Cla97C03G051790 (gene) Watermelon (97103) v2

Overview
NameCla97C03G051790
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
Descriptionserine/arginine-rich splicing factor SR45a-like
LocationCla97Chr03 : 948639 .. 950473 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCATACTCCCGAAGGTCTAGGTATTCCCGCTCCCCATCATACAAACGATCAGTCTCAAGGTCCCTGTCAAGGTCAAGGAGCCGTTCGAGGTAACTTCTTGCTGAGGAAGCATGTGCTTGTTTGGTTTTCCCACTTCTCTAAATCATACGTACATATGCCTTTATTCTTATTTTGCGGATTCTCAATTTGTTTTTCAGGAGCCCTTCAAGTGACGTTGAAAATCCTGGGAACAACTTGTATGTCACTGGTTTGTCACCTAGAATAACAAGAAGAGAACTTGAGAAGCATTTTTCTGCTGAGGGAACAGTACGTTCCTGTTCTCTTATTTTCTTTAAACTTCTTATTTTCTTGGCTTGTATTCTTAGTGGCCGTGTTTGTATTTTGTCTTCTGTGTTGGTGATTTAAATTATGCACTATTTTCAATTCATGTATGAATTTTTCTATATTTCAGGTGCTAGATGTTCATCTTGTGGCCGATCCATTGACTAGAGAATCTCGTGGATTTGGATTCATTACCATGTCTAGTATTGATGAGGCAGAAAATTGCATCAAATATCTGAATCGATCTGTACTTGAAGGTCGTATAATTACTGTGGAAAAGGTAAAAGTTTCACCAAGTATTTTTTTCAAAGACTTGGGATGTTTCCCATTATTACTCATCTTGTTCTTTAACCTCAAATATTTACGGGATCTCTGGATGGTTTGTTGTTAGAGATTTGAGTATTTTTGCTTCTTTGCACTTGAAGTTTTTTTGGCAGCAGGTTAGCTGTATGTAGCAGCTCTTCATCAAACTCAAACTACAACTTAACAAACAAAACAAACACATGAAGTCTCAGAACACTGGGGTTGTATGCCCTGCATTTCTCTCTATTTCTGCCAATTGGATTATATGTTATTTAAGTATTTTAGCTTTTTTCTTTTTCCTTCTAATTTTGACTCTAGACACCATCACTTGCACCCCTGCTGGTACTTCTCTTAGATGGACGATTGTGAGTCGTCGTCTCATTTTTCTATCTTTAATTGTTTGATAGGCTCGAAGGCGGAGAGGTAGAACTCCAACTCCTGGGAGGTATCTTGGACTTAGAACAGTTCATGGTGAGGTTTTAATCTTATGTTTGGCTTATTGCTGTGAAGTATCTTGATATCTCTGTCTAATCTTCATCATTCTAACAGTGAGGCGTAGGTCGCGTAGCTACTCTTCTCGGCGTTCTCCCAGCTACTCTCCATATAGGAGAAGCTTTAGCCGCTCTACTCATTATTCATCTGACCGTAGCAGGAGTAGGTCCCATTCCCTTGACCGACGCCGTAGATCATACGGTTCCCCTTATCAGTATAGATCGTACTCTTATAGTCGACGTAGATATGATTCTCCAGACTACAGGCATTATAAGTCATATTCTCGATCCCGCTCACCGTATCATAGGTGTGGTCGTGATAAGTCATACTCACCTTATGACAGTTATTCCCCTTATCCTTACTATAGAAGGCACAGTTATCGGTCAGTTTCTCGGAGCCTGTCACCAGAGGCAAGGATTTCTCATAGACATTATTCCAGGAGTTATTCTCCTGGGCCTAGGAGAAGAACATTGAGGAGTTACTCTCGCAGCCCCTCCCTGGAATCGAGGAGAAGTTATTCACGTAGTATTTCCCCTAAACGAAGCAGGAGATCATGGAGCAGCTATTCATACAGCATTTCTCCTGAAAGAAGCAGGAGCTCAAGGAGTCGCTCTCCCAGCAATACCCCGAGACAGCATAGCTACAAGAGAGGGTATTCTGGTAGGAGTCGATCGAGAAGTGGAAGTGTGAGTTCAAGGTCCGTTAGCGCTGCTTGA

mRNA sequence

ATGTCATACTCCCGAAGGTCTAGGTATTCCCGCTCCCCATCATACAAACGATCAGTCTCAAGGTCCCTGTCAAGGTCAAGGAGCCGTTCGAGGAGCCCTTCAAGTGACGTTGAAAATCCTGGGAACAACTTGTATGTCACTGGTTTGTCACCTAGAATAACAAGAAGAGAACTTGAGAAGCATTTTTCTGCTGAGGGAACAGTGCTAGATGTTCATCTTGTGGCCGATCCATTGACTAGAGAATCTCGTGGATTTGGATTCATTACCATGTCTAGTATTGATGAGGCAGAAAATTGCATCAAATATCTGAATCGATCTGTACTTGAAGGTCGTATAATTACTGTGGAAAAGGCTCGAAGGCGGAGAGGTAGAACTCCAACTCCTGGGAGGTATCTTGGACTTAGAACAGTTCATGTGAGGCGTAGGTCGCGTAGCTACTCTTCTCGGCGTTCTCCCAGCTACTCTCCATATAGGAGAAGCTTTAGCCGCTCTACTCATTATTCATCTGACCGTAGCAGGAGTAGGTCCCATTCCCTTGACCGACGCCGTAGATCATACGGTTCCCCTTATCAGTATAGATCGTACTCTTATAGTCGACGTAGATATGATTCTCCAGACTACAGGCATTATAAGTCATATTCTCGATCCCGCTCACCGTATCATAGGTGTGGTCGTGATAAGTCATACTCACCTTATGACAGTTATTCCCCTTATCCTTACTATAGAAGGCACAGTTATCGGTCAGTTTCTCGGAGCCTGTCACCAGAGGCAAGGATTTCTCATAGACATTATTCCAGGAGTTATTCTCCTGGGCCTAGGAGAAGAACATTGAGGAGTTACTCTCGCAGCCCCTCCCTGGAATCGAGGAGAAGTTATTCACGTAGTATTTCCCCTAAACGAAGCAGGAGATCATGGAGCAGCTATTCATACAGCATTTCTCCTGAAAGAAGCAGGAGCTCAAGGAGTCGCTCTCCCAGCAATACCCCGAGACAGCATAGCTACAAGAGAGGGTATTCTGGTAGGAGTCGATCGAGAAGTGGAAGTGTGAGTTCAAGGTCCGTTAGCGCTGCTTGA

Coding sequence (CDS)

ATGTCATACTCCCGAAGGTCTAGGTATTCCCGCTCCCCATCATACAAACGATCAGTCTCAAGGTCCCTGTCAAGGTCAAGGAGCCGTTCGAGGAGCCCTTCAAGTGACGTTGAAAATCCTGGGAACAACTTGTATGTCACTGGTTTGTCACCTAGAATAACAAGAAGAGAACTTGAGAAGCATTTTTCTGCTGAGGGAACAGTGCTAGATGTTCATCTTGTGGCCGATCCATTGACTAGAGAATCTCGTGGATTTGGATTCATTACCATGTCTAGTATTGATGAGGCAGAAAATTGCATCAAATATCTGAATCGATCTGTACTTGAAGGTCGTATAATTACTGTGGAAAAGGCTCGAAGGCGGAGAGGTAGAACTCCAACTCCTGGGAGGTATCTTGGACTTAGAACAGTTCATGTGAGGCGTAGGTCGCGTAGCTACTCTTCTCGGCGTTCTCCCAGCTACTCTCCATATAGGAGAAGCTTTAGCCGCTCTACTCATTATTCATCTGACCGTAGCAGGAGTAGGTCCCATTCCCTTGACCGACGCCGTAGATCATACGGTTCCCCTTATCAGTATAGATCGTACTCTTATAGTCGACGTAGATATGATTCTCCAGACTACAGGCATTATAAGTCATATTCTCGATCCCGCTCACCGTATCATAGGTGTGGTCGTGATAAGTCATACTCACCTTATGACAGTTATTCCCCTTATCCTTACTATAGAAGGCACAGTTATCGGTCAGTTTCTCGGAGCCTGTCACCAGAGGCAAGGATTTCTCATAGACATTATTCCAGGAGTTATTCTCCTGGGCCTAGGAGAAGAACATTGAGGAGTTACTCTCGCAGCCCCTCCCTGGAATCGAGGAGAAGTTATTCACGTAGTATTTCCCCTAAACGAAGCAGGAGATCATGGAGCAGCTATTCATACAGCATTTCTCCTGAAAGAAGCAGGAGCTCAAGGAGTCGCTCTCCCAGCAATACCCCGAGACAGCATAGCTACAAGAGAGGGTATTCTGGTAGGAGTCGATCGAGAAGTGGAAGTGTGAGTTCAAGGTCCGTTAGCGCTGCTTGA

Protein sequence

MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSIDEAENCIKYLNRSVLEGRIITVEKARRRRGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPYRRSFSRSTHYSSDRSRSRSHSLDRRRRSYGSPYQYRSYSYSRRRYDSPDYRHYKSYSRSRSPYHRCGRDKSYSPYDSYSPYPYYRRHSYRSVSRSLSPEARISHRHYSRSYSPGPRRRTLRSYSRSPSLESRRSYSRSISPKRSRRSWSSYSYSISPERSRSSRSRSPSNTPRQHSYKRGYSGRSRSRSGSVSSRSVSAA
Homology
[Close]
BLAST of Cla97C03G051790 vs. NCBI nr
Match: XP_022948992.1 (serine/arginine-rich splicing factor SR45a-like isoform X4 [Cucurbita moschata])

HSP 1 Score: 238.0 bits (606), Expect = 4.8e-59
Identity = 152/166 (91.57%), Postives = 155/166 (93.37%), Query Frame = 0 

Query: 1   MSYSRRSRYSRXXXXXXXXXXXXXXXXXXXXXXXXDVENPGNNLYVTGLSPRITRRELEK 60
           MSYSRRSRYSRXXXXXXXXXXXXXXXXXXXXXXXXDVENPGNNLYVTGLS RITRRELEK
Sbjct: 1   MSYSRRSRYSRXXXXXXXXXXXXXXXXXXXXXXXXDVENPGNNLYVTGLSHRITRRELEK 60

Query: 61  HFSAEGTVLDVHLVADPLTRESRGFGFITMSSIDEAENCIKYLNRSVLEGRIITVEKARR 120
           HFSAEGTVLDVHLV DP TRESRGFGFITMSS DEAE CIKYLNRSVLEGR+ITVEKARR
Sbjct: 61  HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRLITVEKARR 120

Query: 121 RRGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPYRRSFSRSTH 167
           RRGRTPTPGRY GLRTV VRRR RSYSSRRSPSYSPY RS S S++
Sbjct: 121 RRGRTPTPGRYFGLRTVCVRRRLRSYSSRRSPSYSPYSRSLSCSSN 166

[Close]
BLAST of Cla97C03G051790 vs. NCBI nr
Match: XP_022948994.1 (serine/arginine-rich splicing factor SR45a-like isoform X5 [Cucurbita moschata])

HSP 1 Score: 237.7 bits (605), Expect = 6.3e-59
Identity = 152/165 (92.12%), Postives = 154/165 (93.33%), Query Frame = 0 

Query: 1   MSYSRRSRYSRXXXXXXXXXXXXXXXXXXXXXXXXDVENPGNNLYVTGLSPRITRRELEK 60
           MSYSRRSRYSRXXXXXXXXXXXXXXXXXXXXXXXXDVENPGNNLYVTGLS RITRRELEK
Sbjct: 1   MSYSRRSRYSRXXXXXXXXXXXXXXXXXXXXXXXXDVENPGNNLYVTGLSHRITRRELEK 60

Query: 61  HFSAEGTVLDVHLVADPLTRESRGFGFITMSSIDEAENCIKYLNRSVLEGRIITVEKARR 120
           HFSAEGTVLDVHLV DP TRESRGFGFITMSS DEAE CIKYLNRSVLEGR+ITVEKARR
Sbjct: 61  HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRLITVEKARR 120

Query: 121 RRGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPYRRSFSRST 166
           RRGRTPTPGRY GLRTV VRRR RSYSSRRSPSYSPY RS S S+
Sbjct: 121 RRGRTPTPGRYFGLRTVCVRRRLRSYSSRRSPSYSPYSRSLSCSS 165

[Close]
BLAST of Cla97C03G051790 vs. NCBI nr
Match: XP_022948991.1 (serine/arginine-rich splicing factor SR45a-like isoform X3 [Cucurbita moschata])

HSP 1 Score: 237.3 bits (604), Expect = 8.2e-59
Identity = 152/164 (92.68%), Postives = 153/164 (93.29%), Query Frame = 0 

Query: 1   MSYSRRSRYSRXXXXXXXXXXXXXXXXXXXXXXXXDVENPGNNLYVTGLSPRITRRELEK 60
           MSYSRRSRYSRXXXXXXXXXXXXXXXXXXXXXXXXDVENPGNNLYVTGLS RITRRELEK
Sbjct: 1   MSYSRRSRYSRXXXXXXXXXXXXXXXXXXXXXXXXDVENPGNNLYVTGLSHRITRRELEK 60

Query: 61  HFSAEGTVLDVHLVADPLTRESRGFGFITMSSIDEAENCIKYLNRSVLEGRIITVEKARR 120
           HFSAEGTVLDVHLV DP TRESRGFGFITMSS DEAE CIKYLNRSVLEGR+ITVEKARR
Sbjct: 61  HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRLITVEKARR 120

Query: 121 RRGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPYRRSFSRS 165
           RRGRTPTPGRY GLRTV VRRR RSYSSRRSPSYSPY RS S S
Sbjct: 121 RRGRTPTPGRYFGLRTVCVRRRLRSYSSRRSPSYSPYSRSLSCS 164

[Close]
BLAST of Cla97C03G051790 vs. NCBI nr
Match: XP_022948988.1 (serine/arginine-rich splicing factor SR45a-like isoform X1 [Cucurbita moschata] >XP_022948989.1 serine/arginine-rich splicing factor SR45a-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 237.3 bits (604), Expect = 8.2e-59
Identity = 152/164 (92.68%), Postives = 153/164 (93.29%), Query Frame = 0 

Query: 1   MSYSRRSRYSRXXXXXXXXXXXXXXXXXXXXXXXXDVENPGNNLYVTGLSPRITRRELEK 60
           MSYSRRSRYSRXXXXXXXXXXXXXXXXXXXXXXXXDVENPGNNLYVTGLS RITRRELEK
Sbjct: 1   MSYSRRSRYSRXXXXXXXXXXXXXXXXXXXXXXXXDVENPGNNLYVTGLSHRITRRELEK 60

Query: 61  HFSAEGTVLDVHLVADPLTRESRGFGFITMSSIDEAENCIKYLNRSVLEGRIITVEKARR 120
           HFSAEGTVLDVHLV DP TRESRGFGFITMSS DEAE CIKYLNRSVLEGR+ITVEKARR
Sbjct: 61  HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRLITVEKARR 120

Query: 121 RRGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPYRRSFSRS 165
           RRGRTPTPGRY GLRTV VRRR RSYSSRRSPSYSPY RS S S
Sbjct: 121 RRGRTPTPGRYFGLRTVCVRRRLRSYSSRRSPSYSPYSRSLSCS 164

[Close]
BLAST of Cla97C03G051790 vs. NCBI nr
Match: XP_022948990.1 (serine/arginine-rich splicing factor SR45a-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 237.3 bits (604), Expect = 8.2e-59
Identity = 152/164 (92.68%), Postives = 153/164 (93.29%), Query Frame = 0 

Query: 1   MSYSRRSRYSRXXXXXXXXXXXXXXXXXXXXXXXXDVENPGNNLYVTGLSPRITRRELEK 60
           MSYSRRSRYSRXXXXXXXXXXXXXXXXXXXXXXXXDVENPGNNLYVTGLS RITRRELEK
Sbjct: 1   MSYSRRSRYSRXXXXXXXXXXXXXXXXXXXXXXXXDVENPGNNLYVTGLSHRITRRELEK 60

Query: 61  HFSAEGTVLDVHLVADPLTRESRGFGFITMSSIDEAENCIKYLNRSVLEGRIITVEKARR 120
           HFSAEGTVLDVHLV DP TRESRGFGFITMSS DEAE CIKYLNRSVLEGR+ITVEKARR
Sbjct: 61  HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRLITVEKARR 120

Query: 121 RRGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPYRRSFSRS 165
           RRGRTPTPGRY GLRTV VRRR RSYSSRRSPSYSPY RS S S
Sbjct: 121 RRGRTPTPGRYFGLRTVCVRRRLRSYSSRRSPSYSPYSRSLSCS 164

[Close]
BLAST of Cla97C03G051790 vs. TrEMBL
Match: tr|A0A1S3C508|A0A1S3C508_CUCME (serine/arginine-rich splicing factor SR45a-like OS=Cucumis melo OX=3656 GN=LOC103497100 PE=4 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 3.9e-57
Identity = 141/148 (95.27%), Postives = 142/148 (95.95%), Query Frame = 0 

Query: 1   MSYSRRSRYSRXXXXXXXXXXXXXXXXXXXXXXXXDVENPGNNLYVTGLSPRITRRELEK 60
           MSYSRRSRYSR    XXXXXXXXXXXXXXXXXXXX VENPGNNLYVTGLSPRITRRELEK
Sbjct: 1   MSYSRRSRYSRSPSFXXXXXXXXXXXXXXXXXXXXXVENPGNNLYVTGLSPRITRRELEK 60

Query: 61  HFSAEGTVLDVHLVADPLTRESRGFGFITMSSIDEAENCIKYLNRSVLEGRIITVEKARR 120
           HFSAEGTVLDVHL+ADPLTRESRGFGFITMSS DEAENCIKYLNRSVLEGRIITVEKARR
Sbjct: 61  HFSAEGTVLDVHLLADPLTRESRGFGFITMSSNDEAENCIKYLNRSVLEGRIITVEKARR 120

Query: 121 RRGRTPTPGRYLGLRTVHVRRRSRSYSS 149
           RRGRTPTPGRYLGLRTVHVRRRSRSYSS
Sbjct: 121 RRGRTPTPGRYLGLRTVHVRRRSRSYSS 148

[Close]
BLAST of Cla97C03G051790 vs. TrEMBL
Match: tr|A0A0A0LXJ6|A0A0A0LXJ6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G528490 PE=4 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 9.6e-56
Identity = 139/146 (95.21%), Postives = 139/146 (95.21%), Query Frame = 0 

Query: 1   MSYSRRSRYSRXXXXXXXXXXXXXXXXXXXXXXXXDVENPGNNLYVTGLSPRITRRELEK 60
           MSYSRRSRYSR    XXXXXXXXXXXXXXXXXXXX VENPGNNLYVTGLSPRITRRELEK
Sbjct: 1   MSYSRRSRYSRSPSFXXXXXXXXXXXXXXXXXXXXXVENPGNNLYVTGLSPRITRRELEK 60

Query: 61  HFSAEGTVLDVHLVADPLTRESRGFGFITMSSIDEAENCIKYLNRSVLEGRIITVEKARR 120
           HFSAEGTVLDVHLVADPLTRESRGFGFITMSS DEAENCIKYLNRSVLEGRIITVEKARR
Sbjct: 61  HFSAEGTVLDVHLVADPLTRESRGFGFITMSSNDEAENCIKYLNRSVLEGRIITVEKARR 120

Query: 121 RRGRTPTPGRYLGLRTVHVRRRSRSY 147
           RRGRTPTPGRYLGLRTVH RRRSRSY
Sbjct: 121 RRGRTPTPGRYLGLRTVHGRRRSRSY 146

[Close]
BLAST of Cla97C03G051790 vs. TrEMBL
Match: tr|A0A2P2KN59|A0A2P2KN59_RHIMU (FUS-interacting serine-arginine-rich protein 1 OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 4.0e-54
Identity = 124/164 (75.61%), Postives = 137/164 (83.54%), Query Frame = 0 

Query: 1   MSYSRRSRYSRXXXXXXXXXXXXXXXXXXXXXXXXDVENPGNNLYVTGLSPRITRRELEK 60
           MSYS+RSRYS             XXXXXXXXXX  DVENPGNNLYVTGLSPRIT+RELEK
Sbjct: 1   MSYSKRSRYSLSPSPYKRCSRSVXXXXXXXXXXSSDVENPGNNLYVTGLSPRITKRELEK 60

Query: 61  HFSAEGTVLDVHLVADPLTRESRGFGFITMSSIDEAENCIKYLNRSVLEGRIITVEKARR 120
           HF++EG V DVHLV DP TRESRGFGF+TMS+  EAE CIKYLNRSVLEGR+ITVEKA+R
Sbjct: 61  HFASEGKVSDVHLVVDPWTRESRGFGFVTMSTNQEAERCIKYLNRSVLEGRVITVEKAKR 120

Query: 121 RRGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPYRRSFSRS 165
           RRGRTPTPGRYLGLRT+ VR R+ SYS R+ PS+SPYRRS+SRS
Sbjct: 121 RRGRTPTPGRYLGLRTMRVRHRTPSYSPRQVPSHSPYRRSYSRS 164

[Close]
BLAST of Cla97C03G051790 vs. TrEMBL
Match: tr|A0A067LPT6|A0A067LPT6_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_08531 PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 2.6e-53
Identity = 140/174 (80.46%), Postives = 153/174 (87.93%), Query Frame = 0 

Query: 1   MSYSRRSRYSR----------XXXXXXXXXXXXXXXXXXXXXXXXDVENPGNNLYVTGLS 60
           MSYSRRSRYSR          XXXXXXXXXXXXXXXXXXXXXXXX V+NPGNNLYVTGLS
Sbjct: 1   MSYSRRSRYSRSPSPYKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDNPGNNLYVTGLS 60

Query: 61  PRITRRELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSIDEAENCIKYLNRSVLEG 120
           PRIT+R+LEKHF++EGTV+DVHLV DP TRESRGFGF+TMSS+ EA+ CIKYLNRSVLEG
Sbjct: 61  PRITKRDLEKHFASEGTVVDVHLVVDPWTRESRGFGFVTMSSVGEADRCIKYLNRSVLEG 120

Query: 121 RIITVEKARRRRGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPYRRSFSRS 165
           R+ITVEKA+RRRGRTPTPGRYLGLRT+ VRR + SYS RRSPSYSPY RS SRS
Sbjct: 121 RVITVEKAKRRRGRTPTPGRYLGLRTIRVRRWTPSYSPRRSPSYSPYERSRSRS 174

[Close]
BLAST of Cla97C03G051790 vs. TrEMBL
Match: tr|A0A2K2C366|A0A2K2C366_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G248100v3 PE=4 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 2.9e-52
Identity = 130/173 (75.14%), Postives = 145/173 (83.82%), Query Frame = 0 

Query: 1   MSYSRRSRY--SRXXXXXXXXXXXXXXXXXXXXXXXXDVENPGNNLYVTGLSPRITRREL 60
           MSYSRRSRY  S           XXXXXXXXXXXXXX VENPGNNLYVTGLSPRIT++EL
Sbjct: 1   MSYSRRSRYSLSPSPYRRDSRSIXXXXXXXXXXXXXXXVENPGNNLYVTGLSPRITKKEL 60

Query: 61  EKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSIDEAENCIKYLNRSVLEGRIITVEKA 120
           EKHF+AEGTV+DVHLV DPLTRESRGFGF+TMS+++EA+ CIKYL+RSVL GR+ITVEKA
Sbjct: 61  EKHFAAEGTVIDVHLVVDPLTRESRGFGFVTMSAVEEADRCIKYLDRSVLGGRVITVEKA 120

Query: 121 RRRRGRTPTPGRYLGLRTVH---VRRRSRSYSSRRSPSYSPYRRSFSRSTHYS 169
           +RRRGRTPTPGRYLGLRT+    V R + S S RRSPSYSPYRRS+SRS  YS
Sbjct: 121 KRRRGRTPTPGRYLGLRTIRGGGVHRWTPSPSPRRSPSYSPYRRSWSRSPRYS 173

[Close]
BLAST of Cla97C03G051790 vs. Swiss-Prot
Match: sp|Q84TH4|SR45A_ARATH (Serine/arginine-rich splicing factor SR45a OS=Arabidopsis thaliana OX=3702 GN=SR45A PE=1 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 1.5e-40
Identity = 99/150 (66.00%), Postives = 112/150 (74.67%), Query Frame = 0 

Query: 1   MSYSRRSRYS---RXXXXXXXXXXXXXXXXXXXXXXXXDVENPGNNLYVTGLSPRITRRE 60
           MSYSRRSRYS               XXXXXXXXXX   D ENPGN+LYVTGLS R+T R+
Sbjct: 31  MSYSRRSRYSPSLSPYDKRRGRSVSXXXXXXXXXXVSSDAENPGNSLYVTGLSHRVTERD 90

Query: 61  LEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSIDEAENCIKYLNRSVLEGRIITVEK 120
           LE HF+ EG V DVHLV DP TRESRGFGFI+M S+ +A  CI+ L+ SVL+GR+ITVEK
Sbjct: 91  LEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSVLQGRVITVEK 150

Query: 121 ARRRRGRTPTPGRYLGLRTVHVRRRSRSYS 148
           ARRRRGRTPTPG+YLGLRT   R +S SYS
Sbjct: 151 ARRRRGRTPTPGKYLGLRTARGRHKSPSYS 180

[Close]
BLAST of Cla97C03G051790 vs. Swiss-Prot
Match: sp|Q10422|YDC1_SCHPO (Uncharacterized RNA-binding protein C25G10.01 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC25G10.01 PE=1 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 4.3e-19
Identity = 48/111 (43.24%), Postives = 75/111 (67.57%), Query Frame = 0 

Query: 38  ENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSIDEAE 97
           EN GN+L+V+G++ R+   EL++ FS  GTV  V ++ +P+T+ SRGFGF++ S+++EA 
Sbjct: 97  ENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEAT 156

Query: 98  NCIKYLNRSVLEGRIITVEKARRRRGRTPTPGRYLGLRTVHVRRRSRSYSS 149
           + I  LN     GR++ V+KA+R R  +PTPG+Y+G      RR SR + S
Sbjct: 157 SAIDNLNSQEFYGRVLNVQKAKRSRPHSPTPGKYMGYDR---RRNSRDFPS 204

[Close]
BLAST of Cla97C03G051790 vs. Swiss-Prot
Match: sp|Q80YR5|SAFB2_MOUSE (Scaffold attachment factor B2 OS=Mus musculus OX=10090 GN=Safb2 PE=1 SV=2)

HSP 1 Score: 71.2 bits (173), Expect = 2.6e-11
Identity = 34/79 (43.04%), Postives = 52/79 (65.82%), Query Frame = 0 

Query: 41  GNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSIDEAENCI 100
           G NL+V+GLS      +L+  FS  G V+   +V +  +  +R +GF+TMS+ DEA  CI
Sbjct: 450 GRNLWVSGLSSSTRAADLKSLFSKHGKVIGAKVVTNARSPGARCYGFVTMSTSDEATKCI 509

Query: 101 KYLNRSVLEGRIITVEKAR 120
            +L+R+ L GR+I+VEKA+
Sbjct: 510 SHLHRTELHGRMISVEKAK 528

[Close]
BLAST of Cla97C03G051790 vs. Swiss-Prot
Match: sp|Q3ZBT6|TRA2B_BOVIN (Transformer-2 protein homolog beta OS=Bos taurus OX=9913 GN=TRA2B PE=2 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 4.3e-11
Identity = 49/128 (38.28%), Postives = 67/128 (52.34%), Query Frame = 0 

Query: 39  NPGNN--LYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSIDEA 98
           NP  N  L V GLS   T R+L + FS  G + DV +V D  +R SRGF F+   ++D+A
Sbjct: 113 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDA 172

Query: 99  ENCIKYLNRSVLEGRIITVEKARRRRGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSP 158
           +   +  N   L+GR I V+ +  +R  TPTPG Y+G R  +   R R Y  R       
Sbjct: 173 KEAKERANGMELDGRRIRVDFSITKRPHTPTPGIYMG-RPTYGSSRRRDYYDRGXXXXXX 232

Query: 159 YRRSFSRS 165
            R  +SRS
Sbjct: 233 DRDYYSRS 239

[Close]
BLAST of Cla97C03G051790 vs. Swiss-Prot
Match: sp|P62995|TRA2B_HUMAN (Transformer-2 protein homolog beta OS=Homo sapiens OX=9606 GN=TRA2B PE=1 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 4.3e-11
Identity = 49/128 (38.28%), Postives = 67/128 (52.34%), Query Frame = 0 

Query: 39  NPGNN--LYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSIDEA 98
           NP  N  L V GLS   T R+L + FS  G + DV +V D  +R SRGF F+   ++D+A
Sbjct: 113 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDA 172

Query: 99  ENCIKYLNRSVLEGRIITVEKARRRRGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSP 158
           +   +  N   L+GR I V+ +  +R  TPTPG Y+G R  +   R R Y  R       
Sbjct: 173 KEAKERANGMELDGRRIRVDFSITKRPHTPTPGIYMG-RPTYGSSRRRDYYDRGXXXXXX 232

Query: 159 YRRSFSRS 165
            R  +SRS
Sbjct: 233 DRDYYSRS 239

[Close]
BLAST of Cla97C03G051790 vs. TAIR10
Match: AT1G07350.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 168.3 bits (425), Expect = 8.5e-42
Identity = 99/150 (66.00%), Postives = 112/150 (74.67%), Query Frame = 0 

Query: 1   MSYSRRSRYS---RXXXXXXXXXXXXXXXXXXXXXXXXDVENPGNNLYVTGLSPRITRRE 60
           MSYSRRSRYS               XXXXXXXXXX   D ENPGN+LYVTGLS R+T R+
Sbjct: 31  MSYSRRSRYSPSLSPYDKRRGRSVSXXXXXXXXXXVSSDAENPGNSLYVTGLSHRVTERD 90

Query: 61  LEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSIDEAENCIKYLNRSVLEGRIITVEK 120
           LE HF+ EG V DVHLV DP TRESRGFGFI+M S+ +A  CI+ L+ SVL+GR+ITVEK
Sbjct: 91  LEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSVLQGRVITVEK 150

Query: 121 ARRRRGRTPTPGRYLGLRTVHVRRRSRSYS 148
           ARRRRGRTPTPG+YLGLRT   R +S SYS
Sbjct: 151 ARRRRGRTPTPGKYLGLRTARGRHKSPSYS 180

[Close]
BLAST of Cla97C03G051790 vs. TAIR10
Match: AT4G35785.5 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 114.0 bits (284), Expect = 1.9e-25
Identity = 53/82 (64.63%), Postives = 64/82 (78.05%), Query Frame = 0 

Query: 36  DVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSIDE 95
           +VENPG  LYVTGLS R+T ++LE HF+ EG V    LV +P TR SRGF F+TMSS+ +
Sbjct: 80  EVENPGTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKD 139

Query: 96  AENCIKYLNRSVLEGRIITVEK 118
           AE CIKYLN+SVLEGR ITVE+
Sbjct: 140 AERCIKYLNQSVLEGRYITVER 161

[Close]
BLAST of Cla97C03G051790 vs. TAIR10
Match: AT3G52380.1 (chloroplast RNA-binding protein 33)

HSP 1 Score: 67.4 bits (163), Expect = 2.0e-11
Identity = 43/103 (41.75%), Postives = 57/103 (55.34%), Query Frame = 0 

Query: 44  LYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSIDEAENCIKYL 103
           LYV  L   IT  EL + F   GTV+DV +V D +T  SRGFGF+TM SI+EA+  ++  
Sbjct: 118 LYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMF 177

Query: 104 NRSVLEGRIITVEKARRRRGRTPTPGRYLGLRTVHVRRRSRSY 147
           N S + GR + V      RG     G    +RT  +R  +RSY
Sbjct: 178 NSSQIGGRTVKVNFPEVPRG-----GENEVMRT-KIRDNNRSY 214

[Close]
BLAST of Cla97C03G051790 vs. TAIR10
Match: AT4G24770.1 (31-kDa RNA binding protein)

HSP 1 Score: 64.7 bits (156), Expect = 1.3e-10
Identity = 34/81 (41.98%), Postives = 48/81 (59.26%), Query Frame = 0 

Query: 44  LYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSIDEAENCIKYL 103
           L+V  L+  +  + L   F   GTV    ++ +  T +SRGFGF+TMSS+DEAE  ++  
Sbjct: 152 LFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKF 211

Query: 104 NRSVLEGRIITVEKARRRRGR 125
           NR  L GR++TV KA  R  R
Sbjct: 212 NRYDLNGRLLTVNKAAPRGSR 232

[Close]
BLAST of Cla97C03G051790 vs. TAIR10
Match: AT2G37510.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 62.4 bits (150), Expect = 6.6e-10
Identity = 30/83 (36.14%), Postives = 51/83 (61.45%), Query Frame = 0 

Query: 44  LYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSIDEAENCIKYL 103
           L+V+GLS   T  +L+  F++ G ++D  ++ D  +  S+GFGF+T ++I++AE     +
Sbjct: 36  LFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAEM 95

Query: 104 NRSVLEGRIITVEKARRRRGRTP 127
           N   L+G +I V+ AR R  R P
Sbjct: 96  NAKFLDGWVIFVDPARPREPRRP 118

The following BLAST results are available for this feature:
BLAST of Cla97C03G051790 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022948992.14.8e-5991.57serine/arginine-rich splicing factor SR45a-like isoform X4 [Cucurbita moschata][more]
XP_022948994.16.3e-5992.12serine/arginine-rich splicing factor SR45a-like isoform X5 [Cucurbita moschata][more]
XP_022948991.18.2e-5992.68serine/arginine-rich splicing factor SR45a-like isoform X3 [Cucurbita moschata][more]
XP_022948988.18.2e-5992.68serine/arginine-rich splicing factor SR45a-like isoform X1 [Cucurbita moschata] ... [more]
XP_022948990.18.2e-5992.68serine/arginine-rich splicing factor SR45a-like isoform X2 [Cucurbita moschata][more]
BLAST of Cla97C03G051790 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3C508|A0A1S3C508_CUCME3.9e-5795.27serine/arginine-rich splicing factor SR45a-like OS=Cucumis melo OX=3656 GN=LOC10... [more]
tr|A0A0A0LXJ6|A0A0A0LXJ6_CUCSA9.6e-5695.21Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G528490 PE=4 SV=1[more]
tr|A0A2P2KN59|A0A2P2KN59_RHIMU4.0e-5475.61FUS-interacting serine-arginine-rich protein 1 OS=Rhizophora mucronata OX=61149 ... [more]
tr|A0A067LPT6|A0A067LPT6_JATCU2.6e-5380.46Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_08531 PE=4 SV=1[more]
tr|A0A2K2C366|A0A2K2C366_POPTR2.9e-5275.14Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G248100v3 PE=... [more]
BLAST of Cla97C03G051790 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q84TH4|SR45A_ARATH1.5e-4066.00Serine/arginine-rich splicing factor SR45a OS=Arabidopsis thaliana OX=3702 GN=SR... [more]
sp|Q10422|YDC1_SCHPO4.3e-1943.24Uncharacterized RNA-binding protein C25G10.01 OS=Schizosaccharomyces pombe (stra... [more]
sp|Q80YR5|SAFB2_MOUSE2.6e-1143.04Scaffold attachment factor B2 OS=Mus musculus OX=10090 GN=Safb2 PE=1 SV=2[more]
sp|Q3ZBT6|TRA2B_BOVIN4.3e-1138.28Transformer-2 protein homolog beta OS=Bos taurus OX=9913 GN=TRA2B PE=2 SV=1[more]
sp|P62995|TRA2B_HUMAN4.3e-1138.28Transformer-2 protein homolog beta OS=Homo sapiens OX=9606 GN=TRA2B PE=1 SV=1[more]
BLAST of Cla97C03G051790 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G07350.18.5e-4266.00RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT4G35785.51.9e-2564.63RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT3G52380.12.0e-1141.75chloroplast RNA-binding protein 33[more]
AT4G24770.11.3e-1041.9831-kDa RNA binding protein[more]
AT2G37510.16.6e-1036.14RNA-binding (RRM/RBD/RNP motifs) family protein[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR012677Nucleotide-bd_a/b_plait_sf
IPR000504RRM_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0043484 regulation of RNA splicing
biological_process GO:0008150 biological_process
biological_process GO:0009644 response to high light intensity
biological_process GO:0048026 positive regulation of mRNA splicing, via spliceosome
cellular_component GO:0030529 intracellular ribonucleoprotein complex
cellular_component GO:0019013 viral nucleocapsid
cellular_component GO:0005575 cellular_component
cellular_component GO:0005681 spliceosomal complex
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003723 RNA binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0046872 metal ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C03G051790.1Cla97C03G051790.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 43..116
e-value: 8.7E-23
score: 91.7
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 44..113
e-value: 2.3E-15
score: 56.0
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 42..120
score: 16.961
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3DG3DSA:3.30.70.330coord: 2..127
e-value: 1.9E-27
score: 98.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 251..357
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 272..357
NoneNo IPR availablePANTHERPTHR15241TRANSFORMER-2-RELATEDcoord: 1..245
NoneNo IPR availablePANTHERPTHR15241:SF4SERINE/ARGININE-RICH SPLICING FACTOR SR45Acoord: 1..245
IPR035979RNA-binding domain superfamilySUPERFAMILYSSF54928RNA-binding domain, RBDcoord: 30..147

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla97C03G051790Cla008188Watermelon (97103) v1wmwmbB124
Cla97C03G051790Csa1G528490Cucumber (Chinese Long) v2cuwmbB043
Cla97C03G051790MELO3C020575Melon (DHL92) v3.5.1mewmbB153
Cla97C03G051790ClCG03G000990Watermelon (Charleston Gray)wcgwmbB186
Cla97C03G051790CSPI01G23640Wild cucumber (PI 183967)cpiwmbB044
Cla97C03G051790Cucsa.146830Cucumber (Gy14) v1cgywmbB246
Cla97C03G051790CmaCh01G006460Cucurbita maxima (Rimu)cmawmbB467
Cla97C03G051790CmaCh13G000840Cucurbita maxima (Rimu)cmawmbB225
Cla97C03G051790CmoCh13G000800Cucurbita moschata (Rifu)cmowmbB209
Cla97C03G051790CmoCh01G006780Cucurbita moschata (Rifu)cmowmbB448
Cla97C03G051790Lsi02G013080Bottle gourd (USVL1VR-Ls)lsiwmbB177
Cla97C03G051790CsGy1G023110Cucumber (Gy14) v2cgybwmbB042
Cla97C03G051790MELO3C020575.2Melon (DHL92) v3.6.1medwmbB142
Cla97C03G051790Carg20619Silver-seed gourdcarwmbB0404
Cla97C03G051790Carg12412Silver-seed gourdcarwmbB0467
Cla97C03G051790CsaV3_1G035950Cucumber (Chinese Long) v3cucwmbB042
Cla97C03G051790Bhi08G000445Wax gourdwgowmbB470
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C03G051790Watermelon (97103) v2wmbwmbB051
Cla97C03G051790Silver-seed gourdcarwmbB1053
Cla97C03G051790Cucumber (Gy14) v2cgybwmbB191
Cla97C03G051790Cucumber (Gy14) v1cgywmbB320
Cla97C03G051790Cucurbita maxima (Rimu)cmawmbB257
Cla97C03G051790Cucurbita maxima (Rimu)cmawmbB854
Cla97C03G051790Cucurbita moschata (Rifu)cmowmbB237
Cla97C03G051790Cucurbita moschata (Rifu)cmowmbB830
Cla97C03G051790Wild cucumber (PI 183967)cpiwmbB204
Cla97C03G051790Cucumber (Chinese Long) v3cucwmbB202
Cla97C03G051790Cucumber (Chinese Long) v2cuwmbB199
Cla97C03G051790Melon (DHL92) v3.6.1medwmbB316
Cla97C03G051790Melon (DHL92) v3.5.1mewmbB328
Cla97C03G051790Watermelon (Charleston Gray)wcgwmbB046
Cla97C03G051790Watermelon (97103) v1wmwmbB065