334100 PE=4 SV=1)

HSP 1 Score: 385.2 bits (988), Expect = 9.0e-104
Identity = 237/385 (61.56%), Postives = 264/385 (68.57%), Query Frame = 1 

Query: 1   MSYSRRSRYSRSPS----FKRSVSRSLSR--SRSRSRSPSSDVENPGNNLYVTGLSPRIT 60
           MSYSRRSRYSRSPS    + RSVSRSLSR  SRSRSRS S D ENPGNNLYVTGLSPRIT
Sbjct: 15  MSYSRRSRYSRSPSPYKRYSRSVSRSLSRTSSRSRSRSLSRDAENPGNNLYVTGLSPRIT 74

Query: 61  RRELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSNDEAENCIKYLNRSVLEGRIIT 120
           +RELEKHFSAEG V+DVHLV DP TRESRGFGF+TM + +EA+ C+KYLNRSVLEGR+IT
Sbjct: 75  KRELEKHFSAEGKVIDVHLVVDPWTRESRGFGFVTMETLEEADRCVKYLNRSVLEGRVIT 134

Query: 121 VEKARRRRGRTPTPGRYLGLRTVHGRRRSRSYSSRRSPSYSPYRRSSSRSTHCSSDRSRS 180
           VEKA+RRRGRTPTPG+YLGLRT+  +RRS S S RRSPSYSPYRRS SRS + SSDRSRS
Sbjct: 135 VEKAKRRRGRTPTPGKYLGLRTIRAQRRSPSDSPRRSPSYSPYRRSYSRSPY-SSDRSRS 194

Query: 181 RSRSIDQHRRAYGSPYHRRSYSYSRRRYDSPDYRRRYDSPDYYRHHKSYSRSRSPYRRWS 240
           RS S D  RR    PYH R  SYS        Y  RY S   Y  H+SYSRS SPY R  
Sbjct: 195 RSYSPDYRRRKSNYPYHSRRRSYS-------PYYSRYRSYSRYDRHRSYSRSCSPYSRSP 254

Query: 241 ---RDRSYSPCD--HYSPDPY-YRRHRYRSVSRSLSPKSRNSR--HY---SRSYSPEPRR 300
              RDRSYSP D  + SPD + YRRH YRSVSR  SP  R  R  HY   SRS SP PRR
Sbjct: 255 VSIRDRSYSPYDSRYDSPDDHSYRRHHYRSVSRGASPDDRYYRRHHYRSVSRSASPRPRR 314

Query: 301 RTLRNHYRSPSQELSSYSRSISPERSRSGSSIYSSSISPERGRSSRSRSCSHTPRRHES- 360
           R+ R           SYSRS +P   RS     S S+SP R R S SRS   + +  +  
Sbjct: 315 RSRR-----------SYSRSATPVSKRSN----SRSVSP-RSRKSHSRSSKRSGKYEKHY 374

Query: 361 TRKRGYSSRSRSRSQSVTSRSVSPA 368
           +R    S+ SRS S+S T RS SP+
Sbjct: 375 SRSPSVSASSRSVSRSNTPRSTSPS 375

[Close]
BLAST of Cucsa.146830 vs. TAIR10
Match: AT1G07350.1 (AT1G07350.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 286.6 bits (732), Expect = 2.2e-77
Identity = 204/381 (53.54%), Postives = 232/381 (60.89%), Query Frame = 1 

Query: 1   MSYSRRSRYSRSPS-FKRSVSRSLSRSRSRS--RSPSSDVENPGNNLYVTGLSPRITRRE 60
           MSYSRRSRYS S S + +   RS+SRS SRS  RS SSD ENPGN+LYVTGLS R+T R+
Sbjct: 31  MSYSRRSRYSPSLSPYDKRRGRSVSRSLSRSPTRSVSSDAENPGNSLYVTGLSHRVTERD 90

Query: 61  LEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSNDEAENCIKYLNRSVLEGRIITVEK 120
           LE HF+ EG V DVHLV DP TRESRGFGFI+M S  +A  CI+ L+ SVL+GR+ITVEK
Sbjct: 91  LEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSVLQGRVITVEK 150

Query: 121 ARRRRGRTPTPGRYLGLRTVHGRRRSRSYSSRRSPSYSPYRRSSSRSTHCSSDRSRSRSR 180
           ARRRRGRTPTPG+YLGLRT  GR +S SYS RRS S      S SRS   SSDR RS S 
Sbjct: 151 ARRRRGRTPTPGKYLGLRTARGRHKSPSYSPRRSVSC-----SRSRSRSYSSDRGRSYSP 210

Query: 181 SIDQHRRAYG-SPYHRRSYSYSRRRYDSPD--YRRRYDSPDYYRHHKSYSRSRSP-YRRW 240
           S  +  R+   SP++RR   YS  R  SPD  Y RR D            RS SP YRR 
Sbjct: 211 SYGRRGRSSSYSPFYRRRRFYSPSRSPSPDDRYNRRRD------------RSYSPYYRRR 270

Query: 241 SRDRSYS-PCDHYSPDPYYRRHRYRSVSRSLSPKSRNSRHYSRSYSPEPRRRTLRNHYRS 300
            R RSYS  C      PYY R RYRS SRS SP+ R +R  S S     R R+   HY+ 
Sbjct: 271 DRSRSYSRNCRARDRSPYYMR-RYRSRSRSYSPRYR-ARDRSCSPYYRGRDRSYSPHYQG 330

Query: 301 PSQELSSYSRSISPERSRSGS-----SIYSSSISPERGR-SSRSRSCSHTPRRHESTRKR 360
             +  S  SR     RS SGS        S SISP +GR  SRS+S     RRH+     
Sbjct: 331 RDRSYSPESRYYRRHRSVSGSVSPGGRSMSRSISPRKGRKESRSKS-----RRHDR---- 382

Query: 361 GYSSRSRSRS-QSVTSRSVSP 367
             SS   SRS +S TSRSVSP
Sbjct: 391 -QSSMCHSRSARSSTSRSVSP 382

[Close]
BLAST of Cucsa.146830 vs. TAIR10
Match: AT4G35785.5 (AT4G35785.5 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 125.2 bits (313), Expect = 8.5e-29
Identity = 73/131 (55.73%), Postives = 83/131 (63.36%), Query Frame = 1 

Query: 2   SYSRRSRYSRSPSFKRSVSRSLSRSR---------------SRSRSPSSDVENPGNNLYV 61
           S SR    SRS S  R VS S SR R               SRSRS  S+VENPG  LYV
Sbjct: 31  SRSRPRLRSRSRSLPRPVSPSRSRGRILRGNLFFITCTLCRSRSRSRGSEVENPGTTLYV 90

Query: 62  TGLSPRITRRELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSNDEAENCIKYLNRS 118
           TGLS R+T ++LE HF+ EG V    LV +P TR SRGF F+TMSS  +AE CIKYLN+S
Sbjct: 91  TGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCIKYLNQS 150


HSP 2 Score: 119.0 bits (297), Expect = 6.1e-27
Identity = 74/156 (47.44%), Postives = 88/156 (56.41%), Query Frame = 1 

Query: 5   RRSRYSRSPSFKRSVSRSLSRSRSRSR----------------SPS-------------- 64
           +R R SRSPS ++  +RS SRSRSRSR                SPS              
Sbjct: 6   QRRRDSRSPSPRKERARSRSRSRSRSRSRPRLRSRSRSLPRPVSPSRSRGRILRGNLFFI 65

Query: 65  -------------SDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPLTRE 118
                        S+VENPG  LYVTGLS R+T ++LE HF+ EG V    LV +P TR 
Sbjct: 66  TCTLCRSRSRSRGSEVENPGTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRV 125

[Close]
BLAST of Cucsa.146830 vs. TAIR10
Match: AT5G64200.1 (AT5G64200.1 ortholog of human splicing factor SC35)

HSP 1 Score: 105.5 bits (262), Expect = 7.0e-23
Identity = 110/320 (34.38%), Postives = 142/320 (44.38%), Query Frame = 1 

Query: 43  NLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSNDEAENCIKY 102
           +L V  ++ R T  +L   F+  G V+DV +  D  T +SRGF F+     DEA   ++ 
Sbjct: 17  SLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVER 76

Query: 103 LNRSVLEGRIITVE---------------------KARRRRGRTPTPGRYLGLRTVHGRR 162
           L+  V++GR ITV+                     K+RR R R+P        R     R
Sbjct: 77  LDGRVVDGREITVQFAKYGPNAEKISKGRVVEPPPKSRRSRSRSP--------RRSRSPR 136

Query: 163 RSRSYSSRRSPSYSPYRRSSSRSTHCSSD-RSRSRSRSIDQHRRAYGSPY-HRRSYSYSR 222
           RSRS   RRSP  S   R  SR  +   D R RSRSRS D+  R       HRR    +R
Sbjct: 137 RSRSPPRRRSPRRSRSPRRRSRDDYREKDYRKRSRSRSYDRRERHEEKDRDHRRR---TR 196

Query: 223 RRYDSPDYRRRYDSPDYYRHHKSYSR--SRSPYRRWSRDRS---YSPCDHYSPDPYYRRH 282
            R  SPD +RR     Y    +S+SR  S SP RR  R  S    SP    SPD      
Sbjct: 197 SRSASPDEKRRVRG-RYDNESRSHSRSLSASPARRSPRSSSPQKTSPAREVSPDK----- 256

Query: 283 RYRSVSRSLSPKSRNSRHYSRSYSPEPRRRTLRNHYRSPSQELSSYSRSISPERSRSGSS 335
             RS  RS SP+        RS SP           RSP+ + +S S+ +SPER  +  S
Sbjct: 257 --RSNERSPSPR--------RSLSP-----------RSPALQKASPSKEMSPERRSNERS 298


HSP 2 Score: 61.6 bits (148), Expect = 1.2e-09
Identity = 62/185 (33.51%), Postives = 81/185 (43.78%), Query Frame = 1 

Query: 190 YHRRSYSYSRRRYDSPDYRRRYDSPDYYRHHKSYSRSRSPYRRWSRDRSYSP----CDHY 249
           Y   +   S+ R   P  + R       R  +S  RSRSP RR S  RS SP     D Y
Sbjct: 94  YGPNAEKISKGRVVEPPPKSRRSRSRSPRRSRSPRRSRSPPRRRSPRRSRSPRRRSRDDY 153

Query: 250 SPDPYYRRHRYRSVSRSLSPKSRNSRH----YSRSYSPEPRRRTLRNHYRSPSQELSSYS 309
               Y +R R RS  R    + ++  H     SRS SP+ +RR +R  Y + S+   S+S
Sbjct: 154 REKDYRKRSRSRSYDRRERHEEKDRDHRRRTRSRSASPDEKRR-VRGRYDNESR---SHS 213

Query: 310 RSIS---PERSRSGSSIYSSSISPERGRSSRSRSCSHTPRRHESTRKRGYSSRSRSRSQS 364
           RS+S     RS   SS   +S + E     RS   S +PRR  S R       S S+  S
Sbjct: 214 RSLSASPARRSPRSSSPQKTSPAREVSPDKRSNERSPSPRRSLSPRSPALQKASPSKEMS 273

[Close]
BLAST of Cucsa.146830 vs. TAIR10
Match: AT1G60650.1 (AT1G60650.1 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain)

HSP 1 Score: 79.3 bits (194), Expect = 5.4e-15
Identity = 80/267 (29.96%), Postives = 112/267 (41.95%), Query Frame = 1 

Query: 36  DVENPGN---NLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSS 95
           D EN GN    ++V GLS  +T R+LE  F   G + +  ++    T   RGFGFIT + 
Sbjct: 3   DRENDGNLESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTD 62

Query: 96  NDEAENCIKYLNRSVLEGRIITVEKARRRRGRTPTPGRYLGLRTVHGRRRSRSYSSRRSP 155
              A++ IK+++   L  ++I+V KA  +          +G   V   ++   YSSR   
Sbjct: 63  RRGADDAIKHMHGRELGNKVISVNKAEPK----------VGGEDVDQLKKGGGYSSRGKG 122

Query: 156 SYS---PYRRSSSRSTHCSS---DRS--------RSRSRSIDQHRRAYGSPYHRRS---- 215
           +       RR    +  C S   DR         RSR   ID HR  YG     R     
Sbjct: 123 TEDECFKCRRPGHWARDCPSTGDDRERFRVPLAMRSRIGDIDGHRDRYGDRDLERERERE 182

Query: 216 -----YSYSRRRYDSP--DYRRRYDSPDYY--RHHKSYSRSRSPYRRWSRDRSYSPCDHY 273
                Y   RR  D     YR R+DS D Y  R H  + R   P  R+  DR Y   +H+
Sbjct: 183 REFDRYMDGRRDRDGGRYSYRDRFDSGDKYEPRDHYPFERYAPPGDRFVSDR-YGMPEHH 242

[Close]
BLAST of Cucsa.146830 vs. TAIR10
Match: AT5G04280.1 (AT5G04280.1 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain)

HSP 1 Score: 70.5 bits (171), Expect = 2.5e-12
Identity = 86/316 (27.22%), Postives = 122/316 (38.61%), Query Frame = 1 

Query: 41  GNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSNDEAENCI 100
           G+ ++V GLSP +T R+LE+ FS  G +LD  ++ +  T  SRGFGFIT +     +  I
Sbjct: 6   GSRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESI 65

Query: 101 KYLNRSVLEGRIITVEKARRRRGRTPTPGRYLGLRTVHGRR--RSRSYSSRRSPSYSPYR 160
           + ++      R+I+V +A  + GR             HG R  R   YS     S+    
Sbjct: 66  REMHGRDFGDRVISVNRAEPKLGRDDGES--------HGSRGGRDSGYSIAGKGSFGGGG 125

Query: 161 RSS-----------SRSTHCSSD-RSRSRSR-----SIDQHRRAYGSP------YHRRSY 220
                          R  H + D  S    R            AYG        Y  R  
Sbjct: 126 GGGGRVGEDECFKCGRVGHWARDCPSAGGGRGGPVGGFSSRASAYGGSDGRVDRYADRDR 185

Query: 221 SYSRRRY--DSPDYRRRYDSPDYYRHHKSYSRSRSPYRRWSRDRSYSPCDHYSPDPYYRR 280
              R RY  D  D   RY + D +   ++Y     P  R++ DR  +P D ++    Y R
Sbjct: 186 YVDRERYIDDRYDGAARYGARDRFDSREAY----IPRDRYASDRYAAPADRFAGGDRYSR 245

Query: 281 --HRY--------RSVSRSLSPKSRNSRHYSRSYSPEPRRRTLRNHYRSPSQELSSYSRS 320
              RY        RS  R ++P S  S  Y    +  P R          S+  + Y R 
Sbjct: 246 GSDRYPPGSYDKARSFERDIAP-SAGSDRYGGGRAGGPIRGGGEEGRGFRSRAGAPYER- 305

[Close]
BLAST of Cucsa.146830 vs. NCBI nr
Match: gi|449455042|ref|XP_004145262.1| (PREDICTED: serine/arginine-rich splicing factor SR45a-like [Cucumis sativus])

HSP 1 Score: 741.5 bits (1913), Expect = 7.1e-211
Identity = 367/367 (100.00%), Postives = 367/367 (100.00%), Query Frame = 1 

Query: 1   MSYSRRSRYSRSPSFKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK 60
           MSYSRRSRYSRSPSFKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK
Sbjct: 1   MSYSRRSRYSRSPSFKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK 60

Query: 61  HFSAEGTVLDVHLVADPLTRESRGFGFITMSSNDEAENCIKYLNRSVLEGRIITVEKARR 120
           HFSAEGTVLDVHLVADPLTRESRGFGFITMSSNDEAENCIKYLNRSVLEGRIITVEKARR
Sbjct: 61  HFSAEGTVLDVHLVADPLTRESRGFGFITMSSNDEAENCIKYLNRSVLEGRIITVEKARR 120

Query: 121 RRGRTPTPGRYLGLRTVHGRRRSRSYSSRRSPSYSPYRRSSSRSTHCSSDRSRSRSRSID 180
           RRGRTPTPGRYLGLRTVHGRRRSRSYSSRRSPSYSPYRRSSSRSTHCSSDRSRSRSRSID
Sbjct: 121 RRGRTPTPGRYLGLRTVHGRRRSRSYSSRRSPSYSPYRRSSSRSTHCSSDRSRSRSRSID 180

Query: 181 QHRRAYGSPYHRRSYSYSRRRYDSPDYRRRYDSPDYYRHHKSYSRSRSPYRRWSRDRSYS 240
           QHRRAYGSPYHRRSYSYSRRRYDSPDYRRRYDSPDYYRHHKSYSRSRSPYRRWSRDRSYS
Sbjct: 181 QHRRAYGSPYHRRSYSYSRRRYDSPDYRRRYDSPDYYRHHKSYSRSRSPYRRWSRDRSYS 240

Query: 241 PCDHYSPDPYYRRHRYRSVSRSLSPKSRNSRHYSRSYSPEPRRRTLRNHYRSPSQELSSY 300
           PCDHYSPDPYYRRHRYRSVSRSLSPKSRNSRHYSRSYSPEPRRRTLRNHYRSPSQELSSY
Sbjct: 241 PCDHYSPDPYYRRHRYRSVSRSLSPKSRNSRHYSRSYSPEPRRRTLRNHYRSPSQELSSY 300

Query: 301 SRSISPERSRSGSSIYSSSISPERGRSSRSRSCSHTPRRHESTRKRGYSSRSRSRSQSVT 360
           SRSISPERSRSGSSIYSSSISPERGRSSRSRSCSHTPRRHESTRKRGYSSRSRSRSQSVT
Sbjct: 301 SRSISPERSRSGSSIYSSSISPERGRSSRSRSCSHTPRRHESTRKRGYSSRSRSRSQSVT 360

Query: 361 SRSVSPA 368
           SRSVSPA
Sbjct: 361 SRSVSPA 367

[Close]
BLAST of Cucsa.146830 vs. NCBI nr
Match: gi|659115137|ref|XP_008457405.1| (PREDICTED: serine/arginine-rich splicing factor 2-like [Cucumis melo])

HSP 1 Score: 687.6 bits (1773), Expect = 1.2e-194
Identity = 347/369 (94.04%), Postives = 356/369 (96.48%), Query Frame = 1 

Query: 1   MSYSRRSRYSRSPSFKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK 60
           MSYSRRSRYSRSPSFKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK
Sbjct: 1   MSYSRRSRYSRSPSFKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK 60

Query: 61  HFSAEGTVLDVHLVADPLTRESRGFGFITMSSNDEAENCIKYLNRSVLEGRIITVEKARR 120
           HFSAEGTVLDVHL+ADPLTRESRGFGFITMSSNDEAENCIKYLNRSVLEGRIITVEKARR
Sbjct: 61  HFSAEGTVLDVHLLADPLTRESRGFGFITMSSNDEAENCIKYLNRSVLEGRIITVEKARR 120

Query: 121 RRGRTPTPGRYLGLRTVHGRRRSRSYSSRRSPSYSPYRRSSSRSTHCSSDRSRSRSRSID 180
           RRGRTPTPGRYLGLRTVH RRRSRSYSSRRSPSYSPYRRSSSRSTH SSDRSRSRSRSI+
Sbjct: 121 RRGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPYRRSSSRSTHYSSDRSRSRSRSIN 180

Query: 181 QHRRAYGSPYHRRSYSYSRRRYDSPDYRRRYDSPDYYRHHKSYSRSRSPYRRWSRDRSYS 240
           +HRR+YGSPYHRRSYSYSRRRYDSP YRRRYDSPDYYRHH+SYSRS SPYRRWSRDRSYS
Sbjct: 181 RHRRSYGSPYHRRSYSYSRRRYDSPYYRRRYDSPDYYRHHRSYSRSSSPYRRWSRDRSYS 240

Query: 241 PCDHYSPDPYYRRHRYRSVSRSLSPKSRNSRHYSRSYSPEPRRRTLRNHYRSPSQE-LSS 300
           P D+YSPDPYYRRHRYRSVSRSLSPKSRN RHYSRSYSPEPRRRTLRN+  SPS+E   S
Sbjct: 241 PYDYYSPDPYYRRHRYRSVSRSLSPKSRNGRHYSRSYSPEPRRRTLRNYSHSPSRESRRS 300

Query: 301 YSRSISPERS-RSGSSIYSSSISPERGRSSRSRSCSHTPRRHESTRKRGYSSRSRSRSQS 360
           YSRSISPERS RSGSS+YSSSISPERGRS RSRSCSHTPRRHESTRKRGYSSRSRSRSQS
Sbjct: 301 YSRSISPERSRRSGSSVYSSSISPERGRSLRSRSCSHTPRRHESTRKRGYSSRSRSRSQS 360

Query: 361 VTSRSVSPA 368
           VTSRSVSPA
Sbjct: 361 VTSRSVSPA 369

[Close]
BLAST of Cucsa.146830 vs. NCBI nr
Match: gi|255558828|ref|XP_002520437.1| (PREDICTED: serine/arginine-rich splicing factor SR45a isoform X2 [Ricinus communis])

HSP 1 Score: 398.3 bits (1022), Expect = 1.5e-107
Identity = 241/397 (60.71%), Postives = 273/397 (68.77%), Query Frame = 1 

Query: 1   MSYSRRSRYSRSPS----FKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRR 60
           MSYS+RSRYS SPS    + RSVSRS+SRSRSRSRSPSSDVENPGNNLYVTGLSPRIT+R
Sbjct: 2   MSYSKRSRYSPSPSPYRRYSRSVSRSMSRSRSRSRSPSSDVENPGNNLYVTGLSPRITKR 61

Query: 61  ELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSNDEAENCIKYLNRSVLEGRIITVE 120
           +LEKHF++EG V+DVHLV DP TRESRGFGF+TMS+  EA+ CIKYLNRSVLEGR+ITVE
Sbjct: 62  DLEKHFASEGKVIDVHLVVDPWTRESRGFGFVTMSTLVEADRCIKYLNRSVLEGRVITVE 121

Query: 121 KARRRRGRTPTPGRYLGLRTVHGRRRSRSYSSRRSPSYSPYRRSSSRSTHCSSDRSRSRS 180
           KA+RRRGRTPTPGRYLGLRT+  RR + S+S  RSPSYS YR S SRS   SS+RSRSRS
Sbjct: 122 KAKRRRGRTPTPGRYLGLRTIRVRRLTPSHSPHRSPSYSRYRGSLSRSPRYSSERSRSRS 181

Query: 181 RSIDQHRRA--------YGSPYHRRSYS--YSRRRYDSPDYR-RRYDSPDYYRHHKSYSR 240
            S    RR+        YG     RSYS  Y RRR  SP YR RR  SP YY  H+SYSR
Sbjct: 182 YSPHYRRRSRSRSFSPSYGRRSRSRSYSPYYRRRRSYSPYYRSRRSYSPYYYSRHRSYSR 241

Query: 241 SRSPYRR---WSRDRSYSPCDHYSPDP---YYRRHRYRSVSRSLSPKSRNS-RHYSRSYS 300
           SRSPY R      DRSYSP       P   YYRRHR+RSVS S   ++R S R YSRS S
Sbjct: 242 SRSPYSRSPVSRHDRSYSPYGSRYDSPGERYYRRHRHRSVSSSPGRRTRRSARSYSRSIS 301

Query: 301 PEPRRRTLRNHYRS----PSQELSSYSRSISPERSRSGSSIYSSSISPER---GRSSRSR 360
           P PRR + R++  S    P     SYSRS SP   +S    YS SISP R    R SRSR
Sbjct: 302 PSPRRSSRRSYSSSRSPPPRSSRKSYSRSPSPRMRKSLKRSYSRSISPIRRKSSRRSRSR 361

Query: 361 SCSHTPRRHES-TRKRGYSSRSRSRSQSVTSRSVSPA 368
           S S      ++ +R R  S+ SRS S+S T RS SP+
Sbjct: 362 SASSVHDSQDTYSRSRNLSASSRSVSRSPTPRSASPS 398

[Close]
BLAST of Cucsa.146830 vs. NCBI nr
Match: gi|1000963365|ref|XP_015575505.1| (PREDICTED: serine/arginine-rich splicing factor SR45a isoform X1 [Ricinus communis])

HSP 1 Score: 396.7 bits (1018), Expect = 4.3e-107
Identity = 242/399 (60.65%), Postives = 274/399 (68.67%), Query Frame = 1 

Query: 1   MSYSRRSRYSRSPS----FKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRR 60
           MSYS+RSRYS SPS    + RSVSRS+SRSRSRSRSPSSDVENPGNNLYVTGLSPRIT+R
Sbjct: 2   MSYSKRSRYSPSPSPYRRYSRSVSRSMSRSRSRSRSPSSDVENPGNNLYVTGLSPRITKR 61

Query: 61  ELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSNDEAENCIKYLNRSVLEGRIITVE 120
           +LEKHF++EG V+DVHLV DP TRESRGFGF+TMS+  EA+ CIKYLNRSVLEGR+ITVE
Sbjct: 62  DLEKHFASEGKVIDVHLVVDPWTRESRGFGFVTMSTLVEADRCIKYLNRSVLEGRVITVE 121

Query: 121 KARRRRGRTPTPGRYLGLRTVHG--RRRSRSYSSRRSPSYSPYRRSSSRSTHCSSDRSRS 180
           KA+RRRGRTPTPGRYLGLRT+ G  RR + S+S  RSPSYS YR S SRS   SS+RSRS
Sbjct: 122 KAKRRRGRTPTPGRYLGLRTIRGKLRRLTPSHSPHRSPSYSRYRGSLSRSPRYSSERSRS 181

Query: 181 RSRSIDQHRRA--------YGSPYHRRSYS--YSRRRYDSPDYR-RRYDSPDYYRHHKSY 240
           RS S    RR+        YG     RSYS  Y RRR  SP YR RR  SP YY  H+SY
Sbjct: 182 RSYSPHYRRRSRSRSFSPSYGRRSRSRSYSPYYRRRRSYSPYYRSRRSYSPYYYSRHRSY 241

Query: 241 SRSRSPYRR---WSRDRSYSPCDHYSPDP---YYRRHRYRSVSRSLSPKSRNS-RHYSRS 300
           SRSRSPY R      DRSYSP       P   YYRRHR+RSVS S   ++R S R YSRS
Sbjct: 242 SRSRSPYSRSPVSRHDRSYSPYGSRYDSPGERYYRRHRHRSVSSSPGRRTRRSARSYSRS 301

Query: 301 YSPEPRRRTLRNHYRS----PSQELSSYSRSISPERSRSGSSIYSSSISPER---GRSSR 360
            SP PRR + R++  S    P     SYSRS SP   +S    YS SISP R    R SR
Sbjct: 302 ISPSPRRSSRRSYSSSRSPPPRSSRKSYSRSPSPRMRKSLKRSYSRSISPIRRKSSRRSR 361

Query: 361 SRSCSHTPRRHES-TRKRGYSSRSRSRSQSVTSRSVSPA 368
           SRS S      ++ +R R  S+ SRS S+S T RS SP+
Sbjct: 362 SRSASSVHDSQDTYSRSRNLSASSRSVSRSPTPRSASPS 400

[Close]
BLAST of Cucsa.146830 vs. NCBI nr
Match: gi|947097858|gb|KRH46443.1| (hypothetical protein GLYMA_08G334100 [Glycine max])

HSP 1 Score: 385.2 bits (988), Expect = 1.3e-103
Identity = 237/385 (61.56%), Postives = 264/385 (68.57%), Query Frame = 1 

Query: 1   MSYSRRSRYSRSPS----FKRSVSRSLSR--SRSRSRSPSSDVENPGNNLYVTGLSPRIT 60
           MSYSRRSRYSRSPS    + RSVSRSLSR  SRSRSRS S D ENPGNNLYVTGLSPRIT
Sbjct: 15  MSYSRRSRYSRSPSPYKRYSRSVSRSLSRTSSRSRSRSLSRDAENPGNNLYVTGLSPRIT 74

Query: 61  RRELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSNDEAENCIKYLNRSVLEGRIIT 120
           +RELEKHFSAEG V+DVHLV DP TRESRGFGF+TM + +EA+ C+KYLNRSVLEGR+IT
Sbjct: 75  KRELEKHFSAEGKVIDVHLVVDPWTRESRGFGFVTMETLEEADRCVKYLNRSVLEGRVIT 134

Query: 121 VEKARRRRGRTPTPGRYLGLRTVHGRRRSRSYSSRRSPSYSPYRRSSSRSTHCSSDRSRS 180
           VEKA+RRRGRTPTPG+YLGLRT+  +RRS S S RRSPSYSPYRRS SRS + SSDRSRS
Sbjct: 135 VEKAKRRRGRTPTPGKYLGLRTIRAQRRSPSDSPRRSPSYSPYRRSYSRSPY-SSDRSRS 194

Query: 181 RSRSIDQHRRAYGSPYHRRSYSYSRRRYDSPDYRRRYDSPDYYRHHKSYSRSRSPYRRWS 240
           RS S D  RR    PYH R  SYS        Y  RY S   Y  H+SYSRS SPY R  
Sbjct: 195 RSYSPDYRRRKSNYPYHSRRRSYS-------PYYSRYRSYSRYDRHRSYSRSCSPYSRSP 254

Query: 241 ---RDRSYSPCD--HYSPDPY-YRRHRYRSVSRSLSPKSRNSR--HY---SRSYSPEPRR 300
              RDRSYSP D  + SPD + YRRH YRSVSR  SP  R  R  HY   SRS SP PRR
Sbjct: 255 VSIRDRSYSPYDSRYDSPDDHSYRRHHYRSVSRGASPDDRYYRRHHYRSVSRSASPRPRR 314

Query: 301 RTLRNHYRSPSQELSSYSRSISPERSRSGSSIYSSSISPERGRSSRSRSCSHTPRRHES- 360
           R+ R           SYSRS +P   RS     S S+SP R R S SRS   + +  +  
Sbjct: 315 RSRR-----------SYSRSATPVSKRSN----SRSVSP-RSRKSHSRSSKRSGKYEKHY 374

Query: 361 TRKRGYSSRSRSRSQSVTSRSVSPA 368
           +R    S+ SRS S+S T RS SP+
Sbjct: 375 SRSPSVSASSRSVSRSNTPRSTSPS 375

The following BLAST results are available for this feature:
BLAST of Cucsa.146830 vs. Swiss-Prot
Match NameE-valueIdentityDescription
SR45A_ARATH3.9e-7653.54Serine/arginine-rich splicing factor SR45a OS=Arabidopsis thaliana GN=SR45A PE=1... [more]
YDC1_SCHPO1.1e-2232.60Uncharacterized RNA-binding protein C25G10.01 OS=Schizosaccharomyces pombe (stra... [more]
SC35_ARATH1.2e-2134.38Serine/arginine-rich splicing factor SC35 OS=Arabidopsis thaliana GN=SC35 PE=1 S... [more]
SRSF2_PIG1.7e-1838.21Serine/arginine-rich splicing factor 2 OS=Sus scrofa GN=SRSF2 PE=2 SV=1[more]
SRSF2_HUMAN2.2e-1838.21Serine/arginine-rich splicing factor 2 OS=Homo sapiens GN=SRSF2 PE=1 SV=4[more]
BLAST of Cucsa.146830 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LXJ6_CUCSA5.0e-211100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G528490 PE=4 SV=1[more]
B9S368_RICCO1.0e-10760.71FUS-interacting serine-arginine-rich protein 1, putative OS=Ricinus communis GN=... [more]
A0A0R0IW62_SOYBN9.0e-10461.56Uncharacterized protein OS=Glycine max GN=GLYMA_08G334100 PE=4 SV=1[more]
A0A0B2NXN8_GLYSO9.0e-10461.56Putative RNA-binding protein C25G10.01 OS=Glycine soja GN=glysoja_028457 PE=4 SV... [more]
A0A0R0J3B8_SOYBN9.0e-10461.56Uncharacterized protein OS=Glycine max GN=GLYMA_08G334100 PE=4 SV=1[more]
BLAST of Cucsa.146830 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G07350.12.2e-7753.54 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT4G35785.58.5e-2955.73 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT5G64200.17.0e-2334.38 ortholog of human splicing factor SC35[more]
AT1G60650.15.4e-1529.96 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc... [more]
AT5G04280.12.5e-1227.22 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc... [more]
BLAST of Cucsa.146830 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449455042|ref|XP_004145262.1|7.1e-211100.00PREDICTED: serine/arginine-rich splicing factor SR45a-like [Cucumis sativus][more]
gi|659115137|ref|XP_008457405.1|1.2e-19494.04PREDICTED: serine/arginine-rich splicing factor 2-like [Cucumis melo][more]
gi|255558828|ref|XP_002520437.1|1.5e-10760.71PREDICTED: serine/arginine-rich splicing factor SR45a isoform X2 [Ricinus commun... [more]
gi|1000963365|ref|XP_015575505.1|4.3e-10760.65PREDICTED: serine/arginine-rich splicing factor SR45a isoform X1 [Ricinus commun... [more]
gi|947097858|gb|KRH46443.1|1.3e-10361.56hypothetical protein GLYMA_08G334100 [Glycine max][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0000166nucleotide binding
GO:0003676nucleic acid binding
GO:0000166nucleotide binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0043484 regulation of RNA splicing
biological_process GO:0009644 response to high light intensity
biological_process GO:0008150 biological_process
cellular_component GO:0030529 intracellular ribonucleoprotein complex
cellular_component GO:0019013 viral nucleocapsid
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000166 nucleotide binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.146830.2Cucsa.146830.2mRNA
Cucsa.146830.1Cucsa.146830.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 44..113
score: 1.6
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 43..116
score: 2.0
IPR000504RNA recognition motif domainPROFILEPS50102RRMcoord: 42..120
score: 17
IPR012677Nucleotide-binding alpha-beta plait domainGENE3DG3DSA:3.30.70.330coord: 26..133
score: 1.2
IPR012677Nucleotide-binding alpha-beta plait domainunknownSSF54928RNA-binding domain, RBDcoord: 30..149
score: 1.16
NoneNo IPR availablePANTHERPTHR15241TRANSFORMER-2-RELATEDcoord: 348..356
score: 1.3E-74coord: 1..165
score: 1.3E-74coord: 195..254
score: 1.3
NoneNo IPR availablePANTHERPTHR15241:SF4TRANSFORMER-SR RIBONUCLEOPROTEIN-RELATEDcoord: 348..356
score: 1.3E-74coord: 1..165
score: 1.3E-74coord: 195..254
score: 1.3

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.146830Cla008188Watermelon (97103) v1cgywmB255
Cucsa.146830Csa1G528490Cucumber (Chinese Long) v2cgycuB210
Cucsa.146830MELO3C020575Melon (DHL92) v3.5.1cgymeB243
Cucsa.146830ClCG03G000990Watermelon (Charleston Gray)cgywcgB246
Cucsa.146830CSPI01G23640Wild cucumber (PI 183967)cgycpiB214
Cucsa.146830CmaCh13G000840Cucurbita maxima (Rimu)cgycmaB0402
Cucsa.146830CmaCh01G006460Cucurbita maxima (Rimu)cgycmaB0403
Cucsa.146830CmoCh13G000800Cucurbita moschata (Rifu)cgycmoB0402
Cucsa.146830CmoCh01G006780Cucurbita moschata (Rifu)cgycmoB0403
Cucsa.146830Lsi02G013080Bottle gourd (USVL1VR-Ls)cgylsiB233
Cucsa.146830Cp4.1LG02g11480Cucurbita pepo (Zucchini)cgycpeB0391
Cucsa.146830MELO3C020575.2Melon (DHL92) v3.6.1cgymedB240
Cucsa.146830CsaV3_1G035950Cucumber (Chinese Long) v3cgycucB219
Cucsa.146830Cla97C03G051790Watermelon (97103) v2cgywmbB246
Cucsa.146830Bhi08G000445Wax gourdcgywgoB286
Cucsa.146830Carg12412Silver-seed gourdcarcgyB0509
Cucsa.146830Carg20619Silver-seed gourdcarcgyB0445
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.146830Wax gourdcgywgoB284
Cucsa.146830Cucumber (Gy14) v1cgycgyB083
Cucsa.146830Cucumber (Gy14) v1cgycgyB092
Cucsa.146830Cucurbita maxima (Rimu)cgycmaB0404
Cucsa.146830Cucumber (Chinese Long) v2cgycuB211
Cucsa.146830Wild cucumber (PI 183967)cgycpiB215
Cucsa.146830Wild cucumber (PI 183967)cgycpiB216
Cucsa.146830Cucumber (Chinese Long) v2cgycuB212
Cucsa.146830Melon (DHL92) v3.5.1cgymeB244
Cucsa.146830Melon (DHL92) v3.5.1cgymeB245
Cucsa.146830Watermelon (Charleston Gray)cgywcgB245
Cucsa.146830Watermelon (97103) v1cgywmB254
Cucsa.146830Watermelon (97103) v1cgywmB256
Cucsa.146830Cucurbita pepo (Zucchini)cgycpeB0389
Cucsa.146830Cucurbita pepo (Zucchini)cgycpeB0390
Cucsa.146830Bottle gourd (USVL1VR-Ls)cgylsiB234
Cucsa.146830Melon (DHL92) v3.6.1cgymedB241
Cucsa.146830Melon (DHL92) v3.6.1cgymedB242
Cucsa.146830Silver-seed gourdcarcgyB0192
Cucsa.146830Cucumber (Chinese Long) v3cgycucB220
Cucsa.146830Cucumber (Chinese Long) v3cgycucB221
Cucsa.146830Watermelon (97103) v2cgywmbB245