Carg12412 (gene) Silver-seed gourd

Overview
NameCarg12412
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptionserine/arginine-rich splicing factor SR45a-like
LocationCucurbita_argyrosperma_scaffold_074 : 811557 .. 813899 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTATTGCATGCGCTTTCGTGCGAGATATTACTAACGTTGAATACTCGGTTGCATTTCCTTTCGATTTTGGTTTTGCTTCTGCAGTTTGGGCGGTAAATTCTTTCTCTATCTCTCATTTCATGAACTCTTGCATTTATTTTCGTTGATTGAGATGATACGTTTGATTCTTGATTTCGATGATGTTTATGGAGAGAATTAGGGTAGGGTTATTGCTAGATTGTTTTTCGTGTGATTAGCATATTCATTTTCGAGTATTTCTTTCTATTGGAAGTCATGGATATTGTATTTCTTCATTTTCTTGTTCTTCACGAGTGTTAAACTGACGTTCCGATTTACCAGCTGCTCTATTCGAGAAACAAAATCATTGTAATTCCGTTGTACTCTTCTTTAGTAAATGCTGATCGTGTTAGGCTTGTCTTGGCTGATCAGGTCGCAGATGTCGTACTCCAGAAGGTCTAGGTACTCCCGCTCTCCTTCATACAAACGATCGGTCTCAAGGTCCCTGTCAAGGTCAAGGAGCCGTTCAAGGTATTTCTTGCTCAGGAACCCTTTGCTTGGTCGGTTTTTCCCATATTCTCTAGATCATCTGTATGATACATTTACTTCTATTTTGTGGATTTTTCTTTTCAGGAGCCCTTCTAGTGACGTTGAAAATCCTGGTAACAATTTGTACGTCACTGGTTTGTCACATAGAATTACAAGGAGAGAACTCGAGAAGCATTTTTCTGCTGAAGGAACAGTATGTCGCAGATCTTATTTTCTTCAAAATTTTTCTTTGGCTTGTACTTTTGATGGTGGTGTATGTGTTTTGTTCTTTCTGTTGGTGATTGAATTTATGGACTATTTTCTCTTTTCGTGAATGAATTTTTCATTCTCCAGGTGCTAGATGTTCATCTCGTGACTGATCCATGGACTAGAGAATCCCGTGGTTTTGGATTCATTACCATGTCTAGTAATGATGAGGCTGAACGTTGCATCAAATATCTAAATCGATCTGTACTTGAAGGTCGATTAATCACCGTGGAGAAGGTAAAAAATTAAACCAAGTACAATTTCATAGTCTCGAGATGTTTCTCATCATTAATGTTGTCTAAATTGTTCAACTTCAAATATTTACGGGATCTCTGGATGGTTTGTTGCAAGAGATTTGAGATTTTTGCTTCTGTGCACTTGAAGTTTTTTTGGCAGCAGGTTAGCTGTGTGTAGCAGCTCTTCATCAAACTCAAACTACAACTAATCAAACAAAACAAACACATGAAGTCTCAGAACATTGGGGTTGTATGCCCTGCATTTCTCTCTTTTATCTGCTAATTGATTCCTGTAGCCCTACTTTCCTCTCTACTGTGGCATGTTCCCCTGCTCTGCTGTTTTTCTTCAATTGACAATTGAATTGTCTCATTTTACATCTCTTATTTTCTGATAGGCTCGAAGACGGAGAGGTAGAACTCCGACTCCAGGGAGATACTTTGGACTTAGAACAGTCCGTGGTGAGCTTTTAATCTAATGTTTGATTTATTTCTATGAAGTATTGCGCTATTTTTTTTTTCTTTTGTCTAATCCTATGTTTATAACAGTGAGACGTAGATCGCGCAGCTACTCTTCTCGGCGTTCTCCCAGCTACTCTCCTTATAGCAGGAGCTTGAGCTGTTTGTCTAATTATTCATCTGACCGTAGCAGGAGCAGATCCCATTCTCCCAATCGACGCCGAAGATCAAATGACTCGCCATACCACCGCTATAGATCATACTCCCCTTATAGCCGCCGAAGATATGATTCTCCATACTATAGGCGTCATAGGTCGTATTCTCGATCGCACTCTCCATGTAGTAGGTCGCCTACCAGGAGACGTGACAGGTCGTATTCTCGATCCCACTCTCCATGTAGTAGGTTGCCTACCAGGAGACACGACAGGTCGTACTCACCTTACGACTATTGCTCCCCTGATCCATACTACAGAAGGCACAGGGATCGGTCAGTTTCTAGGAGTGTCTCACCAAAGGCAAGGGTTTCTAGTAGACGTTATTCCCGCAGTTATTCTCCTAGGCACCGTAGAAGCGCCTCGAGGAGTTACTCCCGTAGCAGAAGTTATTCACGCAGTCTTTCCCCTGAACGAAGCAGGAGATTCAGGAGCCATTCACACAGTATCTCTCCTGAACGAAGGAGCTCGAGGAGTCGCTCTCGCAGCCATACTCCAAGGCACCATAAGAGAGGAGGATATTCTGGTGGGAGTGGAAGCGTGGCTTCAAGGTCTGTTAGTCCTGCTTGATTTACTGATCTACTTCCTTGCTACTACCTTGATGGTCATGAATGTTGGTATTTTTAATTCACTCACTATTTTCTAA

mRNA sequence

TTTATTGCATGCGCTTTCGTGCGAGATATTACTAACGTTGAATACTCGGTTGCATTTCCTTTCGATTTTGGTTTTGCTTCTGCAGTTTGGGCGGTCGCAGATGTCGTACTCCAGAAGGTCTAGGTACTCCCGCTCTCCTTCATACAAACGATCGGTCTCAAGGTCCCTGTCAAGGTCAAGGAGCCGTTCAAGGAGCCCTTCTAGTGACGTTGAAAATCCTGGTAACAATTTGTACGTCACTGGTTTGTCACATAGAATTACAAGGAGAGAACTCGAGAAGCATTTTTCTGCTGAAGGAACAGTGCTAGATGTTCATCTCGTGACTGATCCATGGACTAGAGAATCCCGTGGTTTTGGATTCATTACCATGTCTAGTAATGATGAGGCTGAACGTTGCATCAAATATCTAAATCGATCTGTACTTGAAGGTCGATTAATCACCGTGGAGAAGAGATTTGAGATTTTTGCTTCTGTGCACTTGAAGTTTTTTTGGCAGCAGGCTCGAAGACGGAGAGGTAGAACTCCGACTCCAGGGAGATACTTTGGACTTAGAACAGTCCGTGGAGCAGATCCCATTCTCCCAATCGACGCCGAAGATCAAATGACTCGCCATACCACCGCTATAGATCATACTCCCCTTATAGCCGCCGAAGATATGATTCTCCATACTATAGGCGTCATAGGTCGTATTCTCGATCGCACTCTCCATGTAGTAGGTCGCCTACCAGGAGACGTGACAGGTCGTATTCTCGATCCCACTCTCCATGTAGTAGGTTGCCTACCAGGAGACACGACAGGTCGTACTCACCTTACGACTATTGCTCCCCTGATCCATACTACAGAAGGCACAGGGATCGGTCAGTTTCTAGGAGTGTCTCACCAAAGGCAAGGGTTTCTAGTAGACGTTATTCCCGCAGTTATTCTCCTAGGCACCGTAGAAGCGCCTCGAGGAGTTACTCCCGTAGCAGAAGTTATTCACGCAGTCTTTCCCCTGAACGAAGCAGGAGATTCAGGAGCCATTCACACAGTATCTCTCCTGAACGAAGGAGCTCGAGGAGTCGCTCTCGCAGCCATACTCCAAGGCACCATAAGAGAGGAGGATATTCTGGTGGGAGTGGAAGCGTGGCTTCAAGGTCTGTTAGTCCTGCTTGATTTACTGATCTACTTCCTTGCTACTACCTTGATGGTCATGAATGTTGGTATTTTTAATTCACTCACTATTTTCTAA

Coding sequence (CDS)

ATGTCGTACTCCAGAAGGTCTAGGTACTCCCGCTCTCCTTCATACAAACGATCGGTCTCAAGGTCCCTGTCAAGGTCAAGGAGCCGTTCAAGGAGCCCTTCTAGTGACGTTGAAAATCCTGGTAACAATTTGTACGTCACTGGTTTGTCACATAGAATTACAAGGAGAGAACTCGAGAAGCATTTTTCTGCTGAAGGAACAGTGCTAGATGTTCATCTCGTGACTGATCCATGGACTAGAGAATCCCGTGGTTTTGGATTCATTACCATGTCTAGTAATGATGAGGCTGAACGTTGCATCAAATATCTAAATCGATCTGTACTTGAAGGTCGATTAATCACCGTGGAGAAGAGATTTGAGATTTTTGCTTCTGTGCACTTGAAGTTTTTTTGGCAGCAGGCTCGAAGACGGAGAGGTAGAACTCCGACTCCAGGGAGATACTTTGGACTTAGAACAGTCCGTGGAGCAGATCCCATTCTCCCAATCGACGCCGAAGATCAAATGACTCGCCATACCACCGCTATAGATCATACTCCCCTTATAGCCGCCGAAGATATGATTCTCCATACTATAGGCGTCATAGGTCGTATTCTCGATCGCACTCTCCATGTAGTAGGTCGCCTACCAGGAGACGTGACAGGTCGTATTCTCGATCCCACTCTCCATGTAGTAGGTTGCCTACCAGGAGACACGACAGGTCGTACTCACCTTACGACTATTGCTCCCCTGATCCATACTACAGAAGGCACAGGGATCGGTCAGTTTCTAGGAGTGTCTCACCAAAGGCAAGGGTTTCTAGTAGACGTTATTCCCGCAGTTATTCTCCTAGGCACCGTAGAAGCGCCTCGAGGAGTTACTCCCGTAGCAGAAGTTATTCACGCAGTCTTTCCCCTGAACGAAGCAGGAGATTCAGGAGCCATTCACACAGTATCTCTCCTGAACGAAGGAGCTCGAGGAGTCGCTCTCGCAGCCATACTCCAAGGCACCATAAGAGAGGAGGATATTCTGGTGGGAGTGGAAGCGTGGCTTCAAGGTCTGTTAGTCCTGCTTGATTTACTGATCTACTTCCTTGCTACTACCTTGATGGTCATGAATGTTGGTATTTTTAATTCACTCACTATTTTCTAA

Protein sequence

MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELEKHFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRLITVEKRFEIFASVHLKFFWQQARRRRGRTPTPGRYFGLRTVRGADPILPIDAEDQMTRHTTAIDHTPLIAAEDMILHTIGVIGRILDRTLHVVGRLPGDVTGRILDPTLHVVGCLPGDTTGRTHLTTIAPLIHTTEGTGIGQFLGVSHQRQGFLVDVIPAVILLGTVEAPRGVTPVAEVIHAVFPLNEAGDSGAIHTVSLLNEGARGVALAAILQGTIREEDILVGVEAWLQGLLVLLDLLIYFLATTLMVMNVGIFNSLTIF
Homology
[Close]
BLAST of Carg12412 vs. NCBI nr
Match: XP_022998029.1 (serine/arginine-rich splicing factor SR45a-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 214.5 bits (545), Expect = 6.0e-52
Identity = 137/154 (88.96%), Postives = 138/154 (89.61%), Query Frame = 0 

Query: 1   MSYSRRSRYSRXXXXXXXXXXXXXXXXXXXXXXXXDVENPGNNLYVTGLSHRITRRELEK 60
           MSYSRRSRYSRXXXXXXXXXXXXXXXXXXXXXXXXDVENPGNNLYVTGLSHRITRRELEK
Sbjct: 1   MSYSRRSRYSRXXXXXXXXXXXXXXXXXXXXXXXXDVENPGNNLYVTGLSHRITRRELEK 60

Query: 61  HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRLITVEKRFE 120
           HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGR+ITVEK   
Sbjct: 61  HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRIITVEK--- 120

Query: 121 IFASVHLKFFWQQARRRRGRTPTPGRYFGLRTVR 155
                        ARRRRGRTPTPGRYFGLRTVR
Sbjct: 121 -------------ARRRRGRTPTPGRYFGLRTVR 138

[Close]
BLAST of Carg12412 vs. NCBI nr
Match: XP_022998028.1 (serine/arginine-rich splicing factor SR45a-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 214.5 bits (545), Expect = 6.0e-52
Identity = 137/154 (88.96%), Postives = 138/154 (89.61%), Query Frame = 0 

Query: 1   MSYSRRSRYSRXXXXXXXXXXXXXXXXXXXXXXXXDVENPGNNLYVTGLSHRITRRELEK 60
           MSYSRRSRYSRXXXXXXXXXXXXXXXXXXXXXXXXDVENPGNNLYVTGLSHRITRRELEK
Sbjct: 1   MSYSRRSRYSRXXXXXXXXXXXXXXXXXXXXXXXXDVENPGNNLYVTGLSHRITRRELEK 60

Query: 61  HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRLITVEKRFE 120
           HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGR+ITVEK   
Sbjct: 61  HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRIITVEK--- 120

Query: 121 IFASVHLKFFWQQARRRRGRTPTPGRYFGLRTVR 155
                        ARRRRGRTPTPGRYFGLRTVR
Sbjct: 121 -------------ARRRRGRTPTPGRYFGLRTVR 138

[Close]
BLAST of Carg12412 vs. NCBI nr
Match: XP_022948991.1 (serine/arginine-rich splicing factor SR45a-like isoform X3 [Cucurbita moschata])

HSP 1 Score: 213.8 bits (543), Expect = 1.0e-51
Identity = 137/153 (89.54%), Postives = 137/153 (89.54%), Query Frame = 0 

Query: 1   MSYSRRSRYSRXXXXXXXXXXXXXXXXXXXXXXXXDVENPGNNLYVTGLSHRITRRELEK 60
           MSYSRRSRYSRXXXXXXXXXXXXXXXXXXXXXXXXDVENPGNNLYVTGLSHRITRRELEK
Sbjct: 1   MSYSRRSRYSRXXXXXXXXXXXXXXXXXXXXXXXXDVENPGNNLYVTGLSHRITRRELEK 60

Query: 61  HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRLITVEKRFE 120
           HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRLITVEK   
Sbjct: 61  HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRLITVEK--- 120

Query: 121 IFASVHLKFFWQQARRRRGRTPTPGRYFGLRTV 154
                        ARRRRGRTPTPGRYFGLRTV
Sbjct: 121 -------------ARRRRGRTPTPGRYFGLRTV 137

[Close]
BLAST of Carg12412 vs. NCBI nr
Match: XP_022948994.1 (serine/arginine-rich splicing factor SR45a-like isoform X5 [Cucurbita moschata])

HSP 1 Score: 213.8 bits (543), Expect = 1.0e-51
Identity = 137/153 (89.54%), Postives = 137/153 (89.54%), Query Frame = 0 

Query: 1   MSYSRRSRYSRXXXXXXXXXXXXXXXXXXXXXXXXDVENPGNNLYVTGLSHRITRRELEK 60
           MSYSRRSRYSRXXXXXXXXXXXXXXXXXXXXXXXXDVENPGNNLYVTGLSHRITRRELEK
Sbjct: 1   MSYSRRSRYSRXXXXXXXXXXXXXXXXXXXXXXXXDVENPGNNLYVTGLSHRITRRELEK 60

Query: 61  HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRLITVEKRFE 120
           HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRLITVEK   
Sbjct: 61  HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRLITVEK--- 120

Query: 121 IFASVHLKFFWQQARRRRGRTPTPGRYFGLRTV 154
                        ARRRRGRTPTPGRYFGLRTV
Sbjct: 121 -------------ARRRRGRTPTPGRYFGLRTV 137

[Close]
BLAST of Carg12412 vs. NCBI nr
Match: XP_022948992.1 (serine/arginine-rich splicing factor SR45a-like isoform X4 [Cucurbita moschata])

HSP 1 Score: 213.8 bits (543), Expect = 1.0e-51
Identity = 137/153 (89.54%), Postives = 137/153 (89.54%), Query Frame = 0 

Query: 1   MSYSRRSRYSRXXXXXXXXXXXXXXXXXXXXXXXXDVENPGNNLYVTGLSHRITRRELEK 60
           MSYSRRSRYSRXXXXXXXXXXXXXXXXXXXXXXXXDVENPGNNLYVTGLSHRITRRELEK
Sbjct: 1   MSYSRRSRYSRXXXXXXXXXXXXXXXXXXXXXXXXDVENPGNNLYVTGLSHRITRRELEK 60

Query: 61  HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRLITVEKRFE 120
           HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRLITVEK   
Sbjct: 61  HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRLITVEK--- 120

Query: 121 IFASVHLKFFWQQARRRRGRTPTPGRYFGLRTV 154
                        ARRRRGRTPTPGRYFGLRTV
Sbjct: 121 -------------ARRRRGRTPTPGRYFGLRTV 137

[Close]
BLAST of Carg12412 vs. TAIR10
Match: AT1G07350.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 162.9 bits (411), Expect = 3.8e-40
Identity = 98/158 (62.03%), Postives = 109/158 (68.99%), Query Frame = 0 

Query: 1   MSYSRRSRYS---RXXXXXXXXXXXXXXXXXXXXXXXXDVENPGNNLYVTGLSHRITRRE 60
           MSYSRRSRYS               XXXXXXXXXX   D ENPGN+LYVTGLSHR+T R+
Sbjct: 31  MSYSRRSRYSPSLSPYDKRRGRSVSXXXXXXXXXXVSSDAENPGNSLYVTGLSHRVTERD 90

Query: 61  LEKHFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRLITVEK 120
           LE HF+ EG V DVHLV DPWTRESRGFGFI+M S  +A RCI+ L+ SVL+GR+ITVEK
Sbjct: 91  LEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSVLQGRVITVEK 150

Query: 121 RFEIFASVHLKFFWQQARRRRGRTPTPGRYFGLRTVRG 156
                           ARRRRGRTPTPG+Y GLRT RG
Sbjct: 151 ----------------ARRRRGRTPTPGKYLGLRTARG 172

[Close]
BLAST of Carg12412 vs. TAIR10
Match: AT4G35785.5 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 113.6 bits (283), Expect = 2.6e-25
Identity = 54/83 (65.06%), Postives = 65/83 (78.31%), Query Frame = 0 

Query: 36  DVENPGNNLYVTGLSHRITRRELEKHFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDE 95
           +VENPG  LYVTGLS R+T ++LE HF+ EG V    LV +P TR SRGF F+TMSS  +
Sbjct: 80  EVENPGTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKD 139

Query: 96  AERCIKYLNRSVLEGRLITVEKR 119
           AERCIKYLN+SVLEGR ITVE++
Sbjct: 140 AERCIKYLNQSVLEGRYITVERK 162

[Close]
BLAST of Carg12412 vs. TAIR10
Match: AT3G52380.1 (chloroplast RNA-binding protein 33)

HSP 1 Score: 66.2 bits (160), Expect = 4.8e-11
Identity = 33/72 (45.83%), Postives = 44/72 (61.11%), Query Frame = 0 

Query: 44  LYVTGLSHRITRRELEKHFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYL 103
           LYV  L + IT  EL + F   GTV+DV +V D  T  SRGFGF+TM S +EA+  ++  
Sbjct: 118 LYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMF 177

Query: 104 NRSVLEGRLITV 116
           N S + GR + V
Sbjct: 178 NSSQIGGRTVKV 189

[Close]
BLAST of Carg12412 vs. TAIR10
Match: AT4G24770.1 (31-kDa RNA binding protein)

HSP 1 Score: 62.8 bits (151), Expect = 5.3e-10
Identity = 32/74 (43.24%), Postives = 45/74 (60.81%), Query Frame = 0 

Query: 44  LYVTGLSHRITRRELEKHFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYL 103
           L+V  L++ +  + L   F   GTV    ++ +  T +SRGFGF+TMSS DEAE  ++  
Sbjct: 152 LFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKF 211

Query: 104 NRSVLEGRLITVEK 118
           NR  L GRL+TV K
Sbjct: 212 NRYDLNGRLLTVNK 225

[Close]
BLAST of Carg12412 vs. TAIR10
Match: AT3G52150.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 62.4 bits (150), Expect = 6.9e-10
Identity = 31/74 (41.89%), Postives = 44/74 (59.46%), Query Frame = 0 

Query: 44  LYVTGLSHRITRRELEKHFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYL 103
           +YV  L+  +T+  LE  FS +G V+   +   P T +S GFGF+T SS ++ E  I  L
Sbjct: 179 VYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVAL 238

Query: 104 NRSVLEGRLITVEK 118
           N S+LEG+ I V K
Sbjct: 239 NNSLLEGQKIRVNK 252

[Close]
BLAST of Carg12412 vs. Swiss-Prot
Match: sp|Q84TH4|SR45A_ARATH (Serine/arginine-rich splicing factor SR45a OS=Arabidopsis thaliana OX=3702 GN=SR45A PE=1 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 6.8e-39
Identity = 98/158 (62.03%), Postives = 109/158 (68.99%), Query Frame = 0 

Query: 1   MSYSRRSRYS---RXXXXXXXXXXXXXXXXXXXXXXXXDVENPGNNLYVTGLSHRITRRE 60
           MSYSRRSRYS               XXXXXXXXXX   D ENPGN+LYVTGLSHR+T R+
Sbjct: 31  MSYSRRSRYSPSLSPYDKRRGRSVSXXXXXXXXXXVSSDAENPGNSLYVTGLSHRVTERD 90

Query: 61  LEKHFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRLITVEK 120
           LE HF+ EG V DVHLV DPWTRESRGFGFI+M S  +A RCI+ L+ SVL+GR+ITVEK
Sbjct: 91  LEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSVLQGRVITVEK 150

Query: 121 RFEIFASVHLKFFWQQARRRRGRTPTPGRYFGLRTVRG 156
                           ARRRRGRTPTPG+Y GLRT RG
Sbjct: 151 ----------------ARRRRGRTPTPGKYLGLRTARG 172

[Close]
BLAST of Carg12412 vs. Swiss-Prot
Match: sp|Q10422|YDC1_SCHPO (Uncharacterized RNA-binding protein C25G10.01 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC25G10.01 PE=1 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 2.0e-14
Identity = 43/112 (38.39%), Postives = 65/112 (58.04%), Query Frame = 0 

Query: 38  ENPGNNLYVTGLSHRITRRELEKHFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAE 97
           EN GN+L+V+G++ R+   EL++ FS  GTV  V ++ +P T+ SRGFGF++ S+ +EA 
Sbjct: 97  ENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEAT 156

Query: 98  RCIKYLNRSVLEGRLITVEKRFEIFASVHLKFFWQQARRRRGRTPTPGRYFG 150
             I  LN     GR++ V+K                A+R R  +PTPG+Y G
Sbjct: 157 SAIDNLNSQEFYGRVLNVQK----------------AKRSRPHSPTPGKYMG 192

[Close]
BLAST of Carg12412 vs. Swiss-Prot
Match: sp|Q80YR5|SAFB2_MOUSE (Scaffold attachment factor B2 OS=Mus musculus OX=10090 GN=Safb2 PE=1 SV=2)

HSP 1 Score: 72.8 bits (177), Expect = 9.2e-12
Identity = 34/77 (44.16%), Postives = 53/77 (68.83%), Query Frame = 0 

Query: 41  GNNLYVTGLSHRITRRELEKHFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCI 100
           G NL+V+GLS      +L+  FS  G V+   +VT+  +  +R +GF+TMS++DEA +CI
Sbjct: 450 GRNLWVSGLSSSTRAADLKSLFSKHGKVIGAKVVTNARSPGARCYGFVTMSTSDEATKCI 509

Query: 101 KYLNRSVLEGRLITVEK 118
            +L+R+ L GR+I+VEK
Sbjct: 510 SHLHRTELHGRMISVEK 526

[Close]
BLAST of Carg12412 vs. Swiss-Prot
Match: sp|Q14151|SAFB2_HUMAN (Scaffold attachment factor B2 OS=Homo sapiens OX=9606 GN=SAFB2 PE=1 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 2.1e-11
Identity = 34/77 (44.16%), Postives = 53/77 (68.83%), Query Frame = 0 

Query: 41  GNNLYVTGLSHRITRRELEKHFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCI 100
           G NL+V+GLS      +L+  FS  G V+   +VT+  +  +R +GF+TMS++DEA +CI
Sbjct: 406 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSDEATKCI 465

Query: 101 KYLNRSVLEGRLITVEK 118
            +L+R+ L GR+I+VEK
Sbjct: 466 SHLHRTELHGRMISVEK 482

[Close]
BLAST of Carg12412 vs. Swiss-Prot
Match: sp|Q39061|CP33_ARATH (RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP33 PE=2 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 8.6e-10
Identity = 33/72 (45.83%), Postives = 44/72 (61.11%), Query Frame = 0 

Query: 44  LYVTGLSHRITRRELEKHFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYL 103
           LYV  L + IT  EL + F   GTV+DV +V D  T  SRGFGF+TM S +EA+  ++  
Sbjct: 118 LYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMF 177

Query: 104 NRSVLEGRLITV 116
           N S + GR + V
Sbjct: 178 NSSQIGGRTVKV 189

[Close]
BLAST of Carg12412 vs. TrEMBL
Match: tr|A0A0A0LXJ6|A0A0A0LXJ6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G528490 PE=4 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 6.5e-47
Identity = 127/155 (81.94%), Postives = 128/155 (82.58%), Query Frame = 0 

Query: 1   MSYSRRSRYSRXXXXXXXXXXXXXXXXXXXXXXXXDVENPGNNLYVTGLSHRITRRELEK 60
           MSYSRRSRYSR    XXXXXXXXXXXXXXXXXXXX VENPGNNLYVTGLS RITRRELEK
Sbjct: 1   MSYSRRSRYSRSPSFXXXXXXXXXXXXXXXXXXXXXVENPGNNLYVTGLSPRITRRELEK 60

Query: 61  HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRLITVEKRFE 120
           HFSAEGTVLDVHLV DP TRESRGFGFITMSSNDEAE CIKYLNRSVLEGR+ITVEK   
Sbjct: 61  HFSAEGTVLDVHLVADPLTRESRGFGFITMSSNDEAENCIKYLNRSVLEGRIITVEK--- 120

Query: 121 IFASVHLKFFWQQARRRRGRTPTPGRYFGLRTVRG 156
                        ARRRRGRTPTPGRY GLRTV G
Sbjct: 121 -------------ARRRRGRTPTPGRYLGLRTVHG 139

[Close]
BLAST of Carg12412 vs. TrEMBL
Match: tr|A0A1S3C508|A0A1S3C508_CUCME (serine/arginine-rich splicing factor SR45a-like OS=Cucumis melo OX=3656 GN=LOC103497100 PE=4 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 5.5e-46
Identity = 125/153 (81.70%), Postives = 127/153 (83.01%), Query Frame = 0 

Query: 1   MSYSRRSRYSRXXXXXXXXXXXXXXXXXXXXXXXXDVENPGNNLYVTGLSHRITRRELEK 60
           MSYSRRSRYSR    XXXXXXXXXXXXXXXXXXXX VENPGNNLYVTGLS RITRRELEK
Sbjct: 1   MSYSRRSRYSRSPSFXXXXXXXXXXXXXXXXXXXXXVENPGNNLYVTGLSPRITRRELEK 60

Query: 61  HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRLITVEKRFE 120
           HFSAEGTVLDVHL+ DP TRESRGFGFITMSSNDEAE CIKYLNRSVLEGR+ITVEK   
Sbjct: 61  HFSAEGTVLDVHLLADPLTRESRGFGFITMSSNDEAENCIKYLNRSVLEGRIITVEK--- 120

Query: 121 IFASVHLKFFWQQARRRRGRTPTPGRYFGLRTV 154
                        ARRRRGRTPTPGRY GLRTV
Sbjct: 121 -------------ARRRRGRTPTPGRYLGLRTV 137

[Close]
BLAST of Carg12412 vs. TrEMBL
Match: tr|A0A061GWL8|A0A061GWL8_THECC (RNA-binding family protein isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_041684 PE=4 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 2.8e-45
Identity = 123/158 (77.85%), Postives = 134/158 (84.81%), Query Frame = 0 

Query: 1   MSYSRRSRYSR----XXXXXXXXXXXXXXXXXXXXXXXXDVENPGNNLYVTGLSHRITRR 60
           MSYSRRSRYS     XXXXXXXXXXXXXXXXXXXXXXXX   NPGNNLYVTGLS RIT+R
Sbjct: 1   MSYSRRSRYSHSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPGNNLYVTGLSPRITKR 60

Query: 61  ELEKHFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRLITVE 120
           ELEKHF++EG V+DVHLV DPWTRESRGFGF+TM++N+EAERCIKYLNRSVLEGR+ITVE
Sbjct: 61  ELEKHFASEGNVIDVHLVVDPWTRESRGFGFVTMATNEEAERCIKYLNRSVLEGRVITVE 120

Query: 121 KRFEIFASVHLKFFWQQARRRRGRTPTPGRYFGLRTVR 155
                      KF WQQA+RRRGRTPTPGRY GLRT+R
Sbjct: 121 -----------KFLWQQAKRRRGRTPTPGRYLGLRTIR 147

[Close]
BLAST of Carg12412 vs. TrEMBL
Match: tr|A0A2P2KN59|A0A2P2KN59_RHIMU (FUS-interacting serine-arginine-rich protein 1 OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 4.0e-44
Identity = 108/154 (70.13%), Postives = 117/154 (75.97%), Query Frame = 0 

Query: 1   MSYSRRSRYSRXXXXXXXXXXXXXXXXXXXXXXXXDVENPGNNLYVTGLSHRITRRELEK 60
           MSYS+RSRYS             XXXXXXXXXX  DVENPGNNLYVTGLS RIT+RELEK
Sbjct: 1   MSYSKRSRYSLSPSPYKRCSRSVXXXXXXXXXXSSDVENPGNNLYVTGLSPRITKRELEK 60

Query: 61  HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRLITVEKRFE 120
           HF++EG V DVHLV DPWTRESRGFGF+TMS+N EAERCIKYLNRSVLEGR+ITVEK   
Sbjct: 61  HFASEGKVSDVHLVVDPWTRESRGFGFVTMSTNQEAERCIKYLNRSVLEGRVITVEK--- 120

Query: 121 IFASVHLKFFWQQARRRRGRTPTPGRYFGLRTVR 155
                        A+RRRGRTPTPGRY GLRT+R
Sbjct: 121 -------------AKRRRGRTPTPGRYLGLRTMR 138

[Close]
BLAST of Carg12412 vs. TrEMBL
Match: tr|A0A0D2MQW7|A0A0D2MQW7_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_003G125000 PE=4 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 1.3e-42
Identity = 120/154 (77.92%), Postives = 128/154 (83.12%), Query Frame = 0 

Query: 1   MSYSRRSRYSRXXXXXXXXXXXXXXXXXXXXXXXXDVENPGNNLYVTGLSHRITRRELEK 60
           MSYSRRS Y  XXXXXXXXXXXXXXXXXXXXXXXX  ENPGNNLYVTGLSHRIT+RELEK
Sbjct: 1   MSYSRRSSYXXXXXXXXXXXXXXXXXXXXXXXXXXXXENPGNNLYVTGLSHRITKRELEK 60

Query: 61  HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRLITVEKRFE 120
           HFS+EG V+DVHLV DPWTRESRGFGF+TMS+ +EAERCIKYLNRSVLEGR+ITVEK   
Sbjct: 61  HFSSEGKVVDVHLVVDPWTRESRGFGFVTMSTIEEAERCIKYLNRSVLEGRVITVEK--- 120

Query: 121 IFASVHLKFFWQQARRRRGRTPTPGRYFGLRTVR 155
                        A+RRRGRTPTPGRY GLRT R
Sbjct: 121 -------------AKRRRGRTPTPGRYLGLRTSR 138

The following BLAST results are available for this feature:
BLAST of Carg12412 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022998029.16.0e-5288.96serine/arginine-rich splicing factor SR45a-like isoform X2 [Cucurbita maxima][more]
XP_022998028.16.0e-5288.96serine/arginine-rich splicing factor SR45a-like isoform X1 [Cucurbita maxima][more]
XP_022948991.11.0e-5189.54serine/arginine-rich splicing factor SR45a-like isoform X3 [Cucurbita moschata][more]
XP_022948994.11.0e-5189.54serine/arginine-rich splicing factor SR45a-like isoform X5 [Cucurbita moschata][more]
XP_022948992.11.0e-5189.54serine/arginine-rich splicing factor SR45a-like isoform X4 [Cucurbita moschata][more]
BLAST of Carg12412 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G07350.13.8e-4062.03RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT4G35785.52.6e-2565.06RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT3G52380.14.8e-1145.83chloroplast RNA-binding protein 33[more]
AT4G24770.15.3e-1043.2431-kDa RNA binding protein[more]
AT3G52150.16.9e-1041.89RNA-binding (RRM/RBD/RNP motifs) family protein[more]
BLAST of Carg12412 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q84TH4|SR45A_ARATH6.8e-3962.03Serine/arginine-rich splicing factor SR45a OS=Arabidopsis thaliana OX=3702 GN=SR... [more]
sp|Q10422|YDC1_SCHPO2.0e-1438.39Uncharacterized RNA-binding protein C25G10.01 OS=Schizosaccharomyces pombe (stra... [more]
sp|Q80YR5|SAFB2_MOUSE9.2e-1244.16Scaffold attachment factor B2 OS=Mus musculus OX=10090 GN=Safb2 PE=1 SV=2[more]
sp|Q14151|SAFB2_HUMAN2.1e-1144.16Scaffold attachment factor B2 OS=Homo sapiens OX=9606 GN=SAFB2 PE=1 SV=1[more]
sp|Q39061|CP33_ARATH8.6e-1045.83RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP33 ... [more]
BLAST of Carg12412 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LXJ6|A0A0A0LXJ6_CUCSA6.5e-4781.94Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G528490 PE=4 SV=1[more]
tr|A0A1S3C508|A0A1S3C508_CUCME5.5e-4681.70serine/arginine-rich splicing factor SR45a-like OS=Cucumis melo OX=3656 GN=LOC10... [more]
tr|A0A061GWL8|A0A061GWL8_THECC2.8e-4577.85RNA-binding family protein isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_041684 PE... [more]
tr|A0A2P2KN59|A0A2P2KN59_RHIMU4.0e-4470.13FUS-interacting serine-arginine-rich protein 1 OS=Rhizophora mucronata OX=61149 ... [more]
tr|A0A0D2MQW7|A0A0D2MQW7_GOSRA1.3e-4277.92Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_003G125000 PE=4 ... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR012677Nucleotide-bd_a/b_plait_sf
IPR000504RRM_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg12412-RACarg12412-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 43..116
e-value: 2.3E-20
score: 83.7
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 44..113
e-value: 3.0E-15
score: 55.7
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 42..120
score: 16.108
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3DG3DSA:3.30.70.330coord: 2..120
e-value: 7.7E-26
score: 92.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..43
NoneNo IPR availablePANTHERPTHR15241TRANSFORMER-2-RELATEDcoord: 1..156
NoneNo IPR availablePANTHERPTHR15241:SF4SERINE/ARGININE-RICH SPLICING FACTOR SR45Acoord: 1..156
IPR035979RNA-binding domain superfamilySUPERFAMILYSSF54928RNA-binding domain, RBDcoord: 30..120

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg12412Cla008188Watermelon (97103) v1carwmB0440
Carg12412Csa1G528490Cucumber (Chinese Long) v2carcuB0471
Carg12412MELO3C020575Melon (DHL92) v3.5.1carmeB0449
Carg12412ClCG03G000990Watermelon (Charleston Gray)carwcgB0436
Carg12412CSPI01G23640Wild cucumber (PI 183967)carcpiB0476
Carg12412Cucsa.146830Cucumber (Gy14) v1carcgyB0509
Carg12412CmaCh01G006460Cucurbita maxima (Rimu)carcmaB0613
Carg12412CmaCh13G000840Cucurbita maxima (Rimu)carcmaB0610
Carg12412CmoCh13G000800Cucurbita moschata (Rifu)carcmoB0594
Carg12412CmoCh01G006780Cucurbita moschata (Rifu)carcmoB0596
Carg12412Lsi02G013080Bottle gourd (USVL1VR-Ls)carlsiB403
Carg12412Cp4.1LG02g11480Cucurbita pepo (Zucchini)carcpeB0623
Carg12412CsGy1G023110Cucumber (Gy14) v2carcgybB0448
Carg12412MELO3C020575.2Melon (DHL92) v3.6.1carmedB0451
Carg12412CsaV3_1G035950Cucumber (Chinese Long) v3carcucB0472
Carg12412Cla97C03G051790Watermelon (97103) v2carwmbB0467
Carg12412Bhi08G000445Wax gourdcarwgoB0535
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg12412Carg20619Silver-seed gourdcarcarB408
The following block(s) are covering this gene:
GeneOrganismBlock
Carg12412Silver-seed gourdcarcarB192
Carg12412Silver-seed gourdcarcarB449
Carg12412Cucumber (Gy14) v2carcgybB0450
Carg12412Cucumber (Gy14) v1carcgyB0510
Carg12412Cucurbita maxima (Rimu)carcmaB0612
Carg12412Cucurbita moschata (Rifu)carcmoB0595
Carg12412Cucurbita pepo (Zucchini)carcpeB0619
Carg12412Cucurbita pepo (Zucchini)carcpeB0620
Carg12412Cucurbita pepo (Zucchini)carcpeB0621
Carg12412Wild cucumber (PI 183967)carcpiB0478
Carg12412Cucumber (Chinese Long) v2carcuB0473
Carg12412Cucumber (Chinese Long) v3carcucB0475
Carg12412Melon (DHL92) v3.5.1carmeB0450
Carg12412Melon (DHL92) v3.6.1carmedB0453
Carg12412Watermelon (Charleston Gray)carwcgB0431
Carg12412Watermelon (97103) v1carwmB0438
Carg12412Watermelon (97103) v2carwmbB0463